Rh5AG342600

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0019941
Physical Location & Seq
Reverse (-)
56004849 .. 56005288
440 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG342600.1

Sequence Viewer

Length: 366 bp
ATGATCAAAGCCATTTCAGAGAGGAATAAAAGATACGGTGTTGACCTTGTAGGAGGAGCAACTACATCCGAAGATATTCAGAAATTGGAGCAGAACCAAGCAGAGTCTTCGTTTTTCATTATGGAAGACGAACTGGTTGGGATTGAAGGCAAGAAGCAGATACTAATGGGATGGCTAATGGATGACGAGCAACACCAAACTGTTATATCTGTGGTGGGCATGGGAGGTTCTGGAAAGACAACTCTAGTTGCCAAGACCTTCACCAATGAACTGCTTGATAAGGGAACTCTACAAATCAAGGAAGGAAAATTTCCCTGCAATTTTGAATGCCATGAGCCGCATAGAATTGCTAGAGTTACTAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

121

Amino Acids

13.46

Weight (kDa)

5.36

Isoelectric Point (pI)

35.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 51 - 89 2e-07 NB-ARC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019941)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0006061 RchiOBHm_Chr5g0006071
rosa_multiflora Rmu_sc0007990.1_g000001
rosa_samantha Rh5AG342600 Rh5AG342900 Rh5AG343300 Rh6DG009800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 338
AcsI RAATTY 1 cut(s) 308
AgsI TTSAA 2 cut(s) 146, 326
AhlI ACTAGT 1 cut(s) 359
ApoI RAATTY 1 cut(s) 308
Asp700I GAANNNNTTC 1 cut(s) 75
AsuHPI GGTGA 1 cut(s) 253
BbsI GAAGAC 2 cut(s) 99, 132
BccI CCATC 1 cut(s) 165
BcgI CGANNNNNNTGC 2 cut(s) 90, 124
BclI TGATCA 1 cut(s) 3
BcuI ACTAGT 1 cut(s) 359
BfaI CTAG 3 cut(s) 245, 351, 360
BisI GCNGC 1 cut(s) 338
BlsI GCNGC 1 cut(s) 339
BpiI GAAGAC 2 cut(s) 99, 132
Bse1I ACTGG 1 cut(s) 138
BseGI GGATG 3 cut(s) 65, 176, 187
BseNI ACTGG 1 cut(s) 138
BseRI GAGGAG 1 cut(s) 69
BsmI GAATGC 1 cut(s) 332
Bsp143I GATC 1 cut(s) 3
BspACI CCGC 1 cut(s) 338
BsrI ACTGG 1 cut(s) 138
BssMI GATC 1 cut(s) 3
Bst4CI ACNGT 2 cut(s) 38, 202
BstF5I GGATG 3 cut(s) 65, 176, 187
BstKTI GATC 1 cut(s) 6
BstMBI GATC 1 cut(s) 3
BstV2I GAAGAC 2 cut(s) 99, 132
BtsCI GGATG 3 cut(s) 65, 176, 187
CviAII CATG 2 cut(s) 220, 332
CviJI RGCY 3 cut(s) 11, 175, 337
CviKI_1 RGCY 3 cut(s) 11, 175, 337
DpnI GATC 1 cut(s) 5
DpnII GATC 1 cut(s) 3
FaeI CATG 2 cut(s) 223, 335
FaiI YATR 5 cut(s) 122, 206, 221, 333, 342
FatI CATG 2 cut(s) 219, 331
FbaI TGATCA 1 cut(s) 3
Fnu4HI GCNGC 1 cut(s) 338
FokI GGATG 3 cut(s) 52, 183, 194
Fsp4HI GCNGC 1 cut(s) 338
FspBI CTAG 3 cut(s) 245, 351, 360
GluI GCNGC 1 cut(s) 338
Hin1II CATG 2 cut(s) 223, 335
HincII GTYRAC 1 cut(s) 43
HindII GTYRAC 1 cut(s) 43
HinfI GANTC 1 cut(s) 104
HphI GGTGA 1 cut(s) 253
Hpy166II GTNNAC 1 cut(s) 43
Hpy188I TCNGA 3 cut(s) 19, 70, 81
Hpy188III TCNNGA 1 cut(s) 231
Hpy8I GTNNAC 1 cut(s) 43
HpyAV CCTTC 3 cut(s) 140, 268, 296
HpyCH4III ACNGT 2 cut(s) 38, 202
HpyCH4V TGCA 1 cut(s) 318
Hsp92II CATG 2 cut(s) 223, 335
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 1 cut(s) 3
LmnI GCTCC 2 cut(s) 56, 88
LpnPI CCDG 3 cut(s) 119, 216, 328
MaeI CTAG 3 cut(s) 245, 351, 360
MaeIII GTNAC 1 cut(s) 355
MalI GATC 1 cut(s) 5
MboI GATC 1 cut(s) 3
MboII GAAGA 3 cut(s) 83, 99, 137
MluCI AATT 4 cut(s) 83, 308, 319, 345
MlyI GAGTC 1 cut(s) 113
MnlI CCTC 3 cut(s) 15, 47, 218
MroXI GAANNNNTTC 1 cut(s) 75
MseI TTAA 1 cut(s) 364
Mva1269I GAATGC 1 cut(s) 332
NdeII GATC 1 cut(s) 3
NlaIII CATG 2 cut(s) 223, 335
PctI GAATGC 1 cut(s) 332
PdmI GAANNNNTTC 1 cut(s) 75
PkrI GCNGC 1 cut(s) 339
PleI GAGTC 1 cut(s) 112
PpsI GAGTC 1 cut(s) 112
SaqAI TTAA 1 cut(s) 364
SatI GCNGC 1 cut(s) 338
Sau3AI GATC 1 cut(s) 3
SchI GAGTC 1 cut(s) 113
SetI ASST 3 cut(s) 48, 229, 260
SpeI ACTAGT 1 cut(s) 359
Sse9I AATT 4 cut(s) 83, 308, 319, 345
SsiI CCGC 1 cut(s) 338
SspMI CTAG 3 cut(s) 245, 351, 360
TaaI ACNGT 2 cut(s) 38, 202
TasI AATT 4 cut(s) 83, 308, 319, 345
TauI GCSGC 1 cut(s) 340
Tru1I TTAA 1 cut(s) 364
Tru9I TTAA 1 cut(s) 364
TspDTI ATGAA 2 cut(s) 106, 282
XapI RAATTY 1 cut(s) 308
XmnI GAANNNNTTC 1 cut(s) 75
XspI CTAG 3 cut(s) 245, 351, 360
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.