Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0016447

Physical Location & Seq

Genomic Coordinates Forward (+)

6450273 .. 6450635

Gene Structure 363 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ29061

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGATGATGCGTCACTGCCGCCTCCTCCTCCTCCTCTTCACCCCTTTCGTCGCTGCTGACAGACTCCGACGGGAGCTCGACGGTGATTGGGGCCCCATCGAAAATATCAACAAACCCTATCTGAAAGAGATCGCGGAGTTTGCAGTTTCTGAAATCAGCAAACAATCCCACAAGAAGTTGGTGTTCCAGAGCGTTCTCAAGGGTGAGAGTGCTGTGGCACGAGGAATGGATTATCGTCTTGACATTGAGGTCAAGGATGAGTCGTCGCCCTATTCCCCTACTACTGTCATATATAAATGTTCTGTCTTCGATGGTATCTTAGACGAGGGGATGAGATTTAAGGGTTGTGAGATCCTTTCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002020 GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005623 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009892 GO:0009987 GO:0010029 GO:0010030 GO:0010466 GO:0010605 GO:0010951 GO:0019222 GO:0019899 GO:0030162 GO:0030234 GO:0030312 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0033554 GO:0034605 GO:0043086 GO:0044092 GO:0044464 GO:0045861 GO:0048518 GO:0048519 GO:0048523 GO:0048580 GO:0048582 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051172 GO:0051239 GO:0051240 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051716 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0071944 GO:0080090 GO:0098772 GO:1900140 GO:2000026 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

ko04970 map04970

Pfam Domains

Protein Families

SQAPI

Protein Analysis

120

Amino Acids

13.73

Weight (kDa)

6.12

Isoelectric Point (pI)

53.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SQAPI	PF16845	33 - 89	9.3e-16	Aspartic acid proteinase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0016447)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0476921 RchiOBHm_Chr3g0476961 RchiOBHm_Chr5g0009751 RchiOBHm_Chr5g0009781
rosa_laevigata	RLG00000031698
rosa_roxburghii	Rroxscaffold_1G00066420 Rroxscaffold_1G00066470 Rroxscaffold_6G00404440
rosa_rugosa	Rorug03G0157700 Rorug04G0445600
rosa_samantha	Rh3AG207800 Rh3BG240500 Rh3BG240700 Rh3CG235300 Rh3DG234100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	248
AccII	CGCG	1 cut(s)	134
AciI	CCGC	2 cut(s)	19, 134
AclWI	GGATC	1 cut(s)	346
AluBI	AGCT	1 cut(s)	76
AluI	AGCT	1 cut(s)	76
Alw21I	GWGCWC	1 cut(s)	78
AlwI	GGATC	1 cut(s)	346
AlwNI	CAGNNNCTG	1 cut(s)	149
AoxI	GGCC	1 cut(s)	91
ApaI	GGGCCC	1 cut(s)	95
ApeKI	GCWGC	1 cut(s)	53
AspS9I	GGNCC	2 cut(s)	91, 92
AsuHPI	GGTGA	3 cut(s)	31, 95, 215
BaeGI	GKGCMC	1 cut(s)	95
BanII	GRGCYC	2 cut(s)	78, 95
BauI	CACGAG	1 cut(s)	219
BbsI	GAAGAC	1 cut(s)	298
Bbv12I	GWGCWC	1 cut(s)	78
BbvI	GCAGC	1 cut(s)	40
BccI	CCATC	2 cut(s)	104, 305
BisI	GCNGC	2 cut(s)	19, 54
BlsI	GCNGC	2 cut(s)	20, 55
BmgT120I	GGNCC	2 cut(s)	91, 92
BmiI	GGNNCC	3 cut(s)	92, 93, 94
BpiI	GAAGAC	1 cut(s)	298
BpuEI	CTTGAG	1 cut(s)	182
BseGI	GGATG	2 cut(s)	262, 336
BseRI	GAGGAG	4 cut(s)	14, 17, 20, 23
BseSI	GKGCMC	1 cut(s)	95
BseXI	GCAGC	1 cut(s)	40
Bsh1236I	CGCG	1 cut(s)	134
BshFI	GGCC	1 cut(s)	93
BsiHKAI	GWGCWC	1 cut(s)	78
BsnI	GGCC	1 cut(s)	93
Bsp120I	GGGCCC	1 cut(s)	91
Bsp1286I	GDGCHC	2 cut(s)	78, 95
Bsp143I	GATC	2 cut(s)	129, 351
BspACI	CCGC	2 cut(s)	19, 134
BspANI	GGCC	1 cut(s)	93
BspFNI	CGCG	1 cut(s)	134
BspLI	GGNNCC	3 cut(s)	92, 93, 94
BspPI	GGATC	1 cut(s)	346
BssMI	GATC	2 cut(s)	129, 351
BssSI	CACGAG	1 cut(s)	219
Bst2BI	CACGAG	1 cut(s)	219
Bst4CI	ACNGT	2 cut(s)	83, 286
Bst6I	CTCTTC	1 cut(s)	41
BstDEI	CTNAG	1 cut(s)	319
BstF5I	GGATG	2 cut(s)	262, 336
BstFNI	CGCG	1 cut(s)	134
BstKTI	GATC	2 cut(s)	132, 354
BstMBI	GATC	2 cut(s)	129, 351
BstMWI	GCNNNNNNNGC	1 cut(s)	140
BstSLI	GKGCMC	1 cut(s)	95
BstUI	CGCG	1 cut(s)	134
BstV1I	GCAGC	1 cut(s)	40
BstV2I	GAAGAC	1 cut(s)	298
BstX2I	RGATCY	1 cut(s)	351
BstYI	RGATCY	1 cut(s)	351
BsuRI	GGCC	1 cut(s)	93
BtsCI	GGATG	2 cut(s)	262, 336
BtsI	GCAGTG	1 cut(s)	13
BtsIMutI	CAGTG	1 cut(s)	13
CaiI	CAGNNNCTG	1 cut(s)	149
Cfr13I	GGNCC	2 cut(s)	91, 92
CviJI	RGCY	2 cut(s)	76, 93
CviKI_1	RGCY	2 cut(s)	76, 93
DdeI	CTNAG	1 cut(s)	319
DpnI	GATC	2 cut(s)	131, 353
DpnII	GATC	2 cut(s)	129, 351
DrdI	GACNNNNNNGTC	1 cut(s)	248
DseDI	GACNNNNNNGTC	1 cut(s)	248
Eam1104I	CTCTTC	1 cut(s)	41
EarI	CTCTTC	1 cut(s)	41
Ecl136II	GAGCTC	1 cut(s)	76
Eco24I	GRGCYC	2 cut(s)	78, 95
Eco53kI	GAGCTC	1 cut(s)	76
EcoICRI	GAGCTC	1 cut(s)	76
EcoO109I	RGGNCCY	2 cut(s)	91, 92
EcoT38I	GRGCYC	2 cut(s)	78, 95
FaiI	YATR	3 cut(s)	290, 292, 294
Fnu4HI	GCNGC	2 cut(s)	19, 54
FokI	GGATG	2 cut(s)	269, 343
FriOI	GRGCYC	2 cut(s)	78, 95
Fsp4HI	GCNGC	2 cut(s)	19, 54
GluI	GCNGC	2 cut(s)	19, 54
HaeIII	GGCC	1 cut(s)	93
HinfI	GANTC	2 cut(s)	63, 260
HphI	GGTGA	3 cut(s)	31, 95, 215
Hpy188I	TCNGA	3 cut(s)	68, 123, 151
Hpy188III	TCNNGA	2 cut(s)	187, 239
Hpy99I	CGWCG	4 cut(s)	53, 72, 83, 268
HpyCH4III	ACNGT	2 cut(s)	83, 286
HpyCH4V	TGCA	1 cut(s)	143
HpyF10VI	GCNNNNNNNGC	1 cut(s)	140
HpyF3I	CTNAG	1 cut(s)	319
Kzo9I	GATC	2 cut(s)	129, 351
LmnI	GCTCC	1 cut(s)	73
LpnPI	CCDG	1 cut(s)	200
Lsp1109I	GCAGC	1 cut(s)	40
MaeIII	GTNAC	1 cut(s)	11
MalI	GATC	2 cut(s)	131, 353
MboI	GATC	2 cut(s)	129, 351
MboII	GAAGA	2 cut(s)	28, 298
MflI	RGATCY	1 cut(s)	351
MhlI	GDGCHC	2 cut(s)	78, 95
MlyI	GAGTC	2 cut(s)	57, 269
MmeI	TCCRAC	1 cut(s)	91
MnlI	CCTC	8 cut(s)	32, 35, 38, 41, 44, 215, 241, 319
MseI	TTAA	1 cut(s)	339
MvnI	CGCG	1 cut(s)	134
MwoI	GCNNNNNNNGC	1 cut(s)	140
NdeII	GATC	2 cut(s)	129, 351
NlaIV	GGNNCC	3 cut(s)	92, 93, 94
NmuCI	GTSAC	1 cut(s)	11
PkrI	GCNGC	2 cut(s)	20, 55
PleI	GAGTC	2 cut(s)	57, 268
PpsI	GAGTC	2 cut(s)	57, 268
Psp124BI	GAGCTC	1 cut(s)	78
PspN4I	GGNNCC	3 cut(s)	92, 93, 94
PspOMI	GGGCCC	1 cut(s)	91
PspPI	GGNCC	2 cut(s)	91, 92
PstNI	CAGNNNCTG	1 cut(s)	149
PsuI	RGATCY	1 cut(s)	351
SacI	GAGCTC	1 cut(s)	78
SaqAI	TTAA	1 cut(s)	339
SatI	GCNGC	2 cut(s)	19, 54
Sau3AI	GATC	2 cut(s)	129, 351
Sau96I	GGNCC	2 cut(s)	91, 92
SchI	GAGTC	2 cut(s)	57, 269
SduI	GDGCHC	2 cut(s)	78, 95
SetI	ASST	2 cut(s)	78, 252
SmlI	CTYRAG	1 cut(s)	197
SmoI	CTYRAG	1 cut(s)	197
SsiI	CCGC	2 cut(s)	19, 134
SstI	GAGCTC	1 cut(s)	78
TaaI	ACNGT	2 cut(s)	83, 286
TaqI	TCGA	3 cut(s)	78, 99, 309
TauI	GCSGC	1 cut(s)	21
Tru1I	TTAA	1 cut(s)	339
Tru9I	TTAA	1 cut(s)	339
TscAI	CASTG	1 cut(s)	20
TseFI	GTSAC	1 cut(s)	11
TseI	GCWGC	1 cut(s)	53
Tsp45I	GTSAC	1 cut(s)	11
TspRI	CASTG	1 cut(s)	20

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.