Rroxscaffold_5G00378390

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0018591
Physical Location & Seq
Forward (+)
58894699 .. 58895070
372 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00378390.1

Sequence Viewer

Length: 300 bp
ATGGTCAAGAAACAAATCGACCACATTACTCTTTCATATATACTACAACATCATCACTGCAGAAAGGCGTTTCTCTCTCAAATCTCAAACACCCACAAAAGCGAGCTCCATATTACTTCAGGTTCTGGCAAGGAAGAGAGTAAGGGATCATCAGTGCTGAGTCCCTTCACTTGGTGCTTCTTTGGCTCAGACGGTGAAGGTGATAATGCAAGGGGCTCAAAGGCTGTAACTGGGCCAGAGGCAGCCATGGTTGCTGCTGCGAAGCATTTCTCTTCAGCACATAAAGTTCGATTCAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

99

Amino Acids

10.8

Weight (kDa)

9.3

Isoelectric Point (pI)

41.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018591)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0437271
rosa_laevigata RLG00000006452
rosa_roxburghii Rroxscaffold_5G00378390 Rroxscaffold_5G00378400
rosa_rugosa Rorug04G0298900.1 Rorug04G0299100
rosa_samantha Rh4BG363700 Rh4CG377900 Rh4CG378100 Rh4DG357700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 154
AcuI CTGAAG 2 cut(s) 102, 258
AdeI CACNNNGTG 1 cut(s) 174
AfiI CCNNNNNNNGG 1 cut(s) 171
AgsI TTSAA 1 cut(s) 295
AluBI AGCT 1 cut(s) 106
AluI AGCT 1 cut(s) 106
Alw21I GWGCWC 1 cut(s) 108
AlwI GGATC 1 cut(s) 154
AlwNI CAGNNNCTG 1 cut(s) 125
AoxI GGCC 1 cut(s) 233
ApeKI GCWGC 3 cut(s) 242, 254, 257
Asp700I GAANNNNTTC 1 cut(s) 266
AspS9I GGNCC 1 cut(s) 233
AsuHPI GGTGA 2 cut(s) 206, 212
BanII GRGCYC 2 cut(s) 108, 218
Bbv12I GWGCWC 1 cut(s) 108
BbvI GCAGC 3 cut(s) 241, 244, 254
BfaI CTAG 1 cut(s) 298
BfmI CTRYAG 1 cut(s) 58
BisI GCNGC 3 cut(s) 243, 255, 258
BlsI GCNGC 3 cut(s) 244, 256, 259
BmgT120I GGNCC 1 cut(s) 233
BmrI ACTGGG 1 cut(s) 240
BmuI ACTGGG 1 cut(s) 240
BsaJI CCNNGG 1 cut(s) 246
Bsc4I CCNNNNNNNGG 1 cut(s) 171
Bse1I ACTGG 1 cut(s) 235
BseDI CCNNGG 1 cut(s) 246
BseLI CCNNNNNNNGG 1 cut(s) 171
BseMII CTCAG 2 cut(s) 149, 201
BseNI ACTGG 1 cut(s) 235
BseXI GCAGC 3 cut(s) 241, 244, 254
BshFI GGCC 1 cut(s) 235
BsiHKAI GWGCWC 1 cut(s) 108
BslFI GGGAC 1 cut(s) 147
BslI CCNNNNNNNGG 1 cut(s) 171
BsmFI GGGAC 1 cut(s) 147
BsnI GGCC 1 cut(s) 235
Bsp1286I GDGCHC 2 cut(s) 108, 218
Bsp143I GATC 1 cut(s) 146
Bsp19I CCATGG 1 cut(s) 246
BspANI GGCC 1 cut(s) 235
BspCNI CTCAG 2 cut(s) 150, 200
BspMAI CTGCAG 1 cut(s) 62
BspPI GGATC 1 cut(s) 154
BsrI ACTGG 1 cut(s) 235
BssECI CCNNGG 1 cut(s) 246
BssMI GATC 1 cut(s) 146
BssT1I CCWWGG 1 cut(s) 246
Bst4CI ACNGT 1 cut(s) 194
Bst6I CTCTTC 2 cut(s) 129, 277
BstC8I GCNNGC 1 cut(s) 104
BstDEI CTNAG 2 cut(s) 158, 187
BstDSI CCRYGG 1 cut(s) 246
BstKTI GATC 1 cut(s) 149
BstMBI GATC 1 cut(s) 146
BstMWI GCNNNNNNNGC 2 cut(s) 183, 251
BstSFI CTRYAG 1 cut(s) 58
BstV1I GCAGC 3 cut(s) 241, 244, 254
BsuRI GGCC 1 cut(s) 235
BtgI CCRYGG 1 cut(s) 246
BtsI GCAGTG 1 cut(s) 55
BtsIMutI CAGTG 2 cut(s) 55, 159
Cac8I GCNNGC 1 cut(s) 104
CaiI CAGNNNCTG 1 cut(s) 125
Cfr13I GGNCC 1 cut(s) 233
CviAII CATG 1 cut(s) 247
CviJI RGCY 6 cut(s) 106, 186, 216, 224, 235, 245
CviKI_1 RGCY 6 cut(s) 106, 186, 216, 224, 235, 245
DdeI CTNAG 2 cut(s) 158, 187
DpnI GATC 1 cut(s) 148
DpnII GATC 1 cut(s) 146
DraIII CACNNNGTG 1 cut(s) 174
Eam1104I CTCTTC 2 cut(s) 129, 277
EarI CTCTTC 2 cut(s) 129, 277
Ecl136II GAGCTC 1 cut(s) 106
Eco130I CCWWGG 1 cut(s) 246
Eco24I GRGCYC 2 cut(s) 108, 218
Eco53kI GAGCTC 1 cut(s) 106
Eco57I CTGAAG 2 cut(s) 102, 258
EcoICRI GAGCTC 1 cut(s) 106
EcoT14I CCWWGG 1 cut(s) 246
EcoT38I GRGCYC 2 cut(s) 108, 218
ErhI CCWWGG 1 cut(s) 246
FaeI CATG 1 cut(s) 250
FaiI YATR 6 cut(s) 37, 39, 41, 111, 248, 282
FaqI GGGAC 1 cut(s) 147
FatI CATG 1 cut(s) 246
Fnu4HI GCNGC 3 cut(s) 243, 255, 258
FriOI GRGCYC 2 cut(s) 108, 218
Fsp4HI GCNGC 3 cut(s) 243, 255, 258
FspBI CTAG 1 cut(s) 298
GluI GCNGC 3 cut(s) 243, 255, 258
HaeIII GGCC 1 cut(s) 235
Hin1II CATG 1 cut(s) 250
HinfI GANTC 2 cut(s) 160, 291
HphI GGTGA 2 cut(s) 206, 212
Hpy188I TCNGA 1 cut(s) 190
Hpy188III TCNNGA 1 cut(s) 7
HpyAV CCTTC 2 cut(s) 175, 191
HpyCH4III ACNGT 1 cut(s) 194
HpyCH4V TGCA 2 cut(s) 60, 209
HpyF10VI GCNNNNNNNGC 2 cut(s) 183, 251
HpyF3I CTNAG 2 cut(s) 158, 187
Hsp92II CATG 1 cut(s) 250
Kzo9I GATC 1 cut(s) 146
LmnI GCTCC 1 cut(s) 111
LpnPI CCDG 4 cut(s) 105, 111, 216, 249
Lsp1109I GCAGC 3 cut(s) 241, 244, 254
MaeI CTAG 1 cut(s) 298
MaeIII GTNAC 1 cut(s) 226
MalI GATC 1 cut(s) 148
MboI GATC 1 cut(s) 146
MboII GAAGA 2 cut(s) 146, 264
MhlI GDGCHC 2 cut(s) 108, 218
MlyI GAGTC 1 cut(s) 169
MnlI CCTC 1 cut(s) 232
MroXI GAANNNNTTC 1 cut(s) 266
MwoI GCNNNNNNNGC 2 cut(s) 183, 251
NcoI CCATGG 1 cut(s) 246
NdeII GATC 1 cut(s) 146
NlaIII CATG 1 cut(s) 250
PdmI GAANNNNTTC 1 cut(s) 266
PfeI GAWTC 1 cut(s) 291
PkrI GCNGC 3 cut(s) 244, 256, 259
PleI GAGTC 1 cut(s) 168
PpsI GAGTC 1 cut(s) 168
Psp124BI GAGCTC 1 cut(s) 108
PspPI GGNCC 1 cut(s) 233
PstI CTGCAG 1 cut(s) 62
PstNI CAGNNNCTG 1 cut(s) 125
SacI GAGCTC 1 cut(s) 108
SatI GCNGC 3 cut(s) 243, 255, 258
Sau3AI GATC 1 cut(s) 146
Sau96I GGNCC 1 cut(s) 233
SchI GAGTC 1 cut(s) 169
SduI GDGCHC 2 cut(s) 108, 218
SetI ASST 3 cut(s) 108, 124, 202
SfcI CTRYAG 1 cut(s) 58
SspMI CTAG 1 cut(s) 298
SstI GAGCTC 1 cut(s) 108
StyI CCWWGG 1 cut(s) 246
TaaI ACNGT 1 cut(s) 194
TaqI TCGA 2 cut(s) 18, 289
TfiI GAWTC 1 cut(s) 291
TscAI CASTG 2 cut(s) 62, 159
TseI GCWGC 3 cut(s) 242, 254, 257
TspDTI ATGAA 1 cut(s) 24
TspRI CASTG 2 cut(s) 62, 159
XmnI GAANNNNTTC 1 cut(s) 266
XspI CTAG 1 cut(s) 298
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.