Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0002289

Physical Location & Seq

Genomic Coordinates Reverse (-)

17414898 .. 17418883

Gene Structure 3986 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G225300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1323 bp

ATGGCCGCCACCGCCACCACCTTCTCTAACCTCTCTCTCTCCCCCAAGCTCCCAACTTTTCTACTCCCCAACACGCCCTCAACAAAACCCAGGACCTTGAAGTTGAAGATCACCTTCTGTCTGTCCCTAAAGCAATCCAATGACCAAACTCTCACAACCCAAAACGCCGCCGTCGACAACCTCCGTGTGGTCTTCGGCGCAGGAGGCACCGGCGGCCACATATACCCTGCTGTTGCCATAGCCGATGAGCTCAAGAACACCAAACCCACCACCCAAATCCTCTTTTTAGGCTCACCCAATAGCATGGAAAGTACCGCAATACCCTCCGCCGGCTACGACTTCGACACCGTACCCACCACCAAATTACACCGCCCACTCCTCTCTCCTAAGAACATTTTCCTCCCGTATAATTTGATCAGGTCCATCATCCACAGTTACTCAAAATTGCGTGATTTTGAGCCCCATATCGTTTTTGGTACTGGTGGGTATGTATCCTTCGCTATAGGCTTGGCGGCCAAGCTGAAAGGCGCCAAGCTTGTAATCCAAGAACAGAACGCCGTTCCAGGGATAGCCAATTGGGTTCTCTCAATTTTAGCTGATGCTGTGTTTGTGGCTTTCGATTCCACCATTGATTGCTTCCCAAGAGGTAAGACCAAGTGCGTGGTTTGTGGCAATCCGGTGAGGTTGTCTTTGAAAAAGCAAGTGTCGAAGGCGGTGGCAAGGGGGCGTTTTTTTCCAAGCTCCTGTGAGATTGGGGAGTTGGAGAAGGCTAAGGTTCTTTTGGTTCTTGGAGGGTCTTTGGGTGCTAATGCTATTAACATTGCTGTGCTGAATTTATATTATCAGATGCTGTTGGAGAATGAGAACTTGTTTATTATATGGCAAACTGGGGTGGAGGCCCATAATGAGATGGAAAGTCTTGTTAAGAATCATCCACATTTGCTTTTGACACCGTTCATGCATTCGATGGATACGGCATATGCAGCTGCAGACCTTGTTGTATCTAGAGCTGGTGCAATGACTTGCTATGAGATTTTGGCAACTGGGAAGCCTTCCATTCTGATACCATCACCTAATGTTGCCGAAGGTCATCAATTCAAAAATGCTTCTTTAATGGCAGACTTAGCAGGTGCAAGCGTTATAACTGAAGATGAACTTGATTCAACAACCCTTGGAAGTGCAATTGAAGAGATTTTAGGGGATGAGAGTAAAATGGCAGAGTTGTCTGAAAGGGCTCTGAAAACTGCAAATTCCAGTGCCTCTGTAGAGATTGCACAACACATACTTTCTCTAGTCAACTTATCAACATCAAAGGAGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00550 ko01100 ko01502 ko04112 map00550 map01100 map01502 map04112

Pfam Domains

Protein Families

Glyco_tran_28_C Glyco_transf_28

Protein Analysis

441

Amino Acids

47.25

Weight (kDa)

7.14

Isoelectric Point (pI)

38.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002289)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73740
fragaria_vesca	FvH4_5g16720 FvH4_5g16720 FvH4_5g16720
malus_domestica	MD06G1220900.v1.1 MD14G1230300.v1.1
prunus_persica	Prupe.5G225300_v2.0.a1 Prupe.5G225300_v2.0.a1
pyrus_communis	pycom06g19680 pycom14g19160
rosa_chinensis	RchiOBHm_Chr2g0147091 RchiOBHm_Chr4g0425761 RchiOBHm_Chr5g0055191 RchiOBHm_Chr7g0179381
rosa_laevigata	RLG00000005361 RLG00000020332
rosa_multiflora	Rmu_co8392303.1_g000001 Rmu_sc0001986.1_g000009 Rmu_sc0005157.1_g000016 Rmu_sc0016328.1_g000001 Rmu_sc0021620.1_g000001
rosa_roxburghii	Rroxscaffold_180G00433370 Rroxscaffold_1G00009080 Rroxscaffold_2G00138060 Rroxscaffold_3G00274080 Rroxscaffold_4G00307130 Rroxscaffold_6G00394940 Rroxscaffold_6G00425500
rosa_rugosa	Rorug02G0167700 Rorug04G0276300 Rorug06G0423900
rosa_samantha	Rh4BG339500 Rh4CG354700 Rh4DG205700 Rh5CG449000 Rh6DG030500 Rh7AG023300 Rh7BG022900 Rh7CG024200 Rh7DG023700 Rh7DG284700
rosa_wichuraiana	Rw7G001880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1142
AarI	CACCTGC	1 cut(s)	1118
Acc36I	ACCTGC	1 cut(s)	1118
AccB1I	GGYRCC	2 cut(s)	206, 527
AccI	GTMKAC	1 cut(s)	174
AciI	CCGC	9 cut(s)	6, 12, 168, 213, 315, 327, 370, 512, 713
AcoI	YGGCCR	3 cut(s)	3, 214, 513
AcsI	RAATTY	2 cut(s)	832, 1249
AcuI	CTGAAG	1 cut(s)	1167
AcyI	GRCGYC	1 cut(s)	528
AfaI	GTAC	3 cut(s)	313, 351, 478
AfiI	CCNNNNNNNGG	3 cut(s)	187, 329, 564
AgsI	TTSAA	6 cut(s)	100, 106, 694, 1099, 1164, 1187
AjnI	CCWGG	2 cut(s)	89, 562
AluBI	AGCT	8 cut(s)	49, 250, 520, 535, 596, 741, 986, 1010
AluI	AGCT	8 cut(s)	49, 250, 520, 535, 596, 741, 986, 1010
Alw21I	GWGCWC	1 cut(s)	252
AlwNI	CAGNNNCTG	1 cut(s)	850
AoxI	GGCC	4 cut(s)	3, 214, 513, 897
ApeKI	GCWGC	2 cut(s)	983, 986
ApoI	RAATTY	2 cut(s)	832, 1249
Asp700I	GAANNNNTTC	1 cut(s)	395
AspLEI	GCGC	2 cut(s)	200, 530
AspS9I	GGNCC	3 cut(s)	93, 420, 898
AsuHPI	GGTGA	4 cut(s)	103, 285, 691, 1062
AvaII	GGWCC	2 cut(s)	93, 420
BanI	GGYRCC	2 cut(s)	206, 527
BanII	GRGCYC	3 cut(s)	252, 462, 1237
BarI	GAAGNNNNNNTAC	2 cut(s)	479, 511
BbsI	GAAGAC	1 cut(s)	184
Bbv12I	GWGCWC	1 cut(s)	252
BbvI	GCAGC	2 cut(s)	973, 995
BccI	CCATC	4 cut(s)	431, 904, 961, 1075
BceAI	ACGGC	3 cut(s)	155, 542, 990
BciT130I	CCWGG	2 cut(s)	91, 564
BciVI	GTATCC	2 cut(s)	502, 964
BclI	TGATCA	1 cut(s)	414
BfaI	CTAG	2 cut(s)	1005, 1292
BfmI	CTRYAG	3 cut(s)	501, 987, 1263
BfoI	RGCGCY	1 cut(s)	531
BfuAI	ACCTGC	1 cut(s)	1118
BfuI	GTATCC	2 cut(s)	502, 964
BisI	GCNGC	6 cut(s)	6, 168, 214, 513, 984, 987
BlsI	GCNGC	6 cut(s)	7, 169, 215, 514, 985, 988
Bme1390I	CCNGG	2 cut(s)	91, 564
Bme18I	GGWCC	2 cut(s)	93, 420
BmgT120I	GGNCC	3 cut(s)	93, 420, 898
BmiI	GGNNCC	2 cut(s)	208, 529
BmrFI	CCNGG	2 cut(s)	91, 564
BmrI	ACTGGG	2 cut(s)	897, 1053
BmsI	GCATC	2 cut(s)	589, 837
BmuI	ACTGGG	2 cut(s)	897, 1053
BpiI	GAAGAC	1 cut(s)	184
Bpu10I	CCTNAGC	1 cut(s)	771
BpuEI	CTTGAG	1 cut(s)	236
BsaHI	GRCGYC	1 cut(s)	528
BsaJI	CCNNGG	3 cut(s)	89, 563, 1171
BsaWI	WCCGGW	1 cut(s)	676
Bsc4I	CCNNNNNNNGG	3 cut(s)	187, 329, 564
Bse118I	RCCGGY	2 cut(s)	209, 329
Bse1I	ACTGG	4 cut(s)	484, 892, 1048, 1254
Bse3DI	GCAATG	2 cut(s)	819, 1023
BseBI	CCWGG	2 cut(s)	91, 564
BseDI	CCNNGG	3 cut(s)	89, 563, 1171
BseGI	GGATG	3 cut(s)	426, 931, 1207
BseLI	CCNNNNNNNGG	3 cut(s)	187, 329, 564
BseMI	GCAATG	2 cut(s)	819, 1023
BseNI	ACTGG	4 cut(s)	484, 892, 1048, 1254
BseRI	GAGGAG	1 cut(s)	368
BseXI	GCAGC	2 cut(s)	973, 995
BshFI	GGCC	4 cut(s)	5, 216, 515, 899
BshNI	GGYRCC	2 cut(s)	206, 527
BsiHKAI	GWGCWC	1 cut(s)	252
BsiSI	CCGG	3 cut(s)	210, 330, 677
BslFI	GGGAC	1 cut(s)	109
BslI	CCNNNNNNNGG	3 cut(s)	187, 329, 564
BsmFI	GGGAC	1 cut(s)	109
BsmI	GAATGC	1 cut(s)	961
BsnI	GGCC	4 cut(s)	5, 216, 515, 899
Bsp1286I	GDGCHC	3 cut(s)	252, 462, 1237
Bsp143I	GATC	2 cut(s)	108, 414
BspACI	CCGC	9 cut(s)	6, 12, 168, 213, 315, 327, 370, 512, 713
BspANI	GGCC	4 cut(s)	5, 216, 515, 899
BspLI	GGNNCC	2 cut(s)	208, 529
BspMAI	CTGCAG	1 cut(s)	991
BspMI	ACCTGC	1 cut(s)	1118
BspT107I	GGYRCC	2 cut(s)	206, 527
BsrDI	GCAATG	2 cut(s)	819, 1023
BsrFI	RCCGGY	2 cut(s)	209, 329
BsrI	ACTGG	4 cut(s)	484, 892, 1048, 1254
BssAI	RCCGGY	2 cut(s)	209, 329
BssECI	CCNNGG	3 cut(s)	89, 563, 1171
BssMI	GATC	2 cut(s)	108, 414
BssNI	GRCGYC	1 cut(s)	528
BssT1I	CCWWGG	1 cut(s)	1171
Bst2UI	CCWGG	2 cut(s)	91, 564
Bst4CI	ACNGT	3 cut(s)	349, 434, 954
Bst6I	CTCTTC	1 cut(s)	1182
BstACI	GRCGYC	1 cut(s)	528
BstC8I	GCNNGC	2 cut(s)	331, 1135
BstDEI	CTNAG	3 cut(s)	387, 771, 1123
BstF5I	GGATG	3 cut(s)	426, 931, 1207
BstH2I	RGCGCY	1 cut(s)	531
BstHHI	GCGC	2 cut(s)	200, 530
BstKTI	GATC	2 cut(s)	111, 417
BstMBI	GATC	2 cut(s)	108, 414
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 204, 213, 983, 1124
BstNI	CCWGG	2 cut(s)	91, 564
BstSCI	CCNGG	2 cut(s)	89, 562
BstSFI	CTRYAG	3 cut(s)	501, 987, 1263
BstV1I	GCAGC	2 cut(s)	973, 995
BstV2I	GAAGAC	1 cut(s)	184
BstXI	CCANNNNNNTGG	2 cut(s)	304, 661
BsuI	GTATCC	2 cut(s)	502, 964
BsuRI	GGCC	4 cut(s)	5, 216, 515, 899
BtsCI	GGATG	3 cut(s)	426, 931, 1207
BtsIMutI	CAGTG	1 cut(s)	1261
BveI	ACCTGC	1 cut(s)	1118
Cac8I	GCNNGC	2 cut(s)	331, 1135
CaiI	CAGNNNCTG	1 cut(s)	850
CfoI	GCGC	2 cut(s)	200, 530
Cfr10I	RCCGGY	2 cut(s)	209, 329
Cfr13I	GGNCC	3 cut(s)	93, 420, 898
Csp6I	GTAC	3 cut(s)	312, 350, 477
CviAII	CATG	2 cut(s)	304, 958
CviQI	GTAC	3 cut(s)	312, 350, 477
DdeI	CTNAG	3 cut(s)	387, 771, 1123
DinI	GGCGCC	1 cut(s)	529
DpnI	GATC	2 cut(s)	110, 416
DpnII	GATC	2 cut(s)	108, 414
EaeI	YGGCCR	3 cut(s)	3, 214, 513
Eam1104I	CTCTTC	1 cut(s)	1182
EarI	CTCTTC	1 cut(s)	1182
EciI	GGCGGA	1 cut(s)	316
Ecl136II	GAGCTC	1 cut(s)	250
Eco130I	CCWWGG	1 cut(s)	1171
Eco24I	GRGCYC	3 cut(s)	252, 462, 1237
Eco47I	GGWCC	2 cut(s)	93, 420
Eco53kI	GAGCTC	1 cut(s)	250
Eco57I	CTGAAG	1 cut(s)	1167
EcoICRI	GAGCTC	1 cut(s)	250
EcoO109I	RGGNCCY	1 cut(s)	93
EcoRII	CCWGG	2 cut(s)	89, 562
EcoT14I	CCWWGG	1 cut(s)	1171
EcoT22I	ATGCAT	1 cut(s)	963
EcoT38I	GRGCYC	3 cut(s)	252, 462, 1237
EgeI	GGCGCC	1 cut(s)	529
EheI	GGCGCC	1 cut(s)	529
ErhI	CCWWGG	1 cut(s)	1171
FaeI	CATG	2 cut(s)	307, 961
FalI	AAGNNNNNCTT	4 cut(s)	98, 130, 1140, 1172
FaqI	GGGAC	1 cut(s)	109
FatI	CATG	2 cut(s)	303, 957
FauNDI	CATATG	1 cut(s)	979
FbaI	TGATCA	1 cut(s)	414
FblI	GTMKAC	1 cut(s)	174
Fnu4HI	GCNGC	6 cut(s)	6, 168, 214, 513, 984, 987
FokI	GGATG	3 cut(s)	413, 918, 1214
FriOI	GRGCYC	3 cut(s)	252, 462, 1237
Fsp4HI	GCNGC	6 cut(s)	6, 168, 214, 513, 984, 987
FspBI	CTAG	2 cut(s)	1005, 1292
GlaI	GCGC	2 cut(s)	199, 529
GluI	GCNGC	6 cut(s)	6, 168, 214, 513, 984, 987
HaeII	RGCGCY	1 cut(s)	531
HaeIII	GGCC	4 cut(s)	5, 216, 515, 899
HapII	CCGG	3 cut(s)	210, 330, 677
HhaI	GCGC	2 cut(s)	200, 530
Hin1I	GRCGYC	1 cut(s)	528
Hin1II	CATG	2 cut(s)	307, 961
Hin6I	GCGC	2 cut(s)	198, 528
HinP1I	GCGC	2 cut(s)	198, 528
HincII	GTYRAC	2 cut(s)	175, 1297
HindII	GTYRAC	2 cut(s)	175, 1297
HindIII	AAGCTT	1 cut(s)	533
HinfI	GANTC	3 cut(s)	620, 928, 1160
HpaII	CCGG	3 cut(s)	210, 330, 677
HphI	GGTGA	4 cut(s)	103, 285, 691, 1062
Hpy166II	GTNNAC	2 cut(s)	175, 1297
Hpy188I	TCNGA	4 cut(s)	846, 1062, 1228, 1239
Hpy188III	TCNNGA	2 cut(s)	253, 1005
Hpy8I	GTNNAC	2 cut(s)	175, 1297
Hpy99I	CGWCG	1 cut(s)	176
HpyAV	CCTTC	7 cut(s)	31, 124, 505, 703, 760, 1062, 1079
HpyCH4III	ACNGT	3 cut(s)	349, 434, 954
HpyCH4V	TGCA	8 cut(s)	961, 983, 989, 1016, 1133, 1181, 1247, 1274
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 204, 213, 983, 1124
HpyF3I	CTNAG	3 cut(s)	387, 771, 1123
Hsp92I	GRCGYC	1 cut(s)	528
Hsp92II	CATG	2 cut(s)	307, 961
HspAI	GCGC	2 cut(s)	198, 528
KasI	GGCGCC	1 cut(s)	527
KroI	GCCGGC	1 cut(s)	329
KroNI	GCCGGC	1 cut(s)	331
Ksp22I	TGATCA	1 cut(s)	414
Kzo9I	GATC	2 cut(s)	108, 414
LmnI	GCTCC	2 cut(s)	54, 746
Lsp1109I	GCAGC	2 cut(s)	973, 995
LweI	GCATC	2 cut(s)	589, 837
MaeI	CTAG	2 cut(s)	1005, 1292
MaeIII	GTNAC	1 cut(s)	434
MalI	GATC	2 cut(s)	110, 416
MboI	GATC	2 cut(s)	108, 414
MboII	GAAGA	4 cut(s)	118, 184, 1160, 1199
MfeI	CAATTG	2 cut(s)	574, 1182
MhlI	GDGCHC	3 cut(s)	252, 462, 1237
MluCI	AATT	9 cut(s)	362, 409, 443, 574, 588, 832, 1094, 1182, 1249
Mly113I	GGCGCC	1 cut(s)	528
MmeI	TCCRAC	2 cut(s)	741, 834
Mph1103I	ATGCAT	1 cut(s)	963
MroNI	GCCGGC	1 cut(s)	329
MroXI	GAANNNNTTC	1 cut(s)	395
MseI	TTAA	3 cut(s)	816, 924, 1112
MslI	CAYNNNNRTG	1 cut(s)	824
MspA1I	CMGCKG	1 cut(s)	986
MspI	CCGG	3 cut(s)	210, 330, 677
MspR9I	CCNGG	2 cut(s)	91, 564
MunI	CAATTG	2 cut(s)	574, 1182
Mva1269I	GAATGC	1 cut(s)	961
MvaI	CCWGG	2 cut(s)	91, 564
MwoI	GCNNNNNNNGC	5 cut(s)	11, 204, 213, 983, 1124
NaeI	GCCGGC	1 cut(s)	331
NarI	GGCGCC	1 cut(s)	528
NdeI	CATATG	1 cut(s)	979
NdeII	GATC	2 cut(s)	108, 414
NgoMIV	GCCGGC	1 cut(s)	329
NlaIII	CATG	2 cut(s)	307, 961
NlaIV	GGNNCC	2 cut(s)	208, 529
NsiI	ATGCAT	1 cut(s)	963
PaqCI	CACCTGC	1 cut(s)	1118
PcsI	WCGNNNNNNNCGW	1 cut(s)	171
PctI	GAATGC	1 cut(s)	961
PdiI	GCCGGC	1 cut(s)	331
PdmI	GAANNNNTTC	1 cut(s)	395
PfeI	GAWTC	3 cut(s)	620, 928, 1160
PkrI	GCNGC	6 cut(s)	7, 169, 215, 514, 985, 988
PluTI	GGCGCC	1 cut(s)	531
PpuMI	RGGWCCY	1 cut(s)	93
PsiI	TTATAA	1 cut(s)	1142
Psp124BI	GAGCTC	1 cut(s)	252
Psp5II	RGGWCCY	1 cut(s)	93
Psp6I	CCWGG	2 cut(s)	89, 562
PspGI	CCWGG	2 cut(s)	89, 562
PspN4I	GGNNCC	2 cut(s)	208, 529
PspPI	GGNCC	3 cut(s)	93, 420, 898
PspPPI	RGGWCCY	1 cut(s)	93
PstI	CTGCAG	1 cut(s)	991
PstNI	CAGNNNCTG	1 cut(s)	850
PvuII	CAGCTG	1 cut(s)	986
RsaI	GTAC	3 cut(s)	313, 351, 478
RsaNI	GTAC	3 cut(s)	312, 350, 477
RseI	CAYNNNNRTG	1 cut(s)	824
SacI	GAGCTC	1 cut(s)	252
SalI	GTCGAC	1 cut(s)	173
SaqAI	TTAA	3 cut(s)	816, 924, 1112
SatI	GCNGC	6 cut(s)	6, 168, 214, 513, 984, 987
Sau3AI	GATC	2 cut(s)	108, 414
Sau96I	GGNCC	3 cut(s)	93, 420, 898
ScrFI	CCNGG	2 cut(s)	91, 564
SduI	GDGCHC	3 cut(s)	252, 462, 1237
SfaNI	GCATC	2 cut(s)	589, 837
SfcI	CTRYAG	3 cut(s)	501, 987, 1263
SfoI	GGCGCC	1 cut(s)	529
SgrAI	CRCCGGYG	1 cut(s)	209
SinI	GGWCC	2 cut(s)	93, 420
SmiMI	CAYNNNNRTG	1 cut(s)	824
SmlI	CTYRAG	1 cut(s)	251
SmoI	CTYRAG	1 cut(s)	251
Sse9I	AATT	9 cut(s)	362, 409, 443, 574, 588, 832, 1094, 1182, 1249
SsiI	CCGC	9 cut(s)	6, 12, 168, 213, 315, 327, 370, 512, 713
SspDI	GGCGCC	1 cut(s)	527
SspMI	CTAG	2 cut(s)	1005, 1292
SstI	GAGCTC	1 cut(s)	252
StyD4I	CCNGG	2 cut(s)	89, 562
StyI	CCWWGG	1 cut(s)	1171
TaaI	ACNGT	3 cut(s)	349, 434, 954
TaqI	TCGA	5 cut(s)	174, 342, 618, 707, 965
TasI	AATT	9 cut(s)	362, 409, 443, 574, 588, 832, 1094, 1182, 1249
TauI	GCSGC	4 cut(s)	8, 170, 216, 515
TfiI	GAWTC	3 cut(s)	620, 928, 1160
Tru1I	TTAA	3 cut(s)	816, 924, 1112
Tru9I	TTAA	3 cut(s)	816, 924, 1112
TscAI	CASTG	1 cut(s)	1261
TseI	GCWGC	2 cut(s)	983, 986
TspDTI	ATGAA	2 cut(s)	946, 1167
TspGWI	ACGGA	1 cut(s)	173
TspRI	CASTG	1 cut(s)	1261
VpaK11BI	GGWCC	2 cut(s)	93, 420
XapI	RAATTY	2 cut(s)	832, 1249
XbaI	TCTAGA	1 cut(s)	1004
XcmI	CCANNNNNNNNNTGG	1 cut(s)	470
XmiI	GTMKAC	1 cut(s)	174
XmnI	GAANNNNTTC	1 cut(s)	395
XspI	CTAG	2 cut(s)	1005, 1292
Zsp2I	ATGCAT	1 cut(s)	963

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.