Rh5AG342900

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0019941
Physical Location & Seq
Reverse (-)
56085313 .. 56086360
1048 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG342900.1

Sequence Viewer

Length: 483 bp
ATGGATTTGAACCAGACCGACCATCAGTGCAGTTCTTCTGTGAGCTTTCAGATCTTATCAAAAAGATCCATCAACACTTGGCATAAAATTGCAAAGAAGTTGCAGAAAATTACTGACATGATCAAAGCCATTCCAGAGAGGAATAAAAGATACGGTGTTGGCCTTGTAGGAGGAGCAACTACATCTGAAGATATTCAGAAATTGGTGCAGAACCAAGCGGAGTCTTCATTTTTCATTATGGAAGACGAACTGGTTGGGATTGAAGGCAAGAAGCAGATACTAATGGGATGGCTAATGGATGACGAGCAACACCAAACTGTTATATCTGTGGTGGGCATGGGAGGTTCTGGAAAGACAACTCTAGTTGCCAAGACCTTCACCAATGAACTGCTTGATCAGGGAACTCTACAAATCAAGGAAGGAAGATTTCCCTGTGAATTTGAATGCCATGAGCCGCATAGAATTGCTAGAGTTACTAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

160

Amino Acids

17.94

Weight (kDa)

6.51

Isoelectric Point (pI)

40.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 90 - 128 3.2e-07 NB-ARC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019941)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0006061 RchiOBHm_Chr5g0006071
rosa_multiflora Rmu_sc0007990.1_g000001
rosa_samantha Rh5AG342600 Rh5AG342900 Rh5AG343300 Rh6DG009800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 218, 455
AclWI GGATC 1 cut(s) 60
AcsI RAATTY 1 cut(s) 437
AcuI CTGAAG 1 cut(s) 207
AgsI TTSAA 3 cut(s) 10, 263, 443
AhlI ACTAGT 1 cut(s) 476
AluBI AGCT 1 cut(s) 45
AluI AGCT 1 cut(s) 45
AlwI GGATC 1 cut(s) 60
AoxI GGCC 1 cut(s) 160
ApoI RAATTY 1 cut(s) 437
Asp700I GAANNNNTTC 1 cut(s) 192
AsuHPI GGTGA 1 cut(s) 370
BbsI GAAGAC 2 cut(s) 216, 249
BccI CCATC 3 cut(s) 30, 77, 282
BclI TGATCA 2 cut(s) 120, 394
BcuI ACTAGT 1 cut(s) 476
BfaI CTAG 3 cut(s) 362, 468, 477
BglII AGATCT 1 cut(s) 51
BisI GCNGC 1 cut(s) 455
BlsI GCNGC 1 cut(s) 456
BpiI GAAGAC 2 cut(s) 216, 249
Bse1I ACTGG 1 cut(s) 255
BseGI GGATG 2 cut(s) 293, 304
BseNI ACTGG 1 cut(s) 255
BseRI GAGGAG 1 cut(s) 186
BsgI GTGCAG 2 cut(s) 49, 227
BshFI GGCC 1 cut(s) 162
BsmI GAATGC 1 cut(s) 449
BsnI GGCC 1 cut(s) 162
Bsp143I GATC 4 cut(s) 51, 65, 120, 394
BspACI CCGC 2 cut(s) 218, 455
BspANI GGCC 1 cut(s) 162
BspPI GGATC 1 cut(s) 60
BsrI ACTGG 1 cut(s) 255
BssMI GATC 4 cut(s) 51, 65, 120, 394
Bst4CI ACNGT 2 cut(s) 155, 319
BstF5I GGATG 2 cut(s) 293, 304
BstKTI GATC 4 cut(s) 54, 68, 123, 397
BstMBI GATC 4 cut(s) 51, 65, 120, 394
BstV2I GAAGAC 2 cut(s) 216, 249
BstX2I RGATCY 2 cut(s) 51, 65
BstYI RGATCY 2 cut(s) 51, 65
BsuRI GGCC 1 cut(s) 162
BtsCI GGATG 2 cut(s) 293, 304
BtsIMutI CAGTG 1 cut(s) 32
CviAII CATG 3 cut(s) 118, 337, 449
CviJI RGCY 5 cut(s) 45, 128, 162, 292, 454
CviKI_1 RGCY 5 cut(s) 45, 128, 162, 292, 454
DpnI GATC 4 cut(s) 53, 67, 122, 396
DpnII GATC 4 cut(s) 51, 65, 120, 394
Eco57I CTGAAG 1 cut(s) 207
FaeI CATG 3 cut(s) 121, 340, 452
FaiI YATR 7 cut(s) 84, 119, 239, 323, 338, 450, 459
FatI CATG 3 cut(s) 117, 336, 448
FbaI TGATCA 2 cut(s) 120, 394
Fnu4HI GCNGC 1 cut(s) 455
FokI GGATG 2 cut(s) 300, 311
Fsp4HI GCNGC 1 cut(s) 455
FspBI CTAG 3 cut(s) 362, 468, 477
GluI GCNGC 1 cut(s) 455
HaeIII GGCC 1 cut(s) 162
Hin1II CATG 3 cut(s) 121, 340, 452
HinfI GANTC 1 cut(s) 221
HphI GGTGA 1 cut(s) 370
Hpy188I TCNGA 3 cut(s) 51, 187, 198
Hpy188III TCNNGA 2 cut(s) 134, 348
HpyAV CCTTC 3 cut(s) 257, 385, 413
HpyCH4III ACNGT 2 cut(s) 155, 319
HpyCH4V TGCA 4 cut(s) 30, 92, 103, 208
Hsp92II CATG 3 cut(s) 121, 340, 452
Ksp22I TGATCA 2 cut(s) 120, 394
Kzo9I GATC 4 cut(s) 51, 65, 120, 394
LmnI GCTCC 1 cut(s) 173
LpnPI CCDG 6 cut(s) 26, 147, 236, 333, 383, 445
MaeI CTAG 3 cut(s) 362, 468, 477
MaeIII GTNAC 1 cut(s) 472
MalI GATC 4 cut(s) 53, 67, 122, 396
MboI GATC 4 cut(s) 51, 65, 120, 394
MboII GAAGA 5 cut(s) 27, 200, 216, 254, 435
MflI RGATCY 2 cut(s) 51, 65
MluCI AATT 5 cut(s) 87, 108, 200, 437, 462
MlyI GAGTC 1 cut(s) 230
MnlI CCTC 3 cut(s) 132, 164, 335
MroXI GAANNNNTTC 1 cut(s) 192
MseI TTAA 1 cut(s) 481
Mva1269I GAATGC 1 cut(s) 449
NdeII GATC 4 cut(s) 51, 65, 120, 394
NlaIII CATG 3 cut(s) 121, 340, 452
PctI GAATGC 1 cut(s) 449
PdmI GAANNNNTTC 1 cut(s) 192
PkrI GCNGC 1 cut(s) 456
PleI GAGTC 1 cut(s) 229
PpsI GAGTC 1 cut(s) 229
PsuI RGATCY 2 cut(s) 51, 65
SaqAI TTAA 1 cut(s) 481
SatI GCNGC 1 cut(s) 455
Sau3AI GATC 4 cut(s) 51, 65, 120, 394
SchI GAGTC 1 cut(s) 230
SetI ASST 3 cut(s) 47, 346, 377
SpeI ACTAGT 1 cut(s) 476
Sse9I AATT 5 cut(s) 87, 108, 200, 437, 462
SsiI CCGC 2 cut(s) 218, 455
SspMI CTAG 3 cut(s) 362, 468, 477
TaaI ACNGT 2 cut(s) 155, 319
TaqII GACCGA 1 cut(s) 32
TasI AATT 5 cut(s) 87, 108, 200, 437, 462
TauI GCSGC 1 cut(s) 457
Tru1I TTAA 1 cut(s) 481
Tru9I TTAA 1 cut(s) 481
TscAI CASTG 1 cut(s) 32
TspDTI ATGAA 3 cut(s) 216, 223, 399
TspRI CASTG 1 cut(s) 32
XapI RAATTY 1 cut(s) 437
XmnI GAANNNNTTC 1 cut(s) 192
XspI CTAG 3 cut(s) 362, 468, 477
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.