Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0013378

Physical Location & Seq

Genomic Coordinates Forward (+)

65492169 .. 65497150

Gene Structure 4982 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ41252

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3534 bp

ATGGACACATTCTCTATCCTCTCCTCACCCTCTCACACCTTCTTCACGCGCCTCCTCTCTCTCAAACCCTCACCTCCTCATCCCTTACTTCACCACCTCACCCAAACCCTAGCCTTCTCTTCCCCCAAATTTCCACACACTCAAAATCTACTCCGATTCCGAGTCACTGTCCAGTCCCCAAGCTCCGCCTTCCCCGCCAAATCTCAACTCTCCGACGCCGACGACGATGAGGAGGAAGACGAGTTCGAAGAGGACGACGACGAAGACGTCGCGGCCGATGAATACGATGACATTTCCGGCGATATGTCGGACGGGCTCGAACAAAGCGACGATGAAATTGAGATGGAGGACTCCATGGCCGGTGCAGAGCCGCCGGCGATTCGCGACGAGGAGTTCCGGTGGAAGAGAGTGGAGAAGCTCTGCGAAGATGTGAAACTGTTCGGCGAGGAAATGATTGACGACGGCGCTCTCGCCTCAATCTACGATTTCCGAATCGATAAATTTCAGAGATTAGCTATACAAGCATTCTTGAGAGGTTCATCAGTAGTTGTGTCTGCGCCGACGAGTAGCGGAAAGACTTTGATAGCAGAAGCTGCTGCTGTAGCAACCGTAGCCAAGGGAAGAAGATTGTTCTACACAACTCCGCTTAAGGCCTTATCGAATCAGAAGTTTCGCGAATTTCGTGAAACTTTCGGTGAAAATAATGTTGGTCTTCTCACGGGAGATTCGGCAGTAAACAAAGATGCTCAGGTTTTGATTATGACCACAGAGATTTTGCGCAACATGTTGTATCAGAGCGTTGGAATGTCTTCTGCTCGGGACTCACTTTTTCACGTGGATGTAATAGTCTTGGATGAAGTTCATTATTTAAGTGACATATCTCGGGGTACAGTGTGGGAAGAAATTGTTATTTATTCCCCAAAAGTGGTTCAACTCATATGTTTGTCCGCAACAGTTGCTAATCCAGATGAATTGGCTGGTTGGATTGGTCAGATTCATGGTAAAACTGAATTGGTAACTTCAACAAAGCGTCCAGTACCACTGACTTGGCATTTCTCGACAAAGACTTCTTTATTACCACTTCTTGATAAGACAGGAAAACACATGAATAGGAGGTTGTCAGTCAATTATCTGCAACTTAGTGCTGCTGCAACAAAATCTAATAAAGATGATGGATCTAGAAGGAGGAGTTCAAGAAGACGGGCTAGTGAGACGAGCTATGATGACAGTACTGGTAACATGTCTAGACGACCACTTTCAAAGAATGACATCAACTTAATATACCGTTCACAAGTGCCTCAAGTTACTGATACATTATGGCACCTTAAGGCTAGGGATATGCTACCAGCAGTATGGTTTATTTTTAGCAGGAAAGGTTGTGATGCTGCTGTTCAGTACATTCAAGATTGCAAACTTCTAGATGACTGTGAAGCAAGTGAGGTTGAATTAGCGTTGAAGAGGTTCCGCATTAAGTATCCGGATGCTATCAGGGAGAGTGCAGTGAAGGGGTTACTGCGAGGGGTTGCTGCCCATCATGCTGGCTGTCTACCTTTATGGAAATCATTCATAGAAGAGCTGTTTCAGCGTGGTCTTGTTAAGGTTGTATTTGCTACAGAAACACTTGCTGCTGGAATCAATATGCCTGCTAGGACAGCCATTATTGCATCCCTCAGCAAAAGGAGTGACAGTGGACGTACCCTATTGAGCTCAAATGAACTACTTCAAATGGCTGGCCGTGCTGGACGTAGAGGCACAGATGAAAGGGGTCATGTAGTGCTTATTCAAAATCCTTACGAGGGTGCTGAAGCTGGTTGCAAGGTTCTTTTTGCTGGACTTGAACCTCTGGTATCACAGTTTACTGCTTCATATGGAATGGTGCTAAATCTTCTTGCCGGTTCAAAAGTCACTCGTAGATCCAGTGAATCAGATGATACAAAAGCCTCCCAACCTGGGCGAACTTTGGACGAAGCTAGAAAGCTAGTTGAGCAAAGTTTTGGAAACTATGTTGGCAGCAATGTTATGGTTGCTGCAAAAGAGGAGCTTGCTAGAATTGAGAAAGAAATAGAGATGCTGACTTTGGAAATTAGCGATGATGCCATCGACAGAAAAAGCAGGAAGCTCTTGTCTGGACCAGCATACAAGGAGATTGCTGATCTACAGGAAGAATTAAGGGCAGAGAAACGCCTAAGGACTGAACTTCGGAAAAGAATGGAATCTCAGAAGCTTTCTTCACTACGACCCTTATTAAAGGAGTGTGAAAATGGGCACTTGCCCTTTTTGTGCTTGCAGTATAAAGATTCAGAAGGAGTTCAACACTCCATCCCGACTGTTTATTTGGGGAAGGTTGAGTTGCTGAGTTGCTCAAAGCTTAAGAACATGGTTTCTGTGGACGATTCTTTTGCACTAAATGCAGTAGCAGCAGAGTCTGAACCAACTTCAGTTTTTGAACCATCATATTATGCGGCTCTTGGCTCTGACAATTCTTGGTACCTATTTACAGAAAAGTGGATCAAAACAATTTATAAGACAGGCTTTCCAAATGTTGCTTTAGCTCAAGGAGATGCTTTGCCTCGGGAAATAATGAGCACGCTTCTTGATAAGACGGAAATGAAGTGGGAGAAGCTTGCGGAGTCTGATCTTGGTGGTTTTTGGGGCATGGAAGGATCTCTTGAGACATGGTCTTGGAGTTTGAATGTTCCAGTCTTGAATAGTCTTTCTGAACATGATGAGCTTTTACTCAAGTCAGAAGCATATAATCATGCTATAGGGTGTTATAAAGAACAAAGAAGTAAAGTTTCACGTCTGAAGAAAAAGATATCGCGTACACAAGGCTTCAGAGAATACAAGAAGATCATTGACATGGCCAACTATACAGAGGAGAAGATCAAGCGCTTGAAGGGTAGATCAAGACGTTTGACCAATCGAATAGAGCAGATTGAACCATCTGGTTGGAAAGAGTTCTTGCAGATCAGCAATGTTATACATGAAACTCGGGCATTAGATATTAACACTCATACCATATTTCCACTTGGTGAAACTGCAGCCTCTATTCGAGGAGAAAATGAACTGTGGCTTGCCATGGTTCTTCGAAATAAGATCTTACTAAGTTTAAAGCCTACAGAACTTGCTGCTGTGTGCGCCAGTTTAGTATCTGAAGGGATCAAAATTCGTCCGTGGAAAAATAACAGCTACATATACGAACCTTCAAGTACAGTAATTGACGTGGTGAGCTTCTTGGATGAGCAAAGAAGCACTTTTTTACAGCTTCAGGAAAAGCATGGGGTAAATAAGCCTTGCTATTTGGATACCCAGTTTGCAGGTATGGTTGAAGCCTGGGTTTCTGGGTTGACTTGGAGGGAAATCATGATGGATTGTGCAATGGACGAGGGAGATTTAGCCCGCCTTCTACGGCGAACTATAGATCTGCTGGTGCAAATCCCCAAATTGCCTGATATTGACCCCGTCTTGCAGAGCAACGCAAAGACGGCGTCAAATATCATGGACCGCCCTCCGATAAGTGAGTTAGCTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000373 GO:0000375 GO:0000377 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006810 GO:0007275 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009790 GO:0009791 GO:0009793 GO:0009892 GO:0009987 GO:0010154 GO:0010467 GO:0010468 GO:0010494 GO:0010496 GO:0010497 GO:0010501 GO:0010605 GO:0010608 GO:0010629 GO:0016070 GO:0016071 GO:0016441 GO:0016458 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0022414 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0035770 GO:0036464 GO:0040029 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048316 GO:0048519 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0051179 GO:0051234 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD DSHCT Helicase_C

Protein Analysis

1177

Amino Acids

132.09

Weight (kDa)

5.75

Isoelectric Point (pI)

51.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	167 - 323	2.5e-27	DEAD/DEAH box helicase
ResIII	PF04851	169 - 319	4.6e-10	Type III restriction enzyme, res subunit
DEXQc_Suv3	PF22527	185 - 304	1.6e-07	DEXQ-box helicase domain of Suv3
SH3_ISE2	PF25446	741 - 919	1.7e-86	ISE2, SH3 domain
DSHCT	PF08148	1006 - 1172	3.2e-34	DSHCT (NUC185) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013378)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70070
fragaria_vesca	FvH4_4g35290 FvH4_4g35290 FvH4_4g35290
malus_domestica	MD16G1083800.v1.1
prunus_persica	Prupe.1G262200_v2.0.a1
pyrus_communis	pycom16g07280
rosa_chinensis	RchiOBHm_Chr4g0444891
rosa_laevigata	RLG00000005791
rosa_multiflora	Rmu_sc0006845.1_g000003 Rmu_sc0013783.1_g000003
rosa_roxburghii	Rroxscaffold_5G00385390
rosa_rugosa	Rorug04G0355800
rosa_samantha	Rh4AG417600 Rh4BG429400 Rh4CG444100 Rh4DG425300
rosa_wichuraiana	Rw4G035790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	2523, 2775
AasI	GACNNNNNNGTC	1 cut(s)	266
AatII	GACGTC	1 cut(s)	270
Acc16I	TGCGCA	1 cut(s)	779
Acc36I	ACCTGC	1 cut(s)	3308
Acc65I	GGTACC	1 cut(s)	2487
AccB1I	GGYRCC	2 cut(s)	1320, 2487
AccI	GTMKAC	1 cut(s)	1546
AccII	CGCG	5 cut(s)	49, 272, 384, 675, 2821
AccIII	TCCGGA	1 cut(s)	1477
AclWI	GGATC	5 cut(s)	1183, 1908, 2516, 2671, 3167
AcoI	YGGCCR	4 cut(s)	273, 357, 1732, 2862
AcsI	RAATTY	4 cut(s)	128, 500, 677, 3165
AcuI	CTGAAG	6 cut(s)	1824, 2421, 2818, 2825, 3174, 3251
AcvI	CACGTG	1 cut(s)	835
AcyI	GRCGYC	3 cut(s)	216, 267, 3488
AdeI	CACNNNGTG	1 cut(s)	3032
AfaI	GTAC	8 cut(s)	889, 1038, 1231, 1397, 1696, 2489, 2824, 3211
AfeI	AGCGCT	1 cut(s)	2891
AfiI	CCNNNNNNNGG	3 cut(s)	925, 1796, 1950
AflII	CTTAAG	3 cut(s)	647, 1325, 2369
AflIII	ACRYGT	2 cut(s)	783, 1239
AjiI	CACGTC	2 cut(s)	2801, 3223
AjnI	CCWGG	2 cut(s)	1948, 3332
AjuI	GAANNNNNNNTTGG	2 cut(s)	690, 722
AloI	GAACNNNNNNTCC	2 cut(s)	227, 259
Alw21I	GWGCWC	2 cut(s)	1709, 2588
Alw26I	GTCTC	2 cut(s)	1205, 2666
AlwI	GGATC	5 cut(s)	1183, 1908, 2516, 2671, 3167
AlwNI	CAGNNNCTG	2 cut(s)	593, 2426
Ama87I	CYCGRG	4 cut(s)	816, 882, 2571, 2991
Aor13HI	TCCGGA	1 cut(s)	1477
Aor51HI	AGCGCT	1 cut(s)	2891
AoxI	GGCC	5 cut(s)	273, 357, 651, 1732, 2862
ApoI	RAATTY	4 cut(s)	128, 500, 677, 3165
ArsI	GACNNNNNNTTYG	6 cut(s)	2317, 2349, 2381, 2413, 3473, 3505
Asp700I	GAANNNNTTC	7 cut(s)	437, 808, 1460, 1562, 1719, 2307, 2957
Asp718I	GGTACC	1 cut(s)	2487
AspLEI	GCGC	6 cut(s)	51, 467, 559, 780, 2892, 3140
AspS9I	GGNCC	2 cut(s)	2129, 3502
AsuHPI	GGTGA	7 cut(s)	18, 63, 83, 91, 707, 3044, 3238
AsuII	TTCGAA	2 cut(s)	246, 3088
AvaI	CYCGRG	4 cut(s)	816, 882, 2571, 2991
AvaII	GGWCC	2 cut(s)	2129, 3502
AxyI	CCTNAGG	1 cut(s)	2186
BaeGI	GKGCMC	1 cut(s)	2268
BalI	TGGCCA	1 cut(s)	2864
BanI	GGYRCC	2 cut(s)	1320, 2487
BanII	GRGCYC	2 cut(s)	318, 1709
BbrPI	CACGTG	1 cut(s)	835
BbsI	GAAGAC	5 cut(s)	243, 270, 704, 801, 1204
Bbv12I	GWGCWC	2 cut(s)	1709, 2588
BbvCI	CCTCAGC	1 cut(s)	1670
BccI	CCATC	8 cut(s)	337, 1166, 1539, 2105, 2327, 2458, 2950, 3361
BceAI	ACGGC	4 cut(s)	478, 1719, 3425, 3501
BcgI	CGANNNNNNTGC	2 cut(s)	2381, 2415
BciT130I	CCWGG	2 cut(s)	1950, 3334
BciVI	GTATCC	2 cut(s)	1485, 3298
BcoDI	GTCTC	2 cut(s)	1205, 2666
BfmI	CTRYAG	7 cut(s)	600, 1611, 2156, 2763, 3039, 3117, 3417
BfoI	RGCGCY	2 cut(s)	468, 2893
BfrI	CTTAAG	3 cut(s)	647, 1325, 2369
BfuAI	ACCTGC	1 cut(s)	3308
BfuI	GTATCC	2 cut(s)	1485, 3298
BglII	AGATCT	2 cut(s)	3096, 3421
BmcAI	AGTACT	1 cut(s)	1231
Bme1390I	CCNGG	2 cut(s)	1950, 3334
Bme18I	GGWCC	2 cut(s)	2129, 3502
BmeT110I	CYCGRG	4 cut(s)	816, 882, 2571, 2991
BmgBI	CACGTC	2 cut(s)	2801, 3223
BmgT120I	GGNCC	2 cut(s)	2129, 3502
BmiI	GGNNCC	3 cut(s)	1322, 1463, 2489
BmrFI	CCNGG	2 cut(s)	1950, 3334
BmrI	ACTGGG	1 cut(s)	3304
BmsI	GCATC	7 cut(s)	733, 1372, 1471, 1673, 2058, 2083, 2551
BmuI	ACTGGG	1 cut(s)	3304
BpiI	GAAGAC	5 cut(s)	243, 270, 704, 801, 1204
Bpu10I	CCTNAGC	2 cut(s)	747, 1670
Bpu14I	TTCGAA	2 cut(s)	246, 3088
BpuEI	CTTGAG	5 cut(s)	550, 1284, 2538, 2690, 2723
Bsa29I	ATCGAT	1 cut(s)	495
BsaAI	YACGTR	1 cut(s)	835
BsaHI	GRCGYC	3 cut(s)	216, 267, 3488
BsaJI	CCNNGG	7 cut(s)	354, 615, 1949, 2570, 3078, 3173, 3333
BsaWI	WCCGGW	2 cut(s)	396, 1477
BsaXI	ACNNNNNCTCC	4 cut(s)	383, 413, 1672, 1702
Bsc4I	CCNNNNNNNGG	3 cut(s)	925, 1796, 1950
Bse118I	RCCGGY	3 cut(s)	359, 373, 1892
Bse1I	ACTGG	7 cut(s)	172, 1034, 1237, 1917, 2699, 3141, 3310
Bse21I	CCTNAGG	1 cut(s)	2186
Bse3DI	GCAATG	3 cut(s)	2020, 2980, 3384
BseAI	TCCGGA	1 cut(s)	1477
BseBI	CCWGG	2 cut(s)	1950, 3334
BseCI	ATCGAT	1 cut(s)	495
BseDI	CCNNGG	7 cut(s)	354, 615, 1949, 2570, 3078, 3173, 3333
BseGI	GGATG	7 cut(s)	79, 844, 859, 1486, 1664, 2319, 3244
BseLI	CCNNNNNNNGG	3 cut(s)	925, 1796, 1950
BseMI	GCAATG	3 cut(s)	2020, 2980, 3384
BseMII	CTCAG	4 cut(s)	761, 1684, 2231, 2345
BseNI	ACTGG	7 cut(s)	172, 1034, 1237, 1917, 2699, 3141, 3310
BseRI	GAGGAG	9 cut(s)	13, 44, 66, 245, 404, 1201, 2051, 2891, 3069
BseSI	GKGCMC	1 cut(s)	2268
BseX3I	CGGCCG	1 cut(s)	273
BsgI	GTGCAG	2 cut(s)	384, 1518
Bsh1236I	CGCG	5 cut(s)	49, 272, 384, 675, 2821
Bsh1285I	CGRYCG	1 cut(s)	276
BshFI	GGCC	5 cut(s)	275, 359, 653, 1734, 2864
BshNI	GGYRCC	2 cut(s)	1320, 2487
BshVI	ATCGAT	1 cut(s)	495
BsiEI	CGRYCG	1 cut(s)	276
BsiHKAI	GWGCWC	2 cut(s)	1709, 2588
BsiHKCI	CYCGRG	4 cut(s)	816, 882, 2571, 2991
BsiSI	CCGG	6 cut(s)	297, 360, 374, 397, 1478, 1893
BslFI	GGGAC	2 cut(s)	160, 833
BslI	CCNNNNNNNGG	3 cut(s)	925, 1796, 1950
BsmAI	GTCTC	2 cut(s)	1205, 2666
BsmBI	CGTCTC	1 cut(s)	1205
BsmFI	GGGAC	2 cut(s)	160, 833
BsmI	GAATGC	1 cut(s)	524
BsnI	GGCC	5 cut(s)	275, 359, 653, 1734, 2864
BsoBI	CYCGRG	4 cut(s)	816, 882, 2571, 2991
Bsp119I	TTCGAA	2 cut(s)	246, 3088
Bsp1286I	GDGCHC	4 cut(s)	318, 1709, 2268, 2588
Bsp13I	TCCGGA	1 cut(s)	1477
Bsp19I	CCATGG	2 cut(s)	354, 3078
Bsp68I	TCGCGA	2 cut(s)	384, 675
BspANI	GGCC	5 cut(s)	275, 359, 653, 1734, 2864
BspCNI	CTCAG	4 cut(s)	760, 1683, 2230, 2346
BspDI	ATCGAT	1 cut(s)	495
BspEI	TCCGGA	1 cut(s)	1477
BspFNI	CGCG	5 cut(s)	49, 272, 384, 675, 2821
BspHI	TCATGA	1 cut(s)	3363
BspLI	GGNNCC	3 cut(s)	1322, 1463, 2489
BspMAI	CTGCAG	1 cut(s)	3043
BspMI	ACCTGC	1 cut(s)	3308
BspPI	GGATC	5 cut(s)	1183, 1908, 2516, 2671, 3167
BspQI	GCTCTTC	1 cut(s)	1566
BspT104I	TTCGAA	2 cut(s)	246, 3088
BspT107I	GGYRCC	2 cut(s)	1320, 2487
BspTI	CTTAAG	3 cut(s)	647, 1325, 2369
BsrDI	GCAATG	3 cut(s)	2020, 2980, 3384
BsrFI	RCCGGY	3 cut(s)	359, 373, 1892
BsrI	ACTGG	7 cut(s)	172, 1034, 1237, 1917, 2699, 3141, 3310
BssAI	RCCGGY	3 cut(s)	359, 373, 1892
BssECI	CCNNGG	7 cut(s)	354, 615, 1949, 2570, 3078, 3173, 3333
BssNI	GRCGYC	3 cut(s)	216, 267, 3488
BssT1I	CCWWGG	3 cut(s)	354, 615, 3078
Bst2UI	CCWGG	2 cut(s)	1950, 3334
Bst6I	CTCTTC	5 cut(s)	124, 243, 398, 1451, 1566
BstACI	GRCGYC	3 cut(s)	216, 267, 3488
BstAFI	CTTAAG	3 cut(s)	647, 1325, 2369
BstAPI	GCANNNNNTGC	3 cut(s)	593, 956, 2408
BstBAI	YACGTR	1 cut(s)	835
BstBI	TTCGAA	2 cut(s)	246, 3088
BstDEI	CTNAG	7 cut(s)	747, 1139, 1670, 2186, 2217, 2354, 3104
BstDSI	CCRYGG	3 cut(s)	354, 3078, 3173
BstF5I	GGATG	7 cut(s)	79, 844, 859, 1486, 1664, 2319, 3244
BstFNI	CGCG	5 cut(s)	49, 272, 384, 675, 2821
BstH2I	RGCGCY	2 cut(s)	468, 2893
BstHHI	GCGC	6 cut(s)	51, 467, 559, 780, 2892, 3140
BstMAI	GTCTC	2 cut(s)	1205, 2666
BstMCI	CGRYCG	1 cut(s)	276
BstNI	CCWGG	2 cut(s)	1950, 3334
BstNSI	RCATGY	2 cut(s)	787, 1243
BstSCI	CCNGG	2 cut(s)	1948, 3332
BstSFI	CTRYAG	7 cut(s)	600, 1611, 2156, 2763, 3039, 3117, 3417
BstSLI	GKGCMC	1 cut(s)	2268
BstUI	CGCG	5 cut(s)	49, 272, 384, 675, 2821
BstV2I	GAAGAC	5 cut(s)	243, 270, 704, 801, 1204
BstX2I	RGATCY	5 cut(s)	1175, 1913, 2663, 3096, 3421
BstXI	CCANNNNNNTGG	4 cut(s)	1047, 1353, 1538, 2949
BstYI	RGATCY	5 cut(s)	1175, 1913, 2663, 3096, 3421
BstZI	CGGCCG	1 cut(s)	273
Bsu15I	ATCGAT	1 cut(s)	495
Bsu36I	CCTNAGG	1 cut(s)	2186
BsuI	GTATCC	2 cut(s)	1485, 3298
BsuRI	GGCC	5 cut(s)	275, 359, 653, 1734, 2864
BsuTUI	ATCGAT	1 cut(s)	495
BtgI	CCRYGG	3 cut(s)	354, 3078, 3173
BtgZI	GCGATG	1 cut(s)	2103
BtrI	CACGTC	2 cut(s)	2801, 3223
BtsCI	GGATG	7 cut(s)	79, 844, 859, 1486, 1664, 2319, 3244
BtsI	GCAGTG	1 cut(s)	1506
BtsIMutI	CAGTG	6 cut(s)	165, 897, 1040, 1506, 1693, 1924
BtuMI	TCGCGA	2 cut(s)	384, 675
BveI	ACCTGC	1 cut(s)	3308
CaiI	CAGNNNCTG	2 cut(s)	593, 2426
CciI	TCATGA	1 cut(s)	3363
CfoI	GCGC	6 cut(s)	51, 467, 559, 780, 2892, 3140
Cfr10I	RCCGGY	3 cut(s)	359, 373, 1892
Cfr13I	GGNCC	2 cut(s)	2129, 3502
ClaI	ATCGAT	1 cut(s)	495
CseI	GACGC	3 cut(s)	224, 1019, 3477
Csp6I	GTAC	8 cut(s)	888, 1037, 1230, 1396, 1695, 2488, 2823, 3210
CviQI	GTAC	8 cut(s)	888, 1037, 1230, 1396, 1695, 2488, 2823, 3210
DdeI	CTNAG	7 cut(s)	747, 1139, 1670, 2186, 2217, 2354, 3104
DraI	TTTAAA	1 cut(s)	3111
DraIII	CACNNNGTG	1 cut(s)	3032
DrdI	GACNNNNNNGTC	1 cut(s)	266
DseDI	GACNNNNNNGTC	1 cut(s)	266
EaeI	YGGCCR	4 cut(s)	273, 357, 1732, 2862
EagI	CGGCCG	1 cut(s)	273
Eam1104I	CTCTTC	5 cut(s)	124, 243, 398, 1451, 1566
EarI	CTCTTC	5 cut(s)	124, 243, 398, 1451, 1566
EciI	GGCGGA	1 cut(s)	175
Ecl136II	GAGCTC	1 cut(s)	1707
EclXI	CGGCCG	1 cut(s)	273
Eco130I	CCWWGG	3 cut(s)	354, 615, 3078
Eco147I	AGGCCT	1 cut(s)	653
Eco24I	GRGCYC	2 cut(s)	318, 1709
Eco32I	GATATC	1 cut(s)	2817
Eco47I	GGWCC	2 cut(s)	2129, 3502
Eco47III	AGCGCT	1 cut(s)	2891
Eco52I	CGGCCG	1 cut(s)	273
Eco53kI	GAGCTC	1 cut(s)	1707
Eco57I	CTGAAG	6 cut(s)	1824, 2421, 2818, 2825, 3174, 3251
Eco72I	CACGTG	1 cut(s)	835
Eco81I	CCTNAGG	1 cut(s)	2186
Eco88I	CYCGRG	4 cut(s)	816, 882, 2571, 2991
EcoICRI	GAGCTC	1 cut(s)	1707
EcoRII	CCWGG	2 cut(s)	1948, 3332
EcoRV	GATATC	1 cut(s)	2817
EcoT14I	CCWWGG	3 cut(s)	354, 615, 3078
EcoT38I	GRGCYC	2 cut(s)	318, 1709
ErhI	CCWWGG	3 cut(s)	354, 615, 3078
Esp3I	CGTCTC	1 cut(s)	1205
FalI	AAGNNNNNCTT	8 cut(s)	2025, 2057, 2516, 2548, 2652, 2684, 3238, 3270
FaqI	GGGAC	2 cut(s)	160, 833
FauI	CCCGC	2 cut(s)	202, 3407
FauNDI	CATATG	2 cut(s)	938, 1867
FblI	GTMKAC	1 cut(s)	1546
FokI	GGATG	7 cut(s)	66, 851, 866, 1493, 1651, 2306, 3251
FriOI	GRGCYC	2 cut(s)	318, 1709
FspI	TGCGCA	1 cut(s)	779
GlaI	GCGC	6 cut(s)	50, 466, 558, 779, 2891, 3139
HaeII	RGCGCY	2 cut(s)	468, 2893
HaeIII	GGCC	5 cut(s)	275, 359, 653, 1734, 2864
HapII	CCGG	6 cut(s)	297, 360, 374, 397, 1478, 1893
HgaI	GACGC	3 cut(s)	224, 1019, 3477
HhaI	GCGC	6 cut(s)	51, 467, 559, 780, 2892, 3140
Hin1I	GRCGYC	3 cut(s)	216, 267, 3488
Hin6I	GCGC	6 cut(s)	49, 465, 557, 778, 2890, 3138
HinP1I	GCGC	6 cut(s)	49, 465, 557, 778, 2890, 3138
HincII	GTYRAC	1 cut(s)	3348
HindII	GTYRAC	1 cut(s)	3348
HindIII	AAGCTT	3 cut(s)	2222, 2366, 2621
HpaII	CCGG	6 cut(s)	297, 360, 374, 397, 1478, 1893
HphI	GGTGA	7 cut(s)	18, 63, 83, 91, 707, 3044, 3238
Hpy166II	GTNNAC	8 cut(s)	736, 1289, 1547, 1691, 1857, 2389, 2825, 3348
Hpy8I	GTNNAC	8 cut(s)	736, 1289, 1547, 1691, 1857, 2389, 2825, 3348
HpyCH4IV	ACGT	7 cut(s)	267, 834, 1693, 1744, 2800, 2911, 3222
HpyF3I	CTNAG	7 cut(s)	747, 1139, 1670, 2186, 2217, 2354, 3104
HpySE526I	ACGT	7 cut(s)	267, 834, 1693, 1744, 2800, 2911, 3222
Hsp92I	GRCGYC	3 cut(s)	216, 267, 3488
HspAI	GCGC	6 cut(s)	49, 465, 557, 778, 2890, 3138
Kpn2I	TCCGGA	1 cut(s)	1477
KpnI	GGTACC	1 cut(s)	2491
KroI	GCCGGC	1 cut(s)	373
KroNI	GCCGGC	1 cut(s)	375
LguI	GCTCTTC	1 cut(s)	1566
LmnI	GCTCC	2 cut(s)	188, 2038
LweI	GCATC	7 cut(s)	733, 1372, 1471, 1673, 2058, 2083, 2551
MaeII	ACGT	7 cut(s)	267, 834, 1693, 1744, 2800, 2911, 3222
MaeIII	GTNAC	8 cut(s)	163, 872, 1015, 1235, 1303, 1509, 1682, 1903
MflI	RGATCY	5 cut(s)	1175, 1913, 2663, 3096, 3421
MhlI	GDGCHC	4 cut(s)	318, 1709, 2268, 2588
MlsI	TGGCCA	1 cut(s)	2864
MluNI	TGGCCA	1 cut(s)	2864
MlyI	GAGTC	5 cut(s)	171, 344, 815, 2432, 2639
MmeI	TCCRAC	5 cut(s)	237, 288, 781, 962, 2930
Mox20I	TGGCCA	1 cut(s)	2864
MreI	CGCCGGCG	1 cut(s)	373
MroI	TCCGGA	1 cut(s)	1477
MroNI	GCCGGC	1 cut(s)	373
MroXI	GAANNNNTTC	7 cut(s)	437, 808, 1460, 1562, 1719, 2307, 2957
MscI	TGGCCA	1 cut(s)	2864
MslI	CAYNNNNRTG	2 cut(s)	837, 2858
Msp20I	TGGCCA	1 cut(s)	2864
MspCI	CTTAAG	3 cut(s)	647, 1325, 2369
MspI	CCGG	6 cut(s)	297, 360, 374, 397, 1478, 1893
MspR9I	CCNGG	2 cut(s)	1950, 3334
Mva1269I	GAATGC	1 cut(s)	524
MvaI	CCWGG	2 cut(s)	1950, 3334
MvnI	CGCG	5 cut(s)	49, 272, 384, 675, 2821
NaeI	GCCGGC	1 cut(s)	375
NcoI	CCATGG	2 cut(s)	354, 3078
NdeI	CATATG	2 cut(s)	938, 1867
NgoMIV	GCCGGC	1 cut(s)	373
NlaIV	GGNNCC	3 cut(s)	1322, 1463, 2489
NmuCI	GTSAC	4 cut(s)	163, 872, 1682, 1903
NruI	TCGCGA	2 cut(s)	384, 675
NsbI	TGCGCA	1 cut(s)	779
NspI	RCATGY	2 cut(s)	787, 1243
NspV	TTCGAA	2 cut(s)	246, 3088
PagI	TCATGA	1 cut(s)	3363
PceI	AGGCCT	1 cut(s)	653
PciI	ACATGT	2 cut(s)	783, 1239
PciSI	GCTCTTC	1 cut(s)	1566
PcsI	WCGNNNNNNNCGW	6 cut(s)	222, 252, 264, 273, 324, 679
PctI	GAATGC	1 cut(s)	524
PdiI	GCCGGC	1 cut(s)	375
PdmI	GAANNNNTTC	7 cut(s)	437, 808, 1460, 1562, 1719, 2307, 2957
PflFI	GACNNNGTC	3 cut(s)	2677, 3461, 3487
PleI	GAGTC	5 cut(s)	170, 344, 815, 2431, 2638
PmaCI	CACGTG	1 cut(s)	835
PmlI	CACGTG	1 cut(s)	835
PpsI	GAGTC	5 cut(s)	170, 344, 815, 2431, 2638
Ppu21I	YACGTR	1 cut(s)	835
PscI	ACATGT	2 cut(s)	783, 1239
PsiI	TTATAA	2 cut(s)	2523, 2775
Psp124BI	GAGCTC	1 cut(s)	1709
Psp6I	CCWGG	2 cut(s)	1948, 3332
PspCI	CACGTG	1 cut(s)	835
PspGI	CCWGG	2 cut(s)	1948, 3332
PspN4I	GGNNCC	3 cut(s)	1322, 1463, 2489
PspPI	GGNCC	2 cut(s)	2129, 3502
PstI	CTGCAG	1 cut(s)	3043
PstNI	CAGNNNCTG	2 cut(s)	593, 2426
PsuI	RGATCY	5 cut(s)	1175, 1913, 2663, 3096, 3421
PsyI	GACNNNGTC	3 cut(s)	2677, 3461, 3487
RruI	TCGCGA	2 cut(s)	384, 675
RsaI	GTAC	8 cut(s)	889, 1038, 1231, 1397, 1696, 2489, 2824, 3211
RsaNI	GTAC	8 cut(s)	888, 1037, 1230, 1396, 1695, 2488, 2823, 3210
RseI	CAYNNNNRTG	2 cut(s)	837, 2858
SacI	GAGCTC	1 cut(s)	1709
SapI	GCTCTTC	1 cut(s)	1566
Sau96I	GGNCC	2 cut(s)	2129, 3502
ScaI	AGTACT	1 cut(s)	1231
SchI	GAGTC	5 cut(s)	171, 344, 815, 2432, 2639
ScrFI	CCNGG	2 cut(s)	1950, 3334
SduI	GDGCHC	4 cut(s)	318, 1709, 2268, 2588
SfaNI	GCATC	7 cut(s)	733, 1372, 1471, 1673, 2058, 2083, 2551
SfcI	CTRYAG	7 cut(s)	600, 1611, 2156, 2763, 3039, 3117, 3417
SfuI	TTCGAA	2 cut(s)	246, 3088
SgrAI	CRCCGGYG	1 cut(s)	373
SinI	GGWCC	2 cut(s)	2129, 3502
SmiMI	CAYNNNNRTG	2 cut(s)	837, 2858
SmlI	CTYRAG	8 cut(s)	529, 647, 1299, 1325, 2369, 2553, 2669, 2738
SmoI	CTYRAG	8 cut(s)	529, 647, 1299, 1325, 2369, 2553, 2669, 2738
SseBI	AGGCCT	1 cut(s)	653
SstI	GAGCTC	1 cut(s)	1709
StuI	AGGCCT	1 cut(s)	653
StyD4I	CCNGG	2 cut(s)	1948, 3332
StyI	CCWWGG	3 cut(s)	354, 615, 3078
TaiI	ACGT	7 cut(s)	270, 837, 1696, 1747, 2803, 2914, 3225
TaqI	TCGA	9 cut(s)	246, 318, 495, 659, 1058, 2100, 2923, 3052, 3088
TatI	WGTACW	3 cut(s)	1229, 1395, 3209
TauI	GCSGC	3 cut(s)	275, 373, 2465
TscAI	CASTG	6 cut(s)	172, 897, 1047, 1506, 1693, 1924
TseFI	GTSAC	4 cut(s)	163, 872, 1682, 1903
Tsp45I	GTSAC	4 cut(s)	163, 872, 1682, 1903
TspGWI	ACGGA	2 cut(s)	2618, 3162
TspRI	CASTG	6 cut(s)	172, 897, 1047, 1506, 1693, 1924
Tth111I	GACNNNGTC	3 cut(s)	2677, 3461, 3487
Vha464I	CTTAAG	3 cut(s)	647, 1325, 2369
VpaK11BI	GGWCC	2 cut(s)	2129, 3502
XapI	RAATTY	4 cut(s)	128, 500, 677, 3165
XbaI	TCTAGA	3 cut(s)	1178, 1244, 1417
XceI	RCATGY	2 cut(s)	787, 1243
XmiI	GTMKAC	1 cut(s)	1546
XmnI	GAANNNNTTC	7 cut(s)	437, 808, 1460, 1562, 1719, 2307, 2957
ZraI	GACGTC	1 cut(s)	268
ZrmI	AGTACT	1 cut(s)	1231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.