Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007990.1

Orthogroup ID

OG0019941

Physical Location & Seq

Genomic Coordinates Forward (+)

562 .. 1550

Gene Structure 989 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007990.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

atgggttcagctgcaatagacctcctgattggcaaagtacgtatagtatcatctttcaaaaatgaagtatccctgttaggagaagttggcaatgagcttgaagaaatcaagcttgtatcgctaaccatgaaagccttcttaaatgatgcagaaagaaagggagctctaagcgaagtagaaaaaacgtgggtcgcaaatatagccaacaagctgcagcagatcatgaacggaattaaagcgattccagagagaagccagcgctacggtgttgagcgtattgaaggtggcatgattgttactcactacgatcctagtcgggtcaagaagttccgtcagtcatctttgttctttaaaaatgatgatcttgtgggaatcacagatactaacaagaagttaatggggtggttattatcggcgcaacctcaaacaacaagtcatgatcaagacgcgctttttggagcggaaaagaaagacattcctcttgattttagcaccatgagctacacgcatttggtggaaatcctcgtccgctacttgcagcaaaagaggtacgtggttgtcttagatgatgtgtgggatatagatatttggagacaaatacatgtcgcatttccggatggaagaaatggaagtcgggtcatgcttgcaactcgaaaagaagacgttgcttctttttcatttggagttgaaaagttaacttcaccatgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0002376 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009626 GO:0009987 GO:0012501 GO:0016020 GO:0019897 GO:0019898 GO:0023052 GO:0033554 GO:0034050 GO:0036094 GO:0044425 GO:0044459 GO:0044464 GO:0045087 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

236

Amino Acids

26.65

Weight (kDa)

6.92

Isoelectric Point (pI)

35.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019941)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0006061 RchiOBHm_Chr5g0006071
rosa_multiflora	Rmu_sc0007990.1_g000001
rosa_samantha	Rh5AG342600 Rh5AG342900 Rh5AG343300 Rh6DG009800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	461
AccII	CGCG	1 cut(s)	449
AccIII	TCCGGA	1 cut(s)	613
AciI	CCGC	2 cut(s)	461, 529
AclWI	GGATC	1 cut(s)	302
AfaI	GTAC	2 cut(s)	39, 551
AfeI	AGCGCT	1 cut(s)	260
AflIII	ACRYGT	1 cut(s)	601
AgsI	TTSAA	4 cut(s)	58, 101, 281, 689
AluBI	AGCT	6 cut(s)	11, 97, 112, 164, 211, 501
AluI	AGCT	6 cut(s)	11, 97, 112, 164, 211, 501
Alw21I	GWGCWC	1 cut(s)	166
Alw26I	GTCTC	1 cut(s)	586
AlwI	GGATC	1 cut(s)	302
Aor13HI	TCCGGA	1 cut(s)	613
Aor51HI	AGCGCT	1 cut(s)	260
ApeKI	GCWGC	4 cut(s)	11, 211, 214, 538
ArsI	GACNNNNNNTTYG	4 cut(s)	418, 437, 450, 469
Asp700I	GAANNNNTTC	1 cut(s)	134
AspLEI	GCGC	3 cut(s)	261, 418, 451
AsuHPI	GGTGA	1 cut(s)	693
BanII	GRGCYC	1 cut(s)	166
BbsI	GAAGAC	1 cut(s)	666
Bbv12I	GWGCWC	1 cut(s)	166
BbvI	GCAGC	3 cut(s)	198, 226, 550
BccI	CCATC	1 cut(s)	611
BciVI	GTATCC	1 cut(s)	79
BclI	TGATCA	1 cut(s)	439
BcoDI	GTCTC	1 cut(s)	586
BfaI	CTAG	1 cut(s)	312
BfmI	CTRYAG	1 cut(s)	212
BfoI	RGCGCY	1 cut(s)	262
BfuI	GTATCC	1 cut(s)	79
BisI	GCNGC	4 cut(s)	12, 212, 215, 539
BlsI	GCNGC	4 cut(s)	13, 213, 216, 540
BmsI	GCATC	1 cut(s)	136
BpiI	GAAGAC	1 cut(s)	666
BsaAI	YACGTR	2 cut(s)	41, 553
BsaWI	WCCGGW	1 cut(s)	613
Bse3DI	GCAATG	1 cut(s)	97
BseAI	TCCGGA	1 cut(s)	613
BseGI	GGATG	1 cut(s)	622
BseMI	GCAATG	1 cut(s)	97
BseXI	GCAGC	3 cut(s)	198, 226, 550
Bsh1236I	CGCG	1 cut(s)	449
BsiHKAI	GWGCWC	1 cut(s)	166
BsiSI	CCGG	1 cut(s)	614
BsmAI	GTCTC	1 cut(s)	586
Bsp1286I	GDGCHC	1 cut(s)	166
Bsp13I	TCCGGA	1 cut(s)	613
Bsp143I	GATC	4 cut(s)	219, 307, 361, 439
BspACI	CCGC	2 cut(s)	461, 529
BspEI	TCCGGA	1 cut(s)	613
BspFNI	CGCG	1 cut(s)	449
BspHI	TCATGA	2 cut(s)	222, 436
BspMAI	CTGCAG	1 cut(s)	216
BspPI	GGATC	1 cut(s)	302
BsrBI	CCGCTC	1 cut(s)	461
BsrDI	GCAATG	1 cut(s)	97
BssMI	GATC	4 cut(s)	219, 307, 361, 439
Bst4CI	ACNGT	1 cut(s)	266
BstBAI	YACGTR	2 cut(s)	41, 553
BstC8I	GCNNGC	2 cut(s)	257, 645
BstDEI	CTNAG	2 cut(s)	167, 562
BstF5I	GGATG	1 cut(s)	622
BstFNI	CGCG	1 cut(s)	449
BstH2I	RGCGCY	1 cut(s)	262
BstHHI	GCGC	3 cut(s)	261, 418, 451
BstKTI	GATC	4 cut(s)	222, 310, 364, 442
BstMAI	GTCTC	1 cut(s)	586
BstMBI	GATC	4 cut(s)	219, 307, 361, 439
BstMWI	GCNNNNNNNGC	3 cut(s)	118, 200, 498
BstNSI	RCATGY	1 cut(s)	605
BstSFI	CTRYAG	1 cut(s)	212
BstSNI	TACGTA	1 cut(s)	41
BstUI	CGCG	1 cut(s)	449
BstV1I	GCAGC	3 cut(s)	198, 226, 550
BstV2I	GAAGAC	1 cut(s)	666
BsuI	GTATCC	1 cut(s)	79
BtsCI	GGATG	1 cut(s)	622
Cac8I	GCNNGC	2 cut(s)	257, 645
CciI	TCATGA	2 cut(s)	222, 436
CfoI	GCGC	3 cut(s)	261, 418, 451
CseI	GACGC	1 cut(s)	455
Csp6I	GTAC	2 cut(s)	38, 550
CviAII	CATG	8 cut(s)	127, 223, 289, 437, 496, 602, 640, 705
CviJI	RGCY	9 cut(s)	11, 97, 112, 134, 164, 203, 211, 255, 501
CviKI_1	RGCY	9 cut(s)	11, 97, 112, 134, 164, 203, 211, 255, 501
CviQI	GTAC	2 cut(s)	38, 550
DdeI	CTNAG	2 cut(s)	167, 562
DpnI	GATC	4 cut(s)	221, 309, 363, 441
DpnII	GATC	4 cut(s)	219, 307, 361, 439
DraI	TTTAAA	1 cut(s)	352
Ecl136II	GAGCTC	1 cut(s)	164
Eco105I	TACGTA	1 cut(s)	41
Eco24I	GRGCYC	1 cut(s)	166
Eco47III	AGCGCT	1 cut(s)	260
Eco53kI	GAGCTC	1 cut(s)	164
EcoICRI	GAGCTC	1 cut(s)	164
EcoT38I	GRGCYC	1 cut(s)	166
FaeI	CATG	8 cut(s)	130, 226, 292, 440, 499, 605, 643, 708
FalI	AAGNNNNNCTT	2 cut(s)	435, 467
FatI	CATG	8 cut(s)	126, 222, 288, 436, 495, 601, 639, 704
FbaI	TGATCA	1 cut(s)	439
Fnu4HI	GCNGC	4 cut(s)	12, 212, 215, 539
FokI	GGATG	1 cut(s)	629
FriOI	GRGCYC	1 cut(s)	166
Fsp4HI	GCNGC	4 cut(s)	12, 212, 215, 539
FspBI	CTAG	1 cut(s)	312
GlaI	GCGC	3 cut(s)	260, 417, 450
GluI	GCNGC	4 cut(s)	12, 212, 215, 539
HaeII	RGCGCY	1 cut(s)	262
HapII	CCGG	1 cut(s)	614
HgaI	GACGC	1 cut(s)	455
HhaI	GCGC	3 cut(s)	261, 418, 451
Hin1II	CATG	8 cut(s)	130, 226, 292, 440, 499, 605, 643, 708
Hin6I	GCGC	3 cut(s)	259, 416, 449
HinP1I	GCGC	3 cut(s)	259, 416, 449
HincII	GTYRAC	1 cut(s)	696
HindII	GTYRAC	1 cut(s)	696
HindIII	AAGCTT	1 cut(s)	110
HinfI	GANTC	2 cut(s)	241, 372
HpaI	GTTAAC	1 cut(s)	696
HpaII	CCGG	1 cut(s)	614
HphI	GGTGA	1 cut(s)	693
Hpy166II	GTNNAC	1 cut(s)	696
Hpy188III	TCNNGA	8 cut(s)	25, 223, 245, 322, 437, 443, 482, 614
Hpy8I	GTNNAC	1 cut(s)	696
HpyAV	CCTTC	2 cut(s)	145, 275
HpyCH4III	ACNGT	1 cut(s)	266
HpyCH4IV	ACGT	4 cut(s)	40, 185, 552, 663
HpyCH4V	TGCA	5 cut(s)	14, 149, 214, 538, 647
HpyF10VI	GCNNNNNNNGC	3 cut(s)	118, 200, 498
HpyF3I	CTNAG	2 cut(s)	167, 562
HpySE526I	ACGT	4 cut(s)	40, 185, 552, 663
Hsp92II	CATG	8 cut(s)	130, 226, 292, 440, 499, 605, 643, 708
HspAI	GCGC	3 cut(s)	259, 416, 449
Kpn2I	TCCGGA	1 cut(s)	613
Ksp22I	TGATCA	1 cut(s)	439
KspAI	GTTAAC	1 cut(s)	696
Kzo9I	GATC	4 cut(s)	219, 307, 361, 439
LmnI	GCTCC	2 cut(s)	161, 458
LpnPI	CCDG	5 cut(s)	38, 86, 258, 269, 627
Lsp1109I	GCAGC	3 cut(s)	198, 226, 550
LweI	GCATC	1 cut(s)	136
MaeI	CTAG	1 cut(s)	312
MaeII	ACGT	4 cut(s)	40, 185, 552, 663
MaeIII	GTNAC	1 cut(s)	295
MalI	GATC	4 cut(s)	221, 309, 363, 441
MbiI	CCGCTC	1 cut(s)	461
MboI	GATC	4 cut(s)	219, 307, 361, 439
MboII	GAAGA	3 cut(s)	113, 633, 671
MhlI	GDGCHC	1 cut(s)	166
MluCI	AATT	1 cut(s)	231
MnlI	CCTC	5 cut(s)	32, 432, 489, 533, 540
MroI	TCCGGA	1 cut(s)	613
MroXI	GAANNNNTTC	1 cut(s)	134
MseI	TTAA	5 cut(s)	140, 234, 351, 395, 695
MspA1I	CMGCKG	1 cut(s)	11
MspI	CCGG	1 cut(s)	614
MvnI	CGCG	1 cut(s)	449
MwoI	GCNNNNNNNGC	3 cut(s)	118, 200, 498
NdeII	GATC	4 cut(s)	219, 307, 361, 439
NlaIII	CATG	8 cut(s)	130, 226, 292, 440, 499, 605, 643, 708
NspI	RCATGY	1 cut(s)	605
PagI	TCATGA	2 cut(s)	222, 436
PciI	ACATGT	1 cut(s)	601
PdmI	GAANNNNTTC	1 cut(s)	134
PfeI	GAWTC	2 cut(s)	241, 372
PkrI	GCNGC	4 cut(s)	13, 213, 216, 540
Ppu21I	YACGTR	2 cut(s)	41, 553
PscI	ACATGT	1 cut(s)	601
Psp124BI	GAGCTC	1 cut(s)	166
PstI	CTGCAG	1 cut(s)	216
PvuII	CAGCTG	1 cut(s)	11
RsaI	GTAC	2 cut(s)	39, 551
RsaNI	GTAC	2 cut(s)	38, 550
SacI	GAGCTC	1 cut(s)	166
SaqAI	TTAA	5 cut(s)	140, 234, 351, 395, 695
SatI	GCNGC	4 cut(s)	12, 212, 215, 539
Sau3AI	GATC	4 cut(s)	219, 307, 361, 439
SduI	GDGCHC	1 cut(s)	166
SfaNI	GCATC	1 cut(s)	136
SfcI	CTRYAG	1 cut(s)	212
SnaBI	TACGTA	1 cut(s)	41
Sse9I	AATT	1 cut(s)	231
SsiI	CCGC	2 cut(s)	461, 529
SspMI	CTAG	1 cut(s)	312
SstI	GAGCTC	1 cut(s)	166
TaaI	ACNGT	1 cut(s)	266
TaiI	ACGT	4 cut(s)	43, 188, 555, 666
TaqI	TCGA	1 cut(s)	652
TasI	AATT	1 cut(s)	231
TfiI	GAWTC	2 cut(s)	241, 372
Tru1I	TTAA	5 cut(s)	140, 234, 351, 395, 695
Tru9I	TTAA	5 cut(s)	140, 234, 351, 395, 695
TseI	GCWGC	4 cut(s)	11, 211, 214, 538
TspDTI	ATGAA	4 cut(s)	78, 143, 239, 666
TspGWI	ACGGA	2 cut(s)	243, 320
XceI	RCATGY	1 cut(s)	605
XmnI	GAANNNNTTC	1 cut(s)	134
XspI	CTAG	1 cut(s)	312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.