RLG00000006452

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0018591
Physical Location & Seq
Reverse (-)
7351970 .. 7352320
351 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006452

Sequence Viewer

Length: 351 bp
ATGGGTTTCAAAATGATCAAGAAACAATTCGAGCACTTCAAATTTTCAGACTACTACATCATTACTTCAGAATCCTCTGAAGCTCTAGATTGGTTCTGGTTCTGTACATTGGCACAGACAGATATTGCAAGTCATACTAATTTGATAAGTAATAAGATCATGGGAAAGAGGAAAAAAGAGAGCAGGGGATCATCAATTCTGAGTCCCTTCACTTGGTGCTTCTTTGGCTCAGCTGGTACTGCCGGTAAAAATGGAAGGGGCTCAAAAGTTGTACGGACGACTGGACCAAAGGCAACCATGGTTGCAGCTGCAGAGCACTTCTCTTCAGCCCACAAAGTTCAATACAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

117

Amino Acids

13.0

Weight (kDa)

9.74

Isoelectric Point (pI)

26.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018591)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0437271
rosa_laevigata RLG00000006452
rosa_roxburghii Rroxscaffold_5G00378390 Rroxscaffold_5G00378400
rosa_rugosa Rorug04G0298900.1 Rorug04G0299100
rosa_samantha Rh4BG363700 Rh4CG377900 Rh4CG378100 Rh4DG357700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 196
AcsI RAATTY 1 cut(s) 41
AcuI CTGAAG 3 cut(s) 51, 99, 309
AdeI CACNNNGTG 1 cut(s) 216
AfaI GTAC 3 cut(s) 106, 238, 273
AfiI CCNNNNNNNGG 1 cut(s) 213
AgsI TTSAA 3 cut(s) 10, 40, 341
AluBI AGCT 3 cut(s) 83, 233, 308
AluI AGCT 3 cut(s) 83, 233, 308
Alw21I GWGCWC 2 cut(s) 36, 318
AlwI GGATC 1 cut(s) 196
ApeKI GCWGC 2 cut(s) 305, 308
ApoI RAATTY 1 cut(s) 41
Asp700I GAANNNNTTC 1 cut(s) 26
AspS9I GGNCC 1 cut(s) 284
AvaII GGWCC 1 cut(s) 284
BanII GRGCYC 1 cut(s) 263
Bbv12I GWGCWC 2 cut(s) 36, 318
BbvI GCAGC 2 cut(s) 295, 317
BclI TGATCA 1 cut(s) 15
BfaI CTAG 2 cut(s) 86, 349
BfmI CTRYAG 1 cut(s) 309
BisI GCNGC 2 cut(s) 306, 309
BlpI GCTNAGC 1 cut(s) 229
BlsI GCNGC 2 cut(s) 307, 310
Bme18I GGWCC 1 cut(s) 284
BmgT120I GGNCC 1 cut(s) 284
BplI GAGNNNNNCTC 2 cut(s) 305, 337
Bpu1102I GCTNAGC 1 cut(s) 229
BsaJI CCNNGG 1 cut(s) 297
Bsc4I CCNNNNNNNGG 1 cut(s) 213
Bse118I RCCGGY 1 cut(s) 242
Bse1I ACTGG 1 cut(s) 286
BseDI CCNNGG 1 cut(s) 297
BseLI CCNNNNNNNGG 1 cut(s) 213
BseMII CTCAG 2 cut(s) 191, 243
BseNI ACTGG 1 cut(s) 286
BseXI GCAGC 2 cut(s) 295, 317
BsiHKAI GWGCWC 2 cut(s) 36, 318
BsiSI CCGG 1 cut(s) 243
BslFI GGGAC 1 cut(s) 189
BslI CCNNNNNNNGG 1 cut(s) 213
BsmFI GGGAC 1 cut(s) 189
Bsp1286I GDGCHC 3 cut(s) 36, 263, 318
Bsp1407I TGTACA 1 cut(s) 104
Bsp143I GATC 3 cut(s) 15, 156, 188
Bsp1720I GCTNAGC 1 cut(s) 229
Bsp19I CCATGG 1 cut(s) 297
BspCNI CTCAG 2 cut(s) 192, 242
BspMAI CTGCAG 1 cut(s) 313
BspPI GGATC 1 cut(s) 196
BsrFI RCCGGY 1 cut(s) 242
BsrGI TGTACA 1 cut(s) 104
BsrI ACTGG 1 cut(s) 286
BssAI RCCGGY 1 cut(s) 242
BssECI CCNNGG 1 cut(s) 297
BssMI GATC 3 cut(s) 15, 156, 188
BssT1I CCWWGG 1 cut(s) 297
Bst6I CTCTTC 1 cut(s) 328
BstAUI TGTACA 1 cut(s) 104
BstDEI CTNAG 2 cut(s) 200, 229
BstDSI CCRYGG 1 cut(s) 297
BstKTI GATC 3 cut(s) 18, 159, 191
BstMBI GATC 3 cut(s) 15, 156, 188
BstMWI GCNNNNNNNGC 2 cut(s) 225, 239
BstSFI CTRYAG 1 cut(s) 309
BstV1I GCAGC 2 cut(s) 295, 317
BtgI CCRYGG 1 cut(s) 297
Cfr10I RCCGGY 1 cut(s) 242
Cfr13I GGNCC 1 cut(s) 284
Csp6I GTAC 3 cut(s) 105, 237, 272
CviAII CATG 2 cut(s) 160, 298
CviJI RGCY 6 cut(s) 83, 228, 233, 261, 308, 329
CviKI_1 RGCY 6 cut(s) 83, 228, 233, 261, 308, 329
CviQI GTAC 3 cut(s) 105, 237, 272
DdeI CTNAG 2 cut(s) 200, 229
DpnI GATC 3 cut(s) 17, 158, 190
DpnII GATC 3 cut(s) 15, 156, 188
DraIII CACNNNGTG 1 cut(s) 216
Eam1104I CTCTTC 1 cut(s) 328
EarI CTCTTC 1 cut(s) 328
Eco130I CCWWGG 1 cut(s) 297
Eco24I GRGCYC 1 cut(s) 263
Eco47I GGWCC 1 cut(s) 284
Eco57I CTGAAG 3 cut(s) 51, 99, 309
EcoT14I CCWWGG 1 cut(s) 297
EcoT38I GRGCYC 1 cut(s) 263
ErhI CCWWGG 1 cut(s) 297
FaeI CATG 2 cut(s) 163, 301
FaiI YATR 3 cut(s) 135, 161, 299
FaqI GGGAC 1 cut(s) 189
FatI CATG 2 cut(s) 159, 297
FbaI TGATCA 1 cut(s) 15
Fnu4HI GCNGC 2 cut(s) 306, 309
FriOI GRGCYC 1 cut(s) 263
Fsp4HI GCNGC 2 cut(s) 306, 309
FspBI CTAG 2 cut(s) 86, 349
GluI GCNGC 2 cut(s) 306, 309
HapII CCGG 1 cut(s) 243
Hin1II CATG 2 cut(s) 163, 301
HinfI GANTC 2 cut(s) 71, 202
HpaII CCGG 1 cut(s) 243
Hpy188I TCNGA 4 cut(s) 49, 70, 79, 201
Hpy188III TCNNGA 2 cut(s) 19, 86
HpyAV CCTTC 2 cut(s) 217, 249
HpyCH4V TGCA 3 cut(s) 128, 305, 311
HpyF10VI GCNNNNNNNGC 2 cut(s) 225, 239
HpyF3I CTNAG 2 cut(s) 200, 229
Hsp92II CATG 2 cut(s) 163, 301
Ksp22I TGATCA 1 cut(s) 15
Kzo9I GATC 3 cut(s) 15, 156, 188
LpnPI CCDG 5 cut(s) 82, 169, 219, 256, 267
Lsp1109I GCAGC 2 cut(s) 295, 317
MaeI CTAG 2 cut(s) 86, 349
MalI GATC 3 cut(s) 17, 158, 190
MboI GATC 3 cut(s) 15, 156, 188
MboII GAAGA 1 cut(s) 315
MhlI GDGCHC 3 cut(s) 36, 263, 318
MluCI AATT 4 cut(s) 26, 41, 139, 195
MlyI GAGTC 1 cut(s) 211
MnlI CCTC 2 cut(s) 85, 162
MroXI GAANNNNTTC 1 cut(s) 26
MspA1I CMGCKG 2 cut(s) 233, 308
MspI CCGG 1 cut(s) 243
MwoI GCNNNNNNNGC 2 cut(s) 225, 239
NcoI CCATGG 1 cut(s) 297
NdeII GATC 3 cut(s) 15, 156, 188
NlaIII CATG 2 cut(s) 163, 301
PdmI GAANNNNTTC 1 cut(s) 26
PfeI GAWTC 1 cut(s) 71
PkrI GCNGC 2 cut(s) 307, 310
PleI GAGTC 1 cut(s) 210
PpsI GAGTC 1 cut(s) 210
PspPI GGNCC 1 cut(s) 284
PstI CTGCAG 1 cut(s) 313
PvuII CAGCTG 2 cut(s) 233, 308
RsaI GTAC 3 cut(s) 106, 238, 273
RsaNI GTAC 3 cut(s) 105, 237, 272
SatI GCNGC 2 cut(s) 306, 309
Sau3AI GATC 3 cut(s) 15, 156, 188
Sau96I GGNCC 1 cut(s) 284
SchI GAGTC 1 cut(s) 211
SduI GDGCHC 3 cut(s) 36, 263, 318
SetI ASST 3 cut(s) 85, 235, 310
SfcI CTRYAG 1 cut(s) 309
SinI GGWCC 1 cut(s) 284
Sse9I AATT 4 cut(s) 26, 41, 139, 195
SspMI CTAG 2 cut(s) 86, 349
StyI CCWWGG 1 cut(s) 297
TaqI TCGA 1 cut(s) 30
TasI AATT 4 cut(s) 26, 41, 139, 195
TatI WGTACW 1 cut(s) 104
TfiI GAWTC 1 cut(s) 71
TseI GCWGC 2 cut(s) 305, 308
TspGWI ACGGA 1 cut(s) 289
VpaK11BI GGWCC 1 cut(s) 284
XapI RAATTY 1 cut(s) 41
XbaI TCTAGA 1 cut(s) 85
XmnI GAANNNNTTC 1 cut(s) 26
XspI CTAG 2 cut(s) 86, 349
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.