Rh7DG023700

UDP-N-acetyl-D-glucosamine:N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimelyl-D-alanyl-D-alanine-diphosphoundecaprenol 4-beta-N-acetylglucosaminlytransferase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0002289
Physical Location & Seq
Forward (+)
1884490 .. 1885431
942 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG023700.1

Sequence Viewer

Length: 942 bp
ATGGCCGCCGCGGCCGGCTTCGGTCACCTCTCTTTCGTCCCCAAGTTCCCATCAACCCAAGTCAGGACCTTTGACTTCAAGATCACCTCCTGTCTCTCTCTGAGGCAATCAAATGACCCAACTCTCGCCTCCCAAAACGACGCCGTCCCGTTCGGCAGCCTCCGTGTAGTCTTCGCCACCGGTGGCACCGGCGGCCACATATACCCGGCCGTCGCCATAGCCGACGAGCTCAAAAGCACAGACCCCAACGCCCAGATTTTGTTTCTTGGCATACCCAAAAGCATGGAAAGCAAGGCCGTCCCCAACGCCGGCTACGACTTCGCCGCCGTCCACTCCGCCAAGTTGCACCGCCCGATTTTGTCACCCAGAAACGTGTTTCTTCCCTACTACTTGATCAAGTCAATAATATGGAGCTACTTTAAATTGAGGGAGTTTGATCCTCACGTTGTGATCGGAACCGGCGGGTATGTGTCTTTTCCGGTAGGCATTGCGGCGGTGCTGAGAGGAGTGAAGCTTGTGATTCAAGAACAGAATGCTGTTCCCGGAATAGCCAATTGGGTGCTTTCTTTTTTAGCTGATGTTGTGTTTGTGGCTTTTAATTCTACTATTGATTGTTTCCCAAGTGGGAATGGGAAGTGTGTGGTGTGTGGGAATCCGGTGAGGTCGTCCTTAAGGCAGAATGTGTCTAAGGCGGTGGCGAGGGGGCGGTTTTTTCCTAAGTCTGGTGAGATGGGAGAGGAGGAGGTGGAGAAGGTGAAGGTGCTTTTGGTGCTTGGAGGGTCTTTAGGTGCTAATGCCGTGAACATTGCTATGCTGAATTTGTATTATCAGATGCTGTTGGAGAAGGAGGACTTGTTCATCATTTGGCAGACTGGAGTGGAGGCCTATAATGAGATGGAGAGCCTTGTTAAGAACCATCCTCGGCTCCTTTTGAAGCCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00550 ko01100 ko01502 ko04112 map00550 map01100 map01502 map04112
Pfam Domains
Protein Families
Glyco_tran_28_C Glyco_transf_28

Protein Analysis

313

Amino Acids

34.07

Weight (kDa)

8.95

Isoelectric Point (pI)

33.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_28 PF03033 56 - 196 9.5e-32 Glycosyltransferase family 28 N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 185
AccII CGCG 1 cut(s) 11
AclWI GGATC 1 cut(s) 431
AcoI YGGCCR 4 cut(s) 3, 12, 193, 207
AcsI RAATTY 1 cut(s) 817
AcyI GRCGYC 1 cut(s) 141
AdeI CACNNNGTG 1 cut(s) 448
AfiI CCNNNNNNNGG 3 cut(s) 63, 308, 722
AflII CTTAAG 1 cut(s) 670
AflIII ACRYGT 1 cut(s) 372
AgeI ACCGGT 1 cut(s) 179
AgsI TTSAA 3 cut(s) 79, 524, 934
AjuI GAANNNNNNNTTGG 4 cut(s) 538, 570, 749, 781
AloI GAACNNNNNNTCC 2 cut(s) 839, 871
AluBI AGCT 4 cut(s) 229, 414, 514, 575
AluI AGCT 4 cut(s) 229, 414, 514, 575
Alw21I GWGCWC 1 cut(s) 231
Alw26I GTCTC 1 cut(s) 98
AlwI GGATC 1 cut(s) 431
AlwNI CAGNNNCTG 1 cut(s) 835
AoxI GGCC 6 cut(s) 3, 12, 193, 207, 294, 882
ApeKI GCWGC 1 cut(s) 156
ApoI RAATTY 1 cut(s) 817
AsiGI ACCGGT 1 cut(s) 179
AspS9I GGNCC 1 cut(s) 66
AsuC2I CCSGG 2 cut(s) 206, 543
AsuHPI GGTGA 6 cut(s) 17, 76, 354, 670, 737, 766
AvaII GGWCC 1 cut(s) 66
BanI GGYRCC 1 cut(s) 185
BanII GRGCYC 1 cut(s) 231
BbsI GAAGAC 1 cut(s) 163
Bbv12I GWGCWC 1 cut(s) 231
BbvI GCAGC 1 cut(s) 168
BccI CCATC 4 cut(s) 58, 724, 889, 924
BceAI ACGGC 6 cut(s) 128, 194, 281, 311, 782, 922
BclI TGATCA 1 cut(s) 393
BcnI CCSGG 2 cut(s) 206, 543
BcoDI GTCTC 1 cut(s) 98
BfrI CTTAAG 1 cut(s) 670
BglI GCCNNNNNGGC 1 cut(s) 11
BisI GCNGC 7 cut(s) 6, 9, 12, 157, 193, 324, 492
BlsI GCNGC 7 cut(s) 7, 10, 13, 158, 194, 325, 493
Bme1390I CCNGG 2 cut(s) 206, 543
Bme18I GGWCC 1 cut(s) 66
BmgT120I GGNCC 1 cut(s) 66
BmiI GGNNCC 3 cut(s) 187, 457, 926
BmrFI CCNGG 2 cut(s) 206, 543
BmsI GCATC 1 cut(s) 822
BpiI GAAGAC 1 cut(s) 163
BpmI CTGGAG 1 cut(s) 894
BpuMI CCSGG 2 cut(s) 206, 543
BsaHI GRCGYC 1 cut(s) 141
BsaJI CCNNGG 2 cut(s) 9, 920
BsaWI WCCGGW 3 cut(s) 179, 478, 655
BsaXI ACNNNNNCTCC 2 cut(s) 839, 869
Bsc4I CCNNNNNNNGG 3 cut(s) 63, 308, 722
Bse118I RCCGGY 5 cut(s) 14, 179, 188, 308, 458
Bse1I ACTGG 1 cut(s) 877
Bse3DI GCAATG 2 cut(s) 486, 804
BseDI CCNNGG 2 cut(s) 9, 920
BseGI GGATG 1 cut(s) 916
BseLI CCNNNNNNNGG 3 cut(s) 63, 308, 722
BseMI GCAATG 2 cut(s) 486, 804
BseMII CTCAG 2 cut(s) 92, 491
BseNI ACTGG 1 cut(s) 877
BseRI GAGGAG 3 cut(s) 519, 752, 755
BseX3I CGGCCG 2 cut(s) 12, 207
BseXI GCAGC 1 cut(s) 168
Bsh1236I CGCG 1 cut(s) 11
Bsh1285I CGRYCG 2 cut(s) 15, 210
BshFI GGCC 6 cut(s) 5, 14, 195, 209, 296, 884
BshNI GGYRCC 1 cut(s) 185
BshTI ACCGGT 1 cut(s) 179
BsiEI CGRYCG 2 cut(s) 15, 210
BsiHKAI GWGCWC 1 cut(s) 231
BsiSI CCGG 9 cut(s) 15, 180, 189, 206, 309, 459, 479, 543, 656
BslFI GGGAC 3 cut(s) 23, 131, 284
BslI CCNNNNNNNGG 3 cut(s) 63, 308, 722
BsmAI GTCTC 1 cut(s) 98
BsmFI GGGAC 3 cut(s) 23, 131, 284
BsmI GAATGC 1 cut(s) 538
BsnI GGCC 6 cut(s) 5, 14, 195, 209, 296, 884
Bsp1286I GDGCHC 1 cut(s) 231
Bsp143I GATC 4 cut(s) 81, 393, 436, 450
BspANI GGCC 6 cut(s) 5, 14, 195, 209, 296, 884
BspCNI CTCAG 2 cut(s) 93, 492
BspFNI CGCG 1 cut(s) 11
BspLI GGNNCC 3 cut(s) 187, 457, 926
BspPI GGATC 1 cut(s) 431
BspT107I GGYRCC 1 cut(s) 185
BspTI CTTAAG 1 cut(s) 670
BsrDI GCAATG 2 cut(s) 486, 804
BsrFI RCCGGY 5 cut(s) 14, 179, 188, 308, 458
BsrI ACTGG 1 cut(s) 877
BssAI RCCGGY 5 cut(s) 14, 179, 188, 308, 458
BssECI CCNNGG 2 cut(s) 9, 920
BssMI GATC 4 cut(s) 81, 393, 436, 450
BssNI GRCGYC 1 cut(s) 141
BstACI GRCGYC 1 cut(s) 141
BstAFI CTTAAG 1 cut(s) 670
BstC8I GCNNGC 2 cut(s) 16, 310
BstDEI CTNAG 4 cut(s) 101, 500, 687, 717
BstDSI CCRYGG 1 cut(s) 9
BstEII GGTNACC 1 cut(s) 23
BstF5I GGATG 1 cut(s) 916
BstFNI CGCG 1 cut(s) 11
BstKTI GATC 4 cut(s) 84, 396, 439, 453
BstMAI GTCTC 1 cut(s) 98
BstMBI GATC 4 cut(s) 81, 393, 436, 450
BstMCI CGRYCG 2 cut(s) 15, 210
BstMWI GCNNNNNNNGC 4 cut(s) 11, 192, 288, 769
BstPI GGTNACC 1 cut(s) 23
BstSCI CCNGG 2 cut(s) 204, 541
BstUI CGCG 1 cut(s) 11
BstV1I GCAGC 1 cut(s) 168
BstV2I GAAGAC 1 cut(s) 163
BstXI CCANNNNNNTGG 1 cut(s) 283
BstZI CGGCCG 2 cut(s) 12, 207
BsuRI GGCC 6 cut(s) 5, 14, 195, 209, 296, 884
BtgI CCRYGG 1 cut(s) 9
BtsCI GGATG 1 cut(s) 916
Cac8I GCNNGC 2 cut(s) 16, 310
CaiI CAGNNNCTG 1 cut(s) 835
Cfr10I RCCGGY 5 cut(s) 14, 179, 188, 308, 458
Cfr13I GGNCC 1 cut(s) 66
Cfr42I CCGCGG 1 cut(s) 12
CseI GACGC 1 cut(s) 149
CspAI ACCGGT 1 cut(s) 179
CviAII CATG 1 cut(s) 283
DdeI CTNAG 4 cut(s) 101, 500, 687, 717
DpnI GATC 4 cut(s) 83, 395, 438, 452
DpnII GATC 4 cut(s) 81, 393, 436, 450
DraI TTTAAA 1 cut(s) 421
DraIII CACNNNGTG 1 cut(s) 448
EaeI YGGCCR 4 cut(s) 3, 12, 193, 207
EagI CGGCCG 2 cut(s) 12, 207
EciI GGCGGA 1 cut(s) 325
Ecl136II GAGCTC 1 cut(s) 229
EclXI CGGCCG 2 cut(s) 12, 207
Eco147I AGGCCT 1 cut(s) 884
Eco24I GRGCYC 1 cut(s) 231
Eco47I GGWCC 1 cut(s) 66
Eco52I CGGCCG 2 cut(s) 12, 207
Eco53kI GAGCTC 1 cut(s) 229
Eco91I GGTNACC 1 cut(s) 23
EcoICRI GAGCTC 1 cut(s) 229
EcoO109I RGGNCCY 1 cut(s) 66
EcoO65I GGTNACC 1 cut(s) 23
EcoT38I GRGCYC 1 cut(s) 231
FaeI CATG 1 cut(s) 286
FaiI YATR 9 cut(s) 200, 202, 218, 272, 284, 409, 468, 812, 888
FalI AAGNNNNNCTT 2 cut(s) 836, 868
FaqI GGGAC 3 cut(s) 23, 131, 284
FatI CATG 1 cut(s) 282
FauI CCCGC 1 cut(s) 455
FbaI TGATCA 1 cut(s) 393
Fnu4HI GCNGC 7 cut(s) 6, 9, 12, 157, 193, 324, 492
FokI GGATG 1 cut(s) 903
FriOI GRGCYC 1 cut(s) 231
Fsp4HI GCNGC 7 cut(s) 6, 9, 12, 157, 193, 324, 492
GluI GCNGC 7 cut(s) 6, 9, 12, 157, 193, 324, 492
GsuI CTGGAG 1 cut(s) 894
HaeIII GGCC 6 cut(s) 5, 14, 195, 209, 296, 884
HapII CCGG 9 cut(s) 15, 180, 189, 206, 309, 459, 479, 543, 656
HgaI GACGC 1 cut(s) 149
Hin1I GRCGYC 1 cut(s) 141
Hin1II CATG 1 cut(s) 286
HindIII AAGCTT 1 cut(s) 512
HinfI GANTC 2 cut(s) 520, 652
HpaII CCGG 9 cut(s) 15, 180, 189, 206, 309, 459, 479, 543, 656
HphI GGTGA 6 cut(s) 17, 76, 354, 670, 737, 766
Hpy166II GTNNAC 2 cut(s) 331, 802
Hpy188I TCNGA 3 cut(s) 102, 455, 831
Hpy188III TCNNGA 3 cut(s) 64, 79, 524
Hpy8I GTNNAC 2 cut(s) 331, 802
Hpy99I CGWCG 3 cut(s) 143, 215, 227
HpyAV CCTTC 3 cut(s) 745, 751, 838
HpyCH4IV ACGT 2 cut(s) 372, 444
HpyCH4V TGCA 1 cut(s) 346
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 192, 288, 769
HpyF3I CTNAG 4 cut(s) 101, 500, 687, 717
HpySE526I ACGT 2 cut(s) 372, 444
Hsp92I GRCGYC 1 cut(s) 141
Hsp92II CATG 1 cut(s) 286
KroI GCCGGC 2 cut(s) 14, 308
KroNI GCCGGC 2 cut(s) 16, 310
Ksp22I TGATCA 1 cut(s) 393
KspI CCGCGG 1 cut(s) 12
Kzo9I GATC 4 cut(s) 81, 393, 436, 450
LmnI GCTCC 2 cut(s) 411, 930
Lsp1109I GCAGC 1 cut(s) 168
LweI GCATC 1 cut(s) 822
MaeII ACGT 2 cut(s) 372, 444
MaeIII GTNAC 2 cut(s) 23, 360
MalI GATC 4 cut(s) 83, 395, 438, 452
MboI GATC 4 cut(s) 81, 393, 436, 450
MboII GAAGA 2 cut(s) 163, 371
MfeI CAATTG 1 cut(s) 553
MhlI GDGCHC 1 cut(s) 231
MluCI AATT 4 cut(s) 422, 553, 598, 817
MmeI TCCRAC 1 cut(s) 819
MroNI GCCGGC 2 cut(s) 14, 308
MseI TTAA 4 cut(s) 420, 597, 671, 909
MslI CAYNNNNRTG 1 cut(s) 809
MspA1I CMGCKG 1 cut(s) 11
MspCI CTTAAG 1 cut(s) 670
MspI CCGG 9 cut(s) 15, 180, 189, 206, 309, 459, 479, 543, 656
MspR9I CCNGG 2 cut(s) 206, 543
MunI CAATTG 1 cut(s) 553
Mva1269I GAATGC 1 cut(s) 538
MvnI CGCG 1 cut(s) 11
MwoI GCNNNNNNNGC 4 cut(s) 11, 192, 288, 769
NaeI GCCGGC 2 cut(s) 16, 310
NciI CCSGG 2 cut(s) 206, 543
NdeII GATC 4 cut(s) 81, 393, 436, 450
NgoMIV GCCGGC 2 cut(s) 14, 308
NlaIII CATG 1 cut(s) 286
NlaIV GGNNCC 3 cut(s) 187, 457, 926
NmeAIII GCCGAG 1 cut(s) 901
NmuCI GTSAC 2 cut(s) 23, 360
PceI AGGCCT 1 cut(s) 884
PcsI WCGNNNNNNNCGW 2 cut(s) 219, 312
PctI GAATGC 1 cut(s) 538
PdiI GCCGGC 2 cut(s) 16, 310
PfeI GAWTC 2 cut(s) 520, 652
PflFI GACNNNGTC 1 cut(s) 143
PfoI TCCNGGA 1 cut(s) 541
PinAI ACCGGT 1 cut(s) 179
PkrI GCNGC 7 cut(s) 7, 10, 13, 158, 194, 325, 493
PpuMI RGGWCCY 1 cut(s) 66
Psp124BI GAGCTC 1 cut(s) 231
Psp5II RGGWCCY 1 cut(s) 66
PspEI GGTNACC 1 cut(s) 23
PspN4I GGNNCC 3 cut(s) 187, 457, 926
PspPI GGNCC 1 cut(s) 66
PspPPI RGGWCCY 1 cut(s) 66
PstNI CAGNNNCTG 1 cut(s) 835
PsyI GACNNNGTC 1 cut(s) 143
RseI CAYNNNNRTG 1 cut(s) 809
SacI GAGCTC 1 cut(s) 231
SacII CCGCGG 1 cut(s) 12
SaqAI TTAA 4 cut(s) 420, 597, 671, 909
SatI GCNGC 7 cut(s) 6, 9, 12, 157, 193, 324, 492
Sau3AI GATC 4 cut(s) 81, 393, 436, 450
Sau96I GGNCC 1 cut(s) 66
ScrFI CCNGG 2 cut(s) 206, 543
SduI GDGCHC 1 cut(s) 231
SfaNI GCATC 1 cut(s) 822
SfiI GGCCNNNNNGGCC 1 cut(s) 11
Sfr303I CCGCGG 1 cut(s) 12
SgrAI CRCCGGYG 2 cut(s) 179, 188
SgrBI CCGCGG 1 cut(s) 12
SinI GGWCC 1 cut(s) 66
SmiMI CAYNNNNRTG 1 cut(s) 809
SmlI CTYRAG 1 cut(s) 670
SmoI CTYRAG 1 cut(s) 670
Sse9I AATT 4 cut(s) 422, 553, 598, 817
SseBI AGGCCT 1 cut(s) 884
SstI GAGCTC 1 cut(s) 231
StuI AGGCCT 1 cut(s) 884
StyD4I CCNGG 2 cut(s) 204, 541
TaiI ACGT 2 cut(s) 375, 447
TaqII GACCGA 1 cut(s) 11
TasI AATT 4 cut(s) 422, 553, 598, 817
TauI GCSGC 6 cut(s) 8, 11, 14, 195, 326, 494
TfiI GAWTC 2 cut(s) 520, 652
Tru1I TTAA 4 cut(s) 420, 597, 671, 909
Tru9I TTAA 4 cut(s) 420, 597, 671, 909
TseFI GTSAC 2 cut(s) 23, 360
TseI GCWGC 1 cut(s) 156
Tsp45I GTSAC 2 cut(s) 23, 360
TspDTI ATGAA 1 cut(s) 847
TspGWI ACGGA 1 cut(s) 152
Tth111I GACNNNGTC 1 cut(s) 143
Vha464I CTTAAG 1 cut(s) 670
VpaK11BI GGWCC 1 cut(s) 66
XapI RAATTY 1 cut(s) 817
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.