Rh4DG357700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0018591
Physical Location & Seq
Forward (+)
57883715 .. 57884098
384 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG357700.1

Sequence Viewer

Length: 384 bp
ATGGGTTTCATAATGGTCAAGAAACAAATCGACCACATTACTCTTTCATATATACTACAACATCATCACTGCAAAAAGGCGTTTCTCTCTCAAATCTCAAACACCCACAAAAGCGAGCTCCATATTACTTCAGGTTCTGTAATTGGCAACAGATCGATGGATACTGCAAGCAGTCATGCTAATTTGATAAGCAAGAACATCATGGGAAAGGGCAAGGAAGAGAGTAAGGGATCATCGGTACTGAGTCCCTTCACTTGGTGCTTCTTCGGCTCAGATGGTGAAGGTGATAATGCAAGGGGCTCAAAGGCTGTAACTGGGCCAGAGGCAGCCATGGTTGCTGCTGCGAAGCATTTCTCTTCAGCCCACAAAGTTCGATTCAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

127

Amino Acids

13.75

Weight (kDa)

9.55

Isoelectric Point (pI)

40.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018591)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0437271
rosa_laevigata RLG00000006452
rosa_roxburghii Rroxscaffold_5G00378390 Rroxscaffold_5G00378400
rosa_rugosa Rorug04G0298900.1 Rorug04G0299100
rosa_samantha Rh4BG363700 Rh4CG377900 Rh4CG378100 Rh4DG357700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 238
AcuI CTGAAG 2 cut(s) 114, 342
AdeI CACNNNGTG 1 cut(s) 258
AfaI GTAC 1 cut(s) 240
AfiI CCNNNNNNNGG 1 cut(s) 255
AgsI TTSAA 1 cut(s) 379
AluBI AGCT 1 cut(s) 118
AluI AGCT 1 cut(s) 118
Alw21I GWGCWC 1 cut(s) 120
AlwI GGATC 1 cut(s) 238
AlwNI CAGNNNCTG 1 cut(s) 137
AoxI GGCC 1 cut(s) 317
ApeKI GCWGC 3 cut(s) 326, 338, 341
Asp700I GAANNNNTTC 1 cut(s) 350
AspS9I GGNCC 1 cut(s) 317
AsuHPI GGTGA 2 cut(s) 290, 296
BanII GRGCYC 2 cut(s) 120, 302
Bbv12I GWGCWC 1 cut(s) 120
BbvI GCAGC 3 cut(s) 325, 328, 338
BccI CCATC 2 cut(s) 151, 269
BciVI GTATCC 1 cut(s) 154
BfaI CTAG 1 cut(s) 382
BfuI GTATCC 1 cut(s) 154
BisI GCNGC 3 cut(s) 327, 339, 342
BlsI GCNGC 3 cut(s) 328, 340, 343
BmgT120I GGNCC 1 cut(s) 317
BmrI ACTGGG 1 cut(s) 324
BmuI ACTGGG 1 cut(s) 324
Bsa29I ATCGAT 1 cut(s) 155
BsaJI CCNNGG 1 cut(s) 330
Bsc4I CCNNNNNNNGG 1 cut(s) 255
Bse1I ACTGG 1 cut(s) 319
BseCI ATCGAT 1 cut(s) 155
BseDI CCNNGG 1 cut(s) 330
BseLI CCNNNNNNNGG 1 cut(s) 255
BseMII CTCAG 2 cut(s) 233, 285
BseNI ACTGG 1 cut(s) 319
BseXI GCAGC 3 cut(s) 325, 328, 338
BshFI GGCC 1 cut(s) 319
BshVI ATCGAT 1 cut(s) 155
BsiHKAI GWGCWC 1 cut(s) 120
BslFI GGGAC 1 cut(s) 231
BslI CCNNNNNNNGG 1 cut(s) 255
BsmFI GGGAC 1 cut(s) 231
BsnI GGCC 1 cut(s) 319
Bsp1286I GDGCHC 2 cut(s) 120, 302
Bsp143I GATC 2 cut(s) 152, 230
Bsp19I CCATGG 1 cut(s) 330
BspANI GGCC 1 cut(s) 319
BspCNI CTCAG 2 cut(s) 234, 284
BspDI ATCGAT 1 cut(s) 155
BspPI GGATC 1 cut(s) 238
BsrI ACTGG 1 cut(s) 319
BssECI CCNNGG 1 cut(s) 330
BssMI GATC 2 cut(s) 152, 230
BssT1I CCWWGG 1 cut(s) 330
Bst6I CTCTTC 2 cut(s) 213, 361
BstC8I GCNNGC 2 cut(s) 116, 169
BstDEI CTNAG 2 cut(s) 242, 271
BstDSI CCRYGG 1 cut(s) 330
BstKTI GATC 2 cut(s) 155, 233
BstMBI GATC 2 cut(s) 152, 230
BstMWI GCNNNNNNNGC 2 cut(s) 267, 335
BstV1I GCAGC 3 cut(s) 325, 328, 338
Bsu15I ATCGAT 1 cut(s) 155
BsuI GTATCC 1 cut(s) 154
BsuRI GGCC 1 cut(s) 319
BsuTUI ATCGAT 1 cut(s) 155
BtgI CCRYGG 1 cut(s) 330
BtsI GCAGTG 1 cut(s) 67
BtsIMutI CAGTG 1 cut(s) 67
Cac8I GCNNGC 2 cut(s) 116, 169
CaiI CAGNNNCTG 1 cut(s) 137
Cfr13I GGNCC 1 cut(s) 317
ClaI ATCGAT 1 cut(s) 155
Csp6I GTAC 1 cut(s) 239
CviAII CATG 3 cut(s) 176, 202, 331
CviJI RGCY 7 cut(s) 118, 270, 300, 308, 319, 329, 362
CviKI_1 RGCY 7 cut(s) 118, 270, 300, 308, 319, 329, 362
CviQI GTAC 1 cut(s) 239
DdeI CTNAG 2 cut(s) 242, 271
DpnI GATC 2 cut(s) 154, 232
DpnII GATC 2 cut(s) 152, 230
DraIII CACNNNGTG 1 cut(s) 258
Eam1104I CTCTTC 2 cut(s) 213, 361
EarI CTCTTC 2 cut(s) 213, 361
Ecl136II GAGCTC 1 cut(s) 118
Eco130I CCWWGG 1 cut(s) 330
Eco24I GRGCYC 2 cut(s) 120, 302
Eco53kI GAGCTC 1 cut(s) 118
Eco57I CTGAAG 2 cut(s) 114, 342
EcoICRI GAGCTC 1 cut(s) 118
EcoT14I CCWWGG 1 cut(s) 330
EcoT38I GRGCYC 2 cut(s) 120, 302
ErhI CCWWGG 1 cut(s) 330
FaeI CATG 3 cut(s) 179, 205, 334
FaiI YATR 8 cut(s) 11, 49, 51, 53, 123, 177, 203, 332
FaqI GGGAC 1 cut(s) 231
FatI CATG 3 cut(s) 175, 201, 330
Fnu4HI GCNGC 3 cut(s) 327, 339, 342
FriOI GRGCYC 2 cut(s) 120, 302
Fsp4HI GCNGC 3 cut(s) 327, 339, 342
FspBI CTAG 1 cut(s) 382
GluI GCNGC 3 cut(s) 327, 339, 342
HaeIII GGCC 1 cut(s) 319
Hin1II CATG 3 cut(s) 179, 205, 334
HinfI GANTC 2 cut(s) 244, 375
HphI GGTGA 2 cut(s) 290, 296
Hpy188I TCNGA 1 cut(s) 274
Hpy188III TCNNGA 1 cut(s) 19
HpyAV CCTTC 2 cut(s) 259, 275
HpyCH4V TGCA 3 cut(s) 72, 167, 293
HpyF10VI GCNNNNNNNGC 2 cut(s) 267, 335
HpyF3I CTNAG 2 cut(s) 242, 271
Hsp92II CATG 3 cut(s) 179, 205, 334
Kzo9I GATC 2 cut(s) 152, 230
LmnI GCTCC 1 cut(s) 123
LpnPI CCDG 3 cut(s) 117, 300, 333
Lsp1109I GCAGC 3 cut(s) 325, 328, 338
MaeI CTAG 1 cut(s) 382
MaeIII GTNAC 1 cut(s) 310
MalI GATC 2 cut(s) 154, 232
MboI GATC 2 cut(s) 152, 230
MboII GAAGA 3 cut(s) 230, 256, 348
MhlI GDGCHC 2 cut(s) 120, 302
MluCI AATT 2 cut(s) 141, 181
MlyI GAGTC 1 cut(s) 253
MnlI CCTC 1 cut(s) 316
MroXI GAANNNNTTC 1 cut(s) 350
MwoI GCNNNNNNNGC 2 cut(s) 267, 335
NcoI CCATGG 1 cut(s) 330
NdeII GATC 2 cut(s) 152, 230
NlaIII CATG 3 cut(s) 179, 205, 334
PdmI GAANNNNTTC 1 cut(s) 350
PfeI GAWTC 1 cut(s) 375
PkrI GCNGC 3 cut(s) 328, 340, 343
PleI GAGTC 1 cut(s) 252
PpsI GAGTC 1 cut(s) 252
Psp124BI GAGCTC 1 cut(s) 120
PspPI GGNCC 1 cut(s) 317
PstNI CAGNNNCTG 1 cut(s) 137
RsaI GTAC 1 cut(s) 240
RsaNI GTAC 1 cut(s) 239
SacI GAGCTC 1 cut(s) 120
SatI GCNGC 3 cut(s) 327, 339, 342
Sau3AI GATC 2 cut(s) 152, 230
Sau96I GGNCC 1 cut(s) 317
SchI GAGTC 1 cut(s) 253
SduI GDGCHC 2 cut(s) 120, 302
SetI ASST 3 cut(s) 120, 136, 286
Sse9I AATT 2 cut(s) 141, 181
SspMI CTAG 1 cut(s) 382
SstI GAGCTC 1 cut(s) 120
StyI CCWWGG 1 cut(s) 330
TaqI TCGA 3 cut(s) 30, 155, 373
TasI AATT 2 cut(s) 141, 181
TfiI GAWTC 1 cut(s) 375
TscAI CASTG 1 cut(s) 74
TseI GCWGC 3 cut(s) 326, 338, 341
TspDTI ATGAA 1 cut(s) 36
TspRI CASTG 1 cut(s) 74
XmnI GAANNNNTTC 1 cut(s) 350
XspI CTAG 1 cut(s) 382
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.