RchiOBHm_Chr4g0437271

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0018591
Physical Location & Seq
Forward (+)
60427567 .. 60428444
878 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ40553

Sequence Viewer

Length: 372 bp
ATGGTCAAGAAACAAATCGACCACATTACTCTTTCATATATACTACAACATCATCACTGCAAAAAGGCGTTTCTCTCTCAAATCTCAAACACCCACAAAAGCGAGCTCCATATTACTTCAGGTTCTGTAATTGGCAACAGATCGATGGATACTGCGAGCAGTCATGCTAATTTGATAAGCAAGAACATCATGGGAAAGGGCAAGGAAGAGAGTAAGGGATCATCGGTACTGAGTCCCTTCACTTGGTGCTTCTTCGGCTCAGATGGTGAAGGTGATAATGCAAGGGGCTCAAAGGCTGTAACTGGGCCAGAGGCAGCCATGGTTGCTGCTGCGAAGCATTTCTCTTCAGCCCACAAAGTTCGATTCAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

123

Amino Acids

13.3

Weight (kDa)

9.55

Isoelectric Point (pI)

41.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018591)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0437271
rosa_laevigata RLG00000006452
rosa_roxburghii Rroxscaffold_5G00378390 Rroxscaffold_5G00378400
rosa_rugosa Rorug04G0298900.1 Rorug04G0299100
rosa_samantha Rh4BG363700 Rh4CG377900 Rh4CG378100 Rh4DG357700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 226
AcuI CTGAAG 2 cut(s) 102, 330
AdeI CACNNNGTG 1 cut(s) 246
AfaI GTAC 1 cut(s) 228
AfiI CCNNNNNNNGG 1 cut(s) 243
AgsI TTSAA 1 cut(s) 367
AluBI AGCT 1 cut(s) 106
AluI AGCT 1 cut(s) 106
Alw21I GWGCWC 1 cut(s) 108
AlwI GGATC 1 cut(s) 226
AlwNI CAGNNNCTG 1 cut(s) 125
AoxI GGCC 1 cut(s) 305
ApeKI GCWGC 3 cut(s) 314, 326, 329
Asp700I GAANNNNTTC 1 cut(s) 338
AspS9I GGNCC 1 cut(s) 305
AsuHPI GGTGA 2 cut(s) 278, 284
BanII GRGCYC 2 cut(s) 108, 290
Bbv12I GWGCWC 1 cut(s) 108
BbvI GCAGC 3 cut(s) 313, 316, 326
BccI CCATC 2 cut(s) 139, 257
BciVI GTATCC 1 cut(s) 142
BfaI CTAG 1 cut(s) 370
BfuI GTATCC 1 cut(s) 142
BisI GCNGC 3 cut(s) 315, 327, 330
BlsI GCNGC 3 cut(s) 316, 328, 331
BmgT120I GGNCC 1 cut(s) 305
BmrI ACTGGG 1 cut(s) 312
BmuI ACTGGG 1 cut(s) 312
Bsa29I ATCGAT 1 cut(s) 143
BsaJI CCNNGG 1 cut(s) 318
Bsc4I CCNNNNNNNGG 1 cut(s) 243
Bse1I ACTGG 1 cut(s) 307
BseCI ATCGAT 1 cut(s) 143
BseDI CCNNGG 1 cut(s) 318
BseLI CCNNNNNNNGG 1 cut(s) 243
BseMII CTCAG 2 cut(s) 221, 273
BseNI ACTGG 1 cut(s) 307
BseXI GCAGC 3 cut(s) 313, 316, 326
BshFI GGCC 1 cut(s) 307
BshVI ATCGAT 1 cut(s) 143
BsiHKAI GWGCWC 1 cut(s) 108
BslFI GGGAC 1 cut(s) 219
BslI CCNNNNNNNGG 1 cut(s) 243
BsmFI GGGAC 1 cut(s) 219
BsnI GGCC 1 cut(s) 307
Bsp1286I GDGCHC 2 cut(s) 108, 290
Bsp143I GATC 2 cut(s) 140, 218
Bsp19I CCATGG 1 cut(s) 318
BspANI GGCC 1 cut(s) 307
BspCNI CTCAG 2 cut(s) 222, 272
BspDI ATCGAT 1 cut(s) 143
BspPI GGATC 1 cut(s) 226
BsrI ACTGG 1 cut(s) 307
BssECI CCNNGG 1 cut(s) 318
BssMI GATC 2 cut(s) 140, 218
BssT1I CCWWGG 1 cut(s) 318
Bst6I CTCTTC 2 cut(s) 201, 349
BstC8I GCNNGC 2 cut(s) 104, 157
BstDEI CTNAG 2 cut(s) 230, 259
BstDSI CCRYGG 1 cut(s) 318
BstKTI GATC 2 cut(s) 143, 221
BstMBI GATC 2 cut(s) 140, 218
BstMWI GCNNNNNNNGC 2 cut(s) 255, 323
BstV1I GCAGC 3 cut(s) 313, 316, 326
Bsu15I ATCGAT 1 cut(s) 143
BsuI GTATCC 1 cut(s) 142
BsuRI GGCC 1 cut(s) 307
BsuTUI ATCGAT 1 cut(s) 143
BtgI CCRYGG 1 cut(s) 318
BtsI GCAGTG 1 cut(s) 55
BtsIMutI CAGTG 1 cut(s) 55
Cac8I GCNNGC 2 cut(s) 104, 157
CaiI CAGNNNCTG 1 cut(s) 125
Cfr13I GGNCC 1 cut(s) 305
ClaI ATCGAT 1 cut(s) 143
Csp6I GTAC 1 cut(s) 227
CviAII CATG 3 cut(s) 164, 190, 319
CviJI RGCY 7 cut(s) 106, 258, 288, 296, 307, 317, 350
CviKI_1 RGCY 7 cut(s) 106, 258, 288, 296, 307, 317, 350
CviQI GTAC 1 cut(s) 227
DdeI CTNAG 2 cut(s) 230, 259
DpnI GATC 2 cut(s) 142, 220
DpnII GATC 2 cut(s) 140, 218
DraIII CACNNNGTG 1 cut(s) 246
Eam1104I CTCTTC 2 cut(s) 201, 349
EarI CTCTTC 2 cut(s) 201, 349
Ecl136II GAGCTC 1 cut(s) 106
Eco130I CCWWGG 1 cut(s) 318
Eco24I GRGCYC 2 cut(s) 108, 290
Eco53kI GAGCTC 1 cut(s) 106
Eco57I CTGAAG 2 cut(s) 102, 330
EcoICRI GAGCTC 1 cut(s) 106
EcoT14I CCWWGG 1 cut(s) 318
EcoT38I GRGCYC 2 cut(s) 108, 290
ErhI CCWWGG 1 cut(s) 318
FaeI CATG 3 cut(s) 167, 193, 322
FaiI YATR 7 cut(s) 37, 39, 41, 111, 165, 191, 320
FaqI GGGAC 1 cut(s) 219
FatI CATG 3 cut(s) 163, 189, 318
Fnu4HI GCNGC 3 cut(s) 315, 327, 330
FriOI GRGCYC 2 cut(s) 108, 290
Fsp4HI GCNGC 3 cut(s) 315, 327, 330
FspBI CTAG 1 cut(s) 370
GluI GCNGC 3 cut(s) 315, 327, 330
HaeIII GGCC 1 cut(s) 307
Hin1II CATG 3 cut(s) 167, 193, 322
HinfI GANTC 2 cut(s) 232, 363
HphI GGTGA 2 cut(s) 278, 284
Hpy188I TCNGA 1 cut(s) 262
Hpy188III TCNNGA 1 cut(s) 7
HpyAV CCTTC 2 cut(s) 247, 263
HpyCH4V TGCA 2 cut(s) 60, 281
HpyF10VI GCNNNNNNNGC 2 cut(s) 255, 323
HpyF3I CTNAG 2 cut(s) 230, 259
Hsp92II CATG 3 cut(s) 167, 193, 322
Kzo9I GATC 2 cut(s) 140, 218
LmnI GCTCC 1 cut(s) 111
LpnPI CCDG 3 cut(s) 105, 288, 321
Lsp1109I GCAGC 3 cut(s) 313, 316, 326
MaeI CTAG 1 cut(s) 370
MaeIII GTNAC 1 cut(s) 298
MalI GATC 2 cut(s) 142, 220
MboI GATC 2 cut(s) 140, 218
MboII GAAGA 3 cut(s) 218, 244, 336
MhlI GDGCHC 2 cut(s) 108, 290
MluCI AATT 2 cut(s) 129, 169
MlyI GAGTC 1 cut(s) 241
MnlI CCTC 1 cut(s) 304
MroXI GAANNNNTTC 1 cut(s) 338
MwoI GCNNNNNNNGC 2 cut(s) 255, 323
NcoI CCATGG 1 cut(s) 318
NdeII GATC 2 cut(s) 140, 218
NlaIII CATG 3 cut(s) 167, 193, 322
PdmI GAANNNNTTC 1 cut(s) 338
PfeI GAWTC 1 cut(s) 363
PkrI GCNGC 3 cut(s) 316, 328, 331
PleI GAGTC 1 cut(s) 240
PpsI GAGTC 1 cut(s) 240
Psp124BI GAGCTC 1 cut(s) 108
PspPI GGNCC 1 cut(s) 305
PstNI CAGNNNCTG 1 cut(s) 125
RsaI GTAC 1 cut(s) 228
RsaNI GTAC 1 cut(s) 227
SacI GAGCTC 1 cut(s) 108
SatI GCNGC 3 cut(s) 315, 327, 330
Sau3AI GATC 2 cut(s) 140, 218
Sau96I GGNCC 1 cut(s) 305
SchI GAGTC 1 cut(s) 241
SduI GDGCHC 2 cut(s) 108, 290
SetI ASST 3 cut(s) 108, 124, 274
Sse9I AATT 2 cut(s) 129, 169
SspMI CTAG 1 cut(s) 370
SstI GAGCTC 1 cut(s) 108
StyI CCWWGG 1 cut(s) 318
TaqI TCGA 3 cut(s) 18, 143, 361
TasI AATT 2 cut(s) 129, 169
TfiI GAWTC 1 cut(s) 363
TscAI CASTG 1 cut(s) 62
TseI GCWGC 3 cut(s) 314, 326, 329
TspDTI ATGAA 1 cut(s) 24
TspRI CASTG 1 cut(s) 62
XmnI GAANNNNTTC 1 cut(s) 338
XspI CTAG 1 cut(s) 370
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.