Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0019941

Physical Location & Seq

Genomic Coordinates Forward (+)

3814041 .. 3814338

Gene Structure 298 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ28721

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGAACGCAATTAAAGCGATTCCAGAGAGAAGCCAGCGCTACGGTGTTGAGCGTATTGAAGGTGGCATGATTGTTACTCACTACGATCCTAGTCGGGTCAAGAAGTTCCGTCAGTCATCTTTTTTCTTTAAAAATGATGATCTTGTGGGAATCACAGATACTAACAAGAAGTTAATGGGGTGGTTATTATCGGCGCAACCTCAAAGAACAGTGATATCAGTGGTGGGAATGGGGGGTTCGGGCAAGACCACCTTAGTTGCCAACACCTTCAACAGAAGTTGTGAAGCAACACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0002376 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009626 GO:0009987 GO:0012501 GO:0016020 GO:0019897 GO:0019898 GO:0023052 GO:0033554 GO:0034050 GO:0036094 GO:0044425 GO:0044459 GO:0044464 GO:0045087 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

98

Amino Acids

10.9

Weight (kDa)

9.91

Isoelectric Point (pI)

47.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NB-ARC	PF00931	53 - 93	7e-08	NB-ARC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0019941)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0006061 RchiOBHm_Chr5g0006071
rosa_multiflora	Rmu_sc0007990.1_g000001
rosa_samantha	Rh5AG342600 Rh5AG342900 Rh5AG343300 Rh6DG009800

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	80
AfeI	AGCGCT	1 cut(s)	38
AgsI	TTSAA	2 cut(s)	59, 271
AlwI	GGATC	1 cut(s)	80
Aor51HI	AGCGCT	1 cut(s)	38
AspLEI	GCGC	2 cut(s)	39, 196
BfaI	CTAG	1 cut(s)	90
BfoI	RGCGCY	1 cut(s)	40
Bsp143I	GATC	2 cut(s)	85, 139
BspPI	GGATC	1 cut(s)	80
BssMI	GATC	2 cut(s)	85, 139
Bst4CI	ACNGT	2 cut(s)	44, 211
BstC8I	GCNNGC	1 cut(s)	35
BstDEI	CTNAG	1 cut(s)	253
BstH2I	RGCGCY	1 cut(s)	40
BstHHI	GCGC	2 cut(s)	39, 196
BstKTI	GATC	2 cut(s)	88, 142
BstMBI	GATC	2 cut(s)	85, 139
BstMWI	GCNNNNNNNGC	1 cut(s)	14
BtsIMutI	CAGTG	2 cut(s)	216, 225
Cac8I	GCNNGC	1 cut(s)	35
CfoI	GCGC	2 cut(s)	39, 196
CspCI	CAANNNNNGTGG	2 cut(s)	238, 273
CviAII	CATG	1 cut(s)	67
CviJI	RGCY	1 cut(s)	33
CviKI_1	RGCY	1 cut(s)	33
DdeI	CTNAG	1 cut(s)	253
DpnI	GATC	2 cut(s)	87, 141
DpnII	GATC	2 cut(s)	85, 139
DraI	TTTAAA	1 cut(s)	130
Eco32I	GATATC	1 cut(s)	216
Eco47III	AGCGCT	1 cut(s)	38
EcoRV	GATATC	1 cut(s)	216
FaeI	CATG	1 cut(s)	70
FaiI	YATR	1 cut(s)	68
FalI	AAGNNNNNCTT	3 cut(s)	236, 268, 276
FatI	CATG	1 cut(s)	66
FspBI	CTAG	1 cut(s)	90
GlaI	GCGC	2 cut(s)	38, 195
HaeII	RGCGCY	1 cut(s)	40
HhaI	GCGC	2 cut(s)	39, 196
Hin1II	CATG	1 cut(s)	70
Hin6I	GCGC	2 cut(s)	37, 194
HinP1I	GCGC	2 cut(s)	37, 194
HinfI	GANTC	2 cut(s)	19, 150
Hpy188III	TCNNGA	2 cut(s)	23, 100
HpyAV	CCTTC	2 cut(s)	53, 277
HpyCH4III	ACNGT	2 cut(s)	44, 211
HpyF10VI	GCNNNNNNNGC	1 cut(s)	14
HpyF3I	CTNAG	1 cut(s)	253
Hsp92II	CATG	1 cut(s)	70
HspAI	GCGC	2 cut(s)	37, 194
Kzo9I	GATC	2 cut(s)	85, 139
LpnPI	CCDG	2 cut(s)	36, 47
MaeI	CTAG	1 cut(s)	90
MaeIII	GTNAC	1 cut(s)	73
MalI	GATC	2 cut(s)	87, 141
MboI	GATC	2 cut(s)	85, 139
MluCI	AATT	1 cut(s)	9
MnlI	CCTC	1 cut(s)	210
MseI	TTAA	3 cut(s)	12, 129, 173
MwoI	GCNNNNNNNGC	1 cut(s)	14
NdeII	GATC	2 cut(s)	85, 139
NlaIII	CATG	1 cut(s)	70
PfeI	GAWTC	2 cut(s)	19, 150
SaqAI	TTAA	3 cut(s)	12, 129, 173
Sau3AI	GATC	2 cut(s)	85, 139
SetI	ASST	4 cut(s)	64, 202, 254, 269
Sse9I	AATT	1 cut(s)	9
SspMI	CTAG	1 cut(s)	90
TaaI	ACNGT	2 cut(s)	44, 211
TasI	AATT	1 cut(s)	9
TfiI	GAWTC	2 cut(s)	19, 150
Tru1I	TTAA	3 cut(s)	12, 129, 173
Tru9I	TTAA	3 cut(s)	12, 129, 173
TscAI	CASTG	2 cut(s)	216, 225
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	98
TspRI	CASTG	2 cut(s)	216, 225
XspI	CTAG	1 cut(s)	90

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.