Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0013378

Physical Location & Seq

Genomic Coordinates Forward (+)

63137942 .. 63142937

Gene Structure 4996 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG425300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2646 bp

ATGTTTGAAATATTTCAGGTTATTTATTCCCCAAAAGTGGTTCAACTCATATGTTTGTCCGCAACAGTTGCTAATCCAGATGAATTGGCTGGTTGGATTGGTCAGATTCATGGTAAAACTGAATTGGTAACTTCAACAAAGCGTCCAGTACCACTGACTTGGCATTTCTCGACAAAGACTTCTTTATTACCACTTCTTGATAAGACAGGAAAACACATGAATAGGAGGTTGTCAGTCAATTATCTGCAACTTAGTGCTGCTGCAACAAAATCTAATAAAGATGATGGATCTAGAAGGAGGAGTTCAAGAAGACGGGCTAGTGAGACGAGCTATGATGACAGTACTGGTAACATGTCTAGACGACCACTTTCAAAGAATGACATCAACTTAATATACCGTTCACAAGTGCCTCAAGTTACTGATACATTATGGCACCTTAAGGCTAGGGATATGCTACCAGCAGTATGGTTTATTTTTAGCAGGAAAGGTTGTGATGCTGCTGTTCAGTACATTCAAGATTGCAAACTTCTAGATGACTGTGAAGCAAGTGAGGTTGAATTAGCGTTGAAGAGGTTCCGCATTAAGTATCCGGATGCTATCAGGGAGAGTGCAGTGAAGGGGTTACTGCGAGGGGTTGCTGCCCATCATGCTGGCTGTCTACCTTTATGGAAATCATTCATAGAAGAGCTGTTTCAGCGTGGTCTTGTTAAGGTTGTATTTGCTACAGAAACACTTGCTGCTGGAATCAATATGCCTGCTAGGACAGCCATTATTGCATCCCTCAGCAAAAGGAGTGACAGTGGACGTACCCTATTGAGCTCAAATGAACTACTTCAAATGGCTGGCCGTGCTGGACGTAGAGGCACAGATGAAAGGGGTCATGTAGTGCTTATTCAAAATCCTTACGAGGGTGCTGAAGCTGGTTGCAAGGTTCTTTTTGCTGGACTTGAACCTCTGGTATCACAGTTTACTGCTTCATATGGAATGGTGCTAAATCTTCTTGCCGGTTCAAAAGTCACTCGTAGATCCAGTGAATCAGATGATACAAAAGCCTCCCAACCTGGGCGAACTTTGGACGAAGCTAGAAAGCTAGTTGAGCAAAGTTTTGGAAACTATGTTGGCAGCAATGTTATGGTTGCTGCAAAAGAGGAGCTTGCTAGAATTGAGAAAGAAATAGAGATGCTGACTTTGGAAATTAGCGATGATGCCATCGACAGAAAAAGCAGGAAGCTCTTGTCTGGACCAGCATACAAGGAGATTGCTGATCTACAGGAAGAATTAAGGGCAGAGAAACGCCTAAGGACTGAACTTCGGAAAAGAATGGAATCTCAGAAGCTTTCTTCACTACGACCCTTATTAAAGGAGTGTGAAAATGGGCACTTGCCCTTTTTGTGCTTGCAGTATAAAGATTCAGAAGGAGTTCAACACTCCATCCCGACTGTTTATTTGGGGAAGGTTGAGTTGCTGAGTTGCTCAAAGCTTAAGAACATGGTTTCTGTGGACGATTCTTTTGCACTAAATGCAGTAGCAGCAGAGTCTGAACCAACTTCAGTTTTTGAACCATCATATTATGCGGCTCTTGGCTCTGACAATTCTTGGTACCTATTTACAGAAAAGTGGATCAAAACAATTTATAAGACAGGCTTTCCAAATGTTGCTTTAGCTCAAGGAGATGCTTTGCCTCGGGAAATAATGAGCACGCTTCTTGATAAGACGGAAATGAAGTGGGAGAAGCTTGCGGAGTCTGATCTTGGTGGTTTTTGGGGCATGGAAGGATCTCTTGAGACATGGTCTTGGAGTTTGAATGTTCCAGTCTTGAATAGTCTTTCTGAACATGATGAGCTTTTACTCAAGTCAGAAGCATATAATCATGCTATAGGGTGTTATAAAGAACAAAGAAGTAAAGTTTCACGTCTGAAGAAAAAGATATCGCGTACACAAGGCTTCAGAGAATACAAGAAGATCATTGACATGGCCAACTATACAGAGGAGAAGATCAAGCGCTTGAAGGGTAGATCAAGACGTTTGACCAATCGAATAGAGCAGATTGAACCATCTGGTTGGAAAGAGTTCTTGCAGATCAGCAATGTTATACATGAAACTCGGGCATTAGATATTAACACTCATACCATATTTCCACTTGGTGAAACTGCAGCCTCTATTCGAGGAGAAAATGAACTGTGGCTTGCCATGGTTCTTCGAAATAAGATCTTACTAAGTTTAAAGCCTACAGAACTTGCTGCTGTGTGCGCCAGTTTAGTATCTGAAGGGATCAAAATTCGTCCGTGGAAAAATAACAGCTACATATACGAACCTTCAAGTACAGTAATTGACGTGGTGAGCTTCTTGGATGAGCAAAGAAGCACTTTTTTACAGCTTCAGGAAAAGCATGGGGTAAATAAGCCTTGCTATTTGGATACCCAGTTTGCAGGTATGGTTGAAGCCTGGGTTTCTGGGTTGACTTGGAGGGAAATCATGATGGATTGTGCAATGGACGAGGGAGATTTAGCCCGCCTTCTACGGCGAACTATAGATCTGCTGGTGCAAATCCCCAAATTGCCTGATATTGACCCCGTCTTGCAGAGCAACGCAAAGACGGCGTCAAATATCATGGACCGCCCTCCGATAAGTGAGTTAGCTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000373 GO:0000375 GO:0000377 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006810 GO:0007275 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009790 GO:0009791 GO:0009793 GO:0009892 GO:0009987 GO:0010154 GO:0010467 GO:0010468 GO:0010494 GO:0010496 GO:0010497 GO:0010501 GO:0010605 GO:0010608 GO:0010629 GO:0016070 GO:0016071 GO:0016441 GO:0016458 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0022414 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0035770 GO:0036464 GO:0040029 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048316 GO:0048519 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0051179 GO:0051234 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD DSHCT Helicase_C

Protein Analysis

881

Amino Acids

99.12

Weight (kDa)

8.68

Isoelectric Point (pI)

49.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SH3_ISE2	PF25446	445 - 623	1.1e-86	ISE2, SH3 domain
DSHCT	PF08148	710 - 876	2e-34	DSHCT (NUC185) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013378)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70070
fragaria_vesca	FvH4_4g35290 FvH4_4g35290 FvH4_4g35290
malus_domestica	MD16G1083800.v1.1
prunus_persica	Prupe.1G262200_v2.0.a1
pyrus_communis	pycom16g07280
rosa_chinensis	RchiOBHm_Chr4g0444891
rosa_laevigata	RLG00000005791
rosa_multiflora	Rmu_sc0006845.1_g000003 Rmu_sc0013783.1_g000003
rosa_roxburghii	Rroxscaffold_5G00385390
rosa_rugosa	Rorug04G0355800
rosa_samantha	Rh4AG417600 Rh4BG429400 Rh4CG444100 Rh4DG425300
rosa_wichuraiana	Rw4G035790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1635, 1887
Acc36I	ACCTGC	1 cut(s)	2420
Acc65I	GGTACC	1 cut(s)	1599
AccB1I	GGYRCC	2 cut(s)	432, 1599
AccI	GTMKAC	1 cut(s)	658
AccII	CGCG	1 cut(s)	1933
AccIII	TCCGGA	1 cut(s)	589
AciI	CCGC	6 cut(s)	60, 577, 1574, 1739, 2512, 2617
AclWI	GGATC	5 cut(s)	295, 1020, 1628, 1783, 2279
AcoI	YGGCCR	2 cut(s)	844, 1974
AcsI	RAATTY	1 cut(s)	2277
AcuI	CTGAAG	6 cut(s)	936, 1533, 1930, 1937, 2286, 2363
AcyI	GRCGYC	1 cut(s)	2600
AdeI	CACNNNGTG	1 cut(s)	2144
AfaI	GTAC	7 cut(s)	150, 343, 509, 808, 1601, 1936, 2323
AfeI	AGCGCT	1 cut(s)	2003
AfiI	CCNNNNNNNGG	3 cut(s)	37, 908, 1062
AflII	CTTAAG	2 cut(s)	437, 1481
AflIII	ACRYGT	1 cut(s)	351
AjiI	CACGTC	2 cut(s)	1913, 2335
AjnI	CCWGG	2 cut(s)	1060, 2444
Alw21I	GWGCWC	2 cut(s)	821, 1700
Alw26I	GTCTC	2 cut(s)	317, 1778
AlwI	GGATC	5 cut(s)	295, 1020, 1628, 1783, 2279
AlwNI	CAGNNNCTG	1 cut(s)	1538
Ama87I	CYCGRG	2 cut(s)	1683, 2103
Aor13HI	TCCGGA	1 cut(s)	589
Aor51HI	AGCGCT	1 cut(s)	2003
AoxI	GGCC	2 cut(s)	844, 1974
ApoI	RAATTY	1 cut(s)	2277
ArsI	GACNNNNNNTTYG	6 cut(s)	1429, 1461, 1493, 1525, 2585, 2617
Asp700I	GAANNNNTTC	6 cut(s)	12, 572, 674, 831, 1419, 2069
Asp718I	GGTACC	1 cut(s)	1599
AspLEI	GCGC	2 cut(s)	2004, 2252
AspS9I	GGNCC	2 cut(s)	1241, 2614
AsuHPI	GGTGA	2 cut(s)	2156, 2350
AsuII	TTCGAA	1 cut(s)	2200
AvaI	CYCGRG	2 cut(s)	1683, 2103
AvaII	GGWCC	2 cut(s)	1241, 2614
AxyI	CCTNAGG	1 cut(s)	1298
BaeGI	GKGCMC	1 cut(s)	1380
BalI	TGGCCA	1 cut(s)	1976
BanI	GGYRCC	2 cut(s)	432, 1599
BanII	GRGCYC	1 cut(s)	821
BbsI	GAAGAC	1 cut(s)	316
Bbv12I	GWGCWC	2 cut(s)	821, 1700
BbvCI	CCTCAGC	1 cut(s)	782
BccI	CCATC	7 cut(s)	278, 651, 1217, 1439, 1570, 2062, 2473
BceAI	ACGGC	3 cut(s)	831, 2537, 2613
BcgI	CGANNNNNNTGC	2 cut(s)	1493, 1527
BciT130I	CCWGG	2 cut(s)	1062, 2446
BciVI	GTATCC	2 cut(s)	597, 2410
BcoDI	GTCTC	2 cut(s)	317, 1778
BfaI	CTAG	9 cut(s)	291, 318, 357, 444, 530, 759, 1083, 1091, 1158
BfmI	CTRYAG	6 cut(s)	723, 1268, 1875, 2151, 2229, 2529
BfoI	RGCGCY	1 cut(s)	2005
BfrI	CTTAAG	2 cut(s)	437, 1481
BfuAI	ACCTGC	1 cut(s)	2420
BfuI	GTATCC	2 cut(s)	597, 2410
BglII	AGATCT	2 cut(s)	2208, 2533
BmcAI	AGTACT	1 cut(s)	343
Bme1390I	CCNGG	2 cut(s)	1062, 2446
Bme18I	GGWCC	2 cut(s)	1241, 2614
BmeT110I	CYCGRG	2 cut(s)	1683, 2103
BmgBI	CACGTC	2 cut(s)	1913, 2335
BmgT120I	GGNCC	2 cut(s)	1241, 2614
BmiI	GGNNCC	3 cut(s)	434, 575, 1601
BmrFI	CCNGG	2 cut(s)	1062, 2446
BmrI	ACTGGG	1 cut(s)	2416
BmsI	GCATC	6 cut(s)	484, 583, 785, 1170, 1195, 1663
BmuI	ACTGGG	1 cut(s)	2416
BpiI	GAAGAC	1 cut(s)	316
Bpu10I	CCTNAGC	1 cut(s)	782
Bpu14I	TTCGAA	1 cut(s)	2200
BpuEI	CTTGAG	4 cut(s)	396, 1650, 1802, 1835
BsaHI	GRCGYC	1 cut(s)	2600
BsaJI	CCNNGG	5 cut(s)	1061, 1682, 2190, 2285, 2445
BsaWI	WCCGGW	1 cut(s)	589
BsaXI	ACNNNNNCTCC	2 cut(s)	784, 814
Bsc4I	CCNNNNNNNGG	3 cut(s)	37, 908, 1062
Bse118I	RCCGGY	1 cut(s)	1004
Bse1I	ACTGG	6 cut(s)	146, 349, 1029, 1811, 2253, 2422
Bse21I	CCTNAGG	1 cut(s)	1298
Bse3DI	GCAATG	3 cut(s)	1132, 2092, 2496
BseAI	TCCGGA	1 cut(s)	589
BseBI	CCWGG	2 cut(s)	1062, 2446
BseDI	CCNNGG	5 cut(s)	1061, 1682, 2190, 2285, 2445
BseGI	GGATG	4 cut(s)	598, 776, 1431, 2356
BseLI	CCNNNNNNNGG	3 cut(s)	37, 908, 1062
BseMI	GCAATG	3 cut(s)	1132, 2092, 2496
BseMII	CTCAG	3 cut(s)	796, 1343, 1457
BseNI	ACTGG	6 cut(s)	146, 349, 1029, 1811, 2253, 2422
BseRI	GAGGAG	4 cut(s)	313, 1163, 2003, 2181
BseSI	GKGCMC	1 cut(s)	1380
BsgI	GTGCAG	1 cut(s)	630
Bsh1236I	CGCG	1 cut(s)	1933
BshFI	GGCC	2 cut(s)	846, 1976
BshNI	GGYRCC	2 cut(s)	432, 1599
BsiHKAI	GWGCWC	2 cut(s)	821, 1700
BsiHKCI	CYCGRG	2 cut(s)	1683, 2103
BsiSI	CCGG	2 cut(s)	590, 1005
BslI	CCNNNNNNNGG	3 cut(s)	37, 908, 1062
BsmAI	GTCTC	2 cut(s)	317, 1778
BsmBI	CGTCTC	1 cut(s)	317
BsnI	GGCC	2 cut(s)	846, 1976
BsoBI	CYCGRG	2 cut(s)	1683, 2103
Bsp119I	TTCGAA	1 cut(s)	2200
Bsp1286I	GDGCHC	3 cut(s)	821, 1380, 1700
Bsp13I	TCCGGA	1 cut(s)	589
Bsp19I	CCATGG	1 cut(s)	2190
BspACI	CCGC	6 cut(s)	60, 577, 1574, 1739, 2512, 2617
BspANI	GGCC	2 cut(s)	846, 1976
BspCNI	CTCAG	3 cut(s)	795, 1342, 1458
BspEI	TCCGGA	1 cut(s)	589
BspFNI	CGCG	1 cut(s)	1933
BspHI	TCATGA	1 cut(s)	2475
BspLI	GGNNCC	3 cut(s)	434, 575, 1601
BspMAI	CTGCAG	1 cut(s)	2155
BspMI	ACCTGC	1 cut(s)	2420
BspPI	GGATC	5 cut(s)	295, 1020, 1628, 1783, 2279
BspQI	GCTCTTC	1 cut(s)	678
BspT104I	TTCGAA	1 cut(s)	2200
BspT107I	GGYRCC	2 cut(s)	432, 1599
BspTI	CTTAAG	2 cut(s)	437, 1481
BsrDI	GCAATG	3 cut(s)	1132, 2092, 2496
BsrFI	RCCGGY	1 cut(s)	1004
BsrI	ACTGG	6 cut(s)	146, 349, 1029, 1811, 2253, 2422
BssAI	RCCGGY	1 cut(s)	1004
BssECI	CCNNGG	5 cut(s)	1061, 1682, 2190, 2285, 2445
BssNI	GRCGYC	1 cut(s)	2600
BssT1I	CCWWGG	1 cut(s)	2190
Bst2UI	CCWGG	2 cut(s)	1062, 2446
Bst4CI	ACNGT	9 cut(s)	67, 341, 398, 539, 800, 966, 1441, 2181, 2326
Bst6I	CTCTTC	2 cut(s)	563, 678
BstACI	GRCGYC	1 cut(s)	2600
BstAFI	CTTAAG	2 cut(s)	437, 1481
BstAPI	GCANNNNNTGC	2 cut(s)	68, 1520
BstBI	TTCGAA	1 cut(s)	2200
BstC8I	GCNNGC	9 cut(s)	652, 756, 844, 1155, 1397, 1700, 1737, 2187, 2512
BstDEI	CTNAG	6 cut(s)	251, 782, 1298, 1329, 1466, 2216
BstDSI	CCRYGG	2 cut(s)	2190, 2285
BstF5I	GGATG	4 cut(s)	598, 776, 1431, 2356
BstFNI	CGCG	1 cut(s)	1933
BstH2I	RGCGCY	1 cut(s)	2005
BstHHI	GCGC	2 cut(s)	2004, 2252
BstMAI	GTCTC	2 cut(s)	317, 1778
BstNI	CCWGG	2 cut(s)	1062, 2446
BstNSI	RCATGY	1 cut(s)	355
BstSCI	CCNGG	2 cut(s)	1060, 2444
BstSFI	CTRYAG	6 cut(s)	723, 1268, 1875, 2151, 2229, 2529
BstSLI	GKGCMC	1 cut(s)	1380
BstUI	CGCG	1 cut(s)	1933
BstV2I	GAAGAC	1 cut(s)	316
BstX2I	RGATCY	5 cut(s)	287, 1025, 1775, 2208, 2533
BstXI	CCANNNNNNTGG	4 cut(s)	159, 465, 650, 2061
BstYI	RGATCY	5 cut(s)	287, 1025, 1775, 2208, 2533
Bsu36I	CCTNAGG	1 cut(s)	1298
BsuI	GTATCC	2 cut(s)	597, 2410
BsuRI	GGCC	2 cut(s)	846, 1976
BtgI	CCRYGG	2 cut(s)	2190, 2285
BtgZI	GCGATG	1 cut(s)	1215
BtrI	CACGTC	2 cut(s)	1913, 2335
BtsCI	GGATG	4 cut(s)	598, 776, 1431, 2356
BtsI	GCAGTG	1 cut(s)	618
BtsIMutI	CAGTG	4 cut(s)	152, 618, 805, 1036
BveI	ACCTGC	1 cut(s)	2420
Cac8I	GCNNGC	9 cut(s)	652, 756, 844, 1155, 1397, 1700, 1737, 2187, 2512
CaiI	CAGNNNCTG	1 cut(s)	1538
CciI	TCATGA	1 cut(s)	2475
CfoI	GCGC	2 cut(s)	2004, 2252
Cfr10I	RCCGGY	1 cut(s)	1004
Cfr13I	GGNCC	2 cut(s)	1241, 2614
CseI	GACGC	2 cut(s)	131, 2589
Csp6I	GTAC	7 cut(s)	149, 342, 508, 807, 1600, 1935, 2322
CviQI	GTAC	7 cut(s)	149, 342, 508, 807, 1600, 1935, 2322
DdeI	CTNAG	6 cut(s)	251, 782, 1298, 1329, 1466, 2216
DraI	TTTAAA	1 cut(s)	2223
DraIII	CACNNNGTG	1 cut(s)	2144
EaeI	YGGCCR	2 cut(s)	844, 1974
Eam1104I	CTCTTC	2 cut(s)	563, 678
EarI	CTCTTC	2 cut(s)	563, 678
Ecl136II	GAGCTC	1 cut(s)	819
Eco130I	CCWWGG	1 cut(s)	2190
Eco24I	GRGCYC	1 cut(s)	821
Eco32I	GATATC	1 cut(s)	1929
Eco47I	GGWCC	2 cut(s)	1241, 2614
Eco47III	AGCGCT	1 cut(s)	2003
Eco53kI	GAGCTC	1 cut(s)	819
Eco57I	CTGAAG	6 cut(s)	936, 1533, 1930, 1937, 2286, 2363
Eco81I	CCTNAGG	1 cut(s)	1298
Eco88I	CYCGRG	2 cut(s)	1683, 2103
EcoICRI	GAGCTC	1 cut(s)	819
EcoRII	CCWGG	2 cut(s)	1060, 2444
EcoRV	GATATC	1 cut(s)	1929
EcoT14I	CCWWGG	1 cut(s)	2190
EcoT38I	GRGCYC	1 cut(s)	821
ErhI	CCWWGG	1 cut(s)	2190
Esp3I	CGTCTC	1 cut(s)	317
FalI	AAGNNNNNCTT	8 cut(s)	1137, 1169, 1628, 1660, 1764, 1796, 2350, 2382
FauI	CCCGC	1 cut(s)	2519
FauNDI	CATATG	2 cut(s)	50, 979
FblI	GTMKAC	1 cut(s)	658
FokI	GGATG	4 cut(s)	605, 763, 1418, 2363
FriOI	GRGCYC	1 cut(s)	821
FspBI	CTAG	9 cut(s)	291, 318, 357, 444, 530, 759, 1083, 1091, 1158
GlaI	GCGC	2 cut(s)	2003, 2251
HaeII	RGCGCY	1 cut(s)	2005
HaeIII	GGCC	2 cut(s)	846, 1976
HapII	CCGG	2 cut(s)	590, 1005
HgaI	GACGC	2 cut(s)	131, 2589
HhaI	GCGC	2 cut(s)	2004, 2252
Hin1I	GRCGYC	1 cut(s)	2600
Hin6I	GCGC	2 cut(s)	2002, 2250
HinP1I	GCGC	2 cut(s)	2002, 2250
HincII	GTYRAC	1 cut(s)	2460
HindII	GTYRAC	1 cut(s)	2460
HindIII	AAGCTT	3 cut(s)	1334, 1478, 1733
HinfI	GANTC	8 cut(s)	106, 744, 1034, 1325, 1409, 1505, 1535, 1742
HpaII	CCGG	2 cut(s)	590, 1005
HphI	GGTGA	2 cut(s)	2156, 2350
Hpy166II	GTNNAC	7 cut(s)	401, 659, 803, 969, 1501, 1937, 2460
Hpy8I	GTNNAC	7 cut(s)	401, 659, 803, 969, 1501, 1937, 2460
HpyAV	CCTTC	9 cut(s)	288, 610, 1409, 1447, 1766, 2002, 2261, 2325, 2525
HpyCH4III	ACNGT	9 cut(s)	67, 341, 398, 539, 800, 966, 1441, 2181, 2326
HpyCH4IV	ACGT	5 cut(s)	805, 856, 1912, 2023, 2334
HpyF3I	CTNAG	6 cut(s)	251, 782, 1298, 1329, 1466, 2216
HpySE526I	ACGT	5 cut(s)	805, 856, 1912, 2023, 2334
Hsp92I	GRCGYC	1 cut(s)	2600
HspAI	GCGC	2 cut(s)	2002, 2250
Kpn2I	TCCGGA	1 cut(s)	589
KpnI	GGTACC	1 cut(s)	1603
LguI	GCTCTTC	1 cut(s)	678
LmnI	GCTCC	1 cut(s)	1150
LweI	GCATC	6 cut(s)	484, 583, 785, 1170, 1195, 1663
MaeI	CTAG	9 cut(s)	291, 318, 357, 444, 530, 759, 1083, 1091, 1158
MaeII	ACGT	5 cut(s)	805, 856, 1912, 2023, 2334
MaeIII	GTNAC	6 cut(s)	127, 347, 415, 621, 794, 1015
MflI	RGATCY	5 cut(s)	287, 1025, 1775, 2208, 2533
MhlI	GDGCHC	3 cut(s)	821, 1380, 1700
MlsI	TGGCCA	1 cut(s)	1976
MluNI	TGGCCA	1 cut(s)	1976
MlyI	GAGTC	2 cut(s)	1544, 1751
MmeI	TCCRAC	2 cut(s)	74, 2042
Mox20I	TGGCCA	1 cut(s)	1976
MroI	TCCGGA	1 cut(s)	589
MroXI	GAANNNNTTC	6 cut(s)	12, 572, 674, 831, 1419, 2069
MscI	TGGCCA	1 cut(s)	1976
MseI	TTAA	9 cut(s)	389, 438, 582, 708, 1280, 1358, 1482, 2118, 2222
MslI	CAYNNNNRTG	1 cut(s)	1970
Msp20I	TGGCCA	1 cut(s)	1976
MspCI	CTTAAG	2 cut(s)	437, 1481
MspI	CCGG	2 cut(s)	590, 1005
MspR9I	CCNGG	2 cut(s)	1062, 2446
MvaI	CCWGG	2 cut(s)	1062, 2446
MvnI	CGCG	1 cut(s)	1933
NcoI	CCATGG	1 cut(s)	2190
NdeI	CATATG	2 cut(s)	50, 979
NlaIV	GGNNCC	3 cut(s)	434, 575, 1601
NmuCI	GTSAC	2 cut(s)	794, 1015
NspI	RCATGY	1 cut(s)	355
NspV	TTCGAA	1 cut(s)	2200
PagI	TCATGA	1 cut(s)	2475
PciI	ACATGT	1 cut(s)	351
PciSI	GCTCTTC	1 cut(s)	678
PdmI	GAANNNNTTC	6 cut(s)	12, 572, 674, 831, 1419, 2069
PfeI	GAWTC	6 cut(s)	106, 744, 1034, 1325, 1409, 1505
PflFI	GACNNNGTC	3 cut(s)	1789, 2573, 2599
PleI	GAGTC	2 cut(s)	1543, 1750
PpsI	GAGTC	2 cut(s)	1543, 1750
PscI	ACATGT	1 cut(s)	351
PsiI	TTATAA	2 cut(s)	1635, 1887
Psp124BI	GAGCTC	1 cut(s)	821
Psp6I	CCWGG	2 cut(s)	1060, 2444
PspGI	CCWGG	2 cut(s)	1060, 2444
PspN4I	GGNNCC	3 cut(s)	434, 575, 1601
PspPI	GGNCC	2 cut(s)	1241, 2614
PstI	CTGCAG	1 cut(s)	2155
PstNI	CAGNNNCTG	1 cut(s)	1538
PsuI	RGATCY	5 cut(s)	287, 1025, 1775, 2208, 2533
PsyI	GACNNNGTC	3 cut(s)	1789, 2573, 2599
RsaI	GTAC	7 cut(s)	150, 343, 509, 808, 1601, 1936, 2323
RsaNI	GTAC	7 cut(s)	149, 342, 508, 807, 1600, 1935, 2322
RseI	CAYNNNNRTG	1 cut(s)	1970
SacI	GAGCTC	1 cut(s)	821
SapI	GCTCTTC	1 cut(s)	678
SaqAI	TTAA	9 cut(s)	389, 438, 582, 708, 1280, 1358, 1482, 2118, 2222
Sau96I	GGNCC	2 cut(s)	1241, 2614
ScaI	AGTACT	1 cut(s)	343
SchI	GAGTC	2 cut(s)	1544, 1751
ScrFI	CCNGG	2 cut(s)	1062, 2446
SduI	GDGCHC	3 cut(s)	821, 1380, 1700
SfaNI	GCATC	6 cut(s)	484, 583, 785, 1170, 1195, 1663
SfcI	CTRYAG	6 cut(s)	723, 1268, 1875, 2151, 2229, 2529
SfuI	TTCGAA	1 cut(s)	2200
SinI	GGWCC	2 cut(s)	1241, 2614
SmiMI	CAYNNNNRTG	1 cut(s)	1970
SmlI	CTYRAG	6 cut(s)	411, 437, 1481, 1665, 1781, 1850
SmoI	CTYRAG	6 cut(s)	411, 437, 1481, 1665, 1781, 1850
SsiI	CCGC	6 cut(s)	60, 577, 1574, 1739, 2512, 2617
SspI	AATATT	1 cut(s)	12
SspMI	CTAG	9 cut(s)	291, 318, 357, 444, 530, 759, 1083, 1091, 1158
SstI	GAGCTC	1 cut(s)	821
StyD4I	CCNGG	2 cut(s)	1060, 2444
StyI	CCWWGG	1 cut(s)	2190
TaaI	ACNGT	9 cut(s)	67, 341, 398, 539, 800, 966, 1441, 2181, 2326
TaiI	ACGT	5 cut(s)	808, 859, 1915, 2026, 2337
TaqI	TCGA	5 cut(s)	170, 1212, 2035, 2164, 2200
TatI	WGTACW	3 cut(s)	341, 507, 2321
TauI	GCSGC	1 cut(s)	1577
TfiI	GAWTC	6 cut(s)	106, 744, 1034, 1325, 1409, 1505
Tru1I	TTAA	9 cut(s)	389, 438, 582, 708, 1280, 1358, 1482, 2118, 2222
Tru9I	TTAA	9 cut(s)	389, 438, 582, 708, 1280, 1358, 1482, 2118, 2222
TscAI	CASTG	4 cut(s)	159, 618, 805, 1036
TseFI	GTSAC	2 cut(s)	794, 1015
Tsp45I	GTSAC	2 cut(s)	794, 1015
TspGWI	ACGGA	2 cut(s)	1730, 2274
TspRI	CASTG	4 cut(s)	159, 618, 805, 1036
Tth111I	GACNNNGTC	3 cut(s)	1789, 2573, 2599
Vha464I	CTTAAG	2 cut(s)	437, 1481
VpaK11BI	GGWCC	2 cut(s)	1241, 2614
XapI	RAATTY	1 cut(s)	2277
XbaI	TCTAGA	3 cut(s)	290, 356, 529
XceI	RCATGY	1 cut(s)	355
XmiI	GTMKAC	1 cut(s)	658
XmnI	GAANNNNTTC	6 cut(s)	12, 572, 674, 831, 1419, 2069
XspI	CTAG	9 cut(s)	291, 318, 357, 444, 530, 759, 1083, 1091, 1158
ZrmI	AGTACT	1 cut(s)	343

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.