RchiOBHm_Chr5g0009781

Belongs to the cystatin family. Phytocystatin subfamily

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Forward (+)
6471633 .. 6471989
357 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ29064

Sequence Viewer

Length: 357 bp
ATGATGCGTCACTGCCTCCTCCTCCTCCTCCTGTCCCCTTTTGTCGCTGCTGACCAACTCCGGCGACAGTTCGACGGTGGTTGGGGCCTCATCGAAAATATCAACAAACCCTATCTGAAAGAGATCGCGGAGTTTGCAGTTTCTGAAATCAGCAAACAATCCCACAAGAAGTTGGTGTTCCAGAGCGTTCTCAAGGGTGAGAGTCAAGTGGTAGGAGGAATTAATTATCTTCTTCACATTAGGGTCAAGGATGAGTCGTCGCCCTATTCCCCTACTACTTTCATATATAAATGTTCTGTCTTCGATGGTGTCTTAGAAGAGGGGATGAAATTTGAGGGTTGTGAGATCCTTTCGTAG

Protein Analysis

118

Amino Acids

13.36

Weight (kDa)

6.28

Isoelectric Point (pI)

72.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cystatin PF00031 29 - 87 1.4e-08 Cystatin domain
SQAPI PF16845 31 - 87 2.4e-17 Aspartic acid proteinase inhibitor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 128
AciI CCGC 1 cut(s) 128
AclWI GGATC 1 cut(s) 340
AcsI RAATTY 1 cut(s) 329
AlwI GGATC 1 cut(s) 340
AlwNI CAGNNNCTG 1 cut(s) 143
AoxI GGCC 1 cut(s) 85
ApeKI GCWGC 1 cut(s) 47
ApoI RAATTY 1 cut(s) 329
AseI ATTAAT 1 cut(s) 222
AspS9I GGNCC 1 cut(s) 85
AsuHPI GGTGA 1 cut(s) 209
BbsI GAAGAC 1 cut(s) 292
BbvI GCAGC 1 cut(s) 34
BccI CCATC 1 cut(s) 299
BisI GCNGC 1 cut(s) 48
BlsI GCNGC 1 cut(s) 49
BmgT120I GGNCC 1 cut(s) 85
BmiI GGNNCC 1 cut(s) 86
BpiI GAAGAC 1 cut(s) 292
BpuEI CTTGAG 1 cut(s) 176
BseGI GGATG 2 cut(s) 256, 330
BseRI GAGGAG 4 cut(s) 8, 11, 14, 17
BseXI GCAGC 1 cut(s) 34
Bsh1236I CGCG 1 cut(s) 128
BshFI GGCC 1 cut(s) 87
BsiSI CCGG 1 cut(s) 61
BslFI GGGAC 1 cut(s) 19
BsmFI GGGAC 1 cut(s) 19
BsnI GGCC 1 cut(s) 87
Bsp143I GATC 2 cut(s) 123, 345
BspACI CCGC 1 cut(s) 128
BspANI GGCC 1 cut(s) 87
BspFNI CGCG 1 cut(s) 128
BspLI GGNNCC 1 cut(s) 86
BspPI GGATC 1 cut(s) 340
BssMI GATC 2 cut(s) 123, 345
Bst4CI ACNGT 2 cut(s) 69, 77
Bst6I CTCTTC 1 cut(s) 312
BstDEI CTNAG 1 cut(s) 313
BstF5I GGATG 2 cut(s) 256, 330
BstFNI CGCG 1 cut(s) 128
BstKTI GATC 2 cut(s) 126, 348
BstMBI GATC 2 cut(s) 123, 345
BstMWI GCNNNNNNNGC 1 cut(s) 134
BstUI CGCG 1 cut(s) 128
BstV1I GCAGC 1 cut(s) 34
BstV2I GAAGAC 1 cut(s) 292
BstX2I RGATCY 1 cut(s) 345
BstYI RGATCY 1 cut(s) 345
BsuRI GGCC 1 cut(s) 87
BtsCI GGATG 2 cut(s) 256, 330
BtsI GCAGTG 1 cut(s) 10
BtsIMutI CAGTG 1 cut(s) 10
CaiI CAGNNNCTG 1 cut(s) 143
Cfr13I GGNCC 1 cut(s) 85
CviJI RGCY 1 cut(s) 87
CviKI_1 RGCY 1 cut(s) 87
DdeI CTNAG 1 cut(s) 313
DpnI GATC 2 cut(s) 125, 347
DpnII GATC 2 cut(s) 123, 345
Eam1104I CTCTTC 1 cut(s) 312
EarI CTCTTC 1 cut(s) 312
EcoO109I RGGNCCY 1 cut(s) 85
FaiI YATR 3 cut(s) 284, 286, 288
FaqI GGGAC 1 cut(s) 19
Fnu4HI GCNGC 1 cut(s) 48
FokI GGATG 2 cut(s) 263, 337
Fsp4HI GCNGC 1 cut(s) 48
GluI GCNGC 1 cut(s) 48
HaeIII GGCC 1 cut(s) 87
HapII CCGG 1 cut(s) 61
HinfI GANTC 2 cut(s) 202, 254
HpaII CCGG 1 cut(s) 61
HphI GGTGA 1 cut(s) 209
Hpy188I TCNGA 2 cut(s) 117, 145
Hpy188III TCNNGA 1 cut(s) 181
Hpy99I CGWCG 2 cut(s) 77, 262
HpyCH4III ACNGT 2 cut(s) 69, 77
HpyCH4V TGCA 1 cut(s) 137
HpyF10VI GCNNNNNNNGC 1 cut(s) 134
HpyF3I CTNAG 1 cut(s) 313
Kzo9I GATC 2 cut(s) 123, 345
LpnPI CCDG 3 cut(s) 44, 74, 194
Lsp1109I GCAGC 1 cut(s) 34
MaeIII GTNAC 1 cut(s) 8
MalI GATC 2 cut(s) 125, 347
MboI GATC 2 cut(s) 123, 345
MboII GAAGA 4 cut(s) 221, 224, 292, 329
MflI RGATCY 1 cut(s) 345
MluCI AATT 3 cut(s) 219, 223, 329
MlyI GAGTC 2 cut(s) 211, 263
MnlI CCTC 9 cut(s) 26, 29, 32, 35, 38, 98, 209, 313, 328
MseI TTAA 1 cut(s) 222
MspI CCGG 1 cut(s) 61
MvnI CGCG 1 cut(s) 128
MwoI GCNNNNNNNGC 1 cut(s) 134
NdeII GATC 2 cut(s) 123, 345
NlaIV GGNNCC 1 cut(s) 86
NmuCI GTSAC 1 cut(s) 8
PkrI GCNGC 1 cut(s) 49
PleI GAGTC 2 cut(s) 210, 262
PpsI GAGTC 2 cut(s) 210, 262
PshBI ATTAAT 1 cut(s) 222
PspN4I GGNNCC 1 cut(s) 86
PspPI GGNCC 1 cut(s) 85
PstNI CAGNNNCTG 1 cut(s) 143
PsuI RGATCY 1 cut(s) 345
SaqAI TTAA 1 cut(s) 222
SatI GCNGC 1 cut(s) 48
Sau3AI GATC 2 cut(s) 123, 345
Sau96I GGNCC 1 cut(s) 85
SchI GAGTC 2 cut(s) 211, 263
SgeI CNNG 8 cut(s) 43, 73, 139, 178, 193, 205, 218, 259
SmlI CTYRAG 1 cut(s) 191
SmoI CTYRAG 1 cut(s) 191
Sse9I AATT 3 cut(s) 219, 223, 329
SsiI CCGC 1 cut(s) 128
TaaI ACNGT 2 cut(s) 69, 77
TaqI TCGA 3 cut(s) 72, 93, 303
TasI AATT 3 cut(s) 219, 223, 329
Tru1I TTAA 1 cut(s) 222
Tru9I TTAA 1 cut(s) 222
TscAI CASTG 1 cut(s) 17
TseFI GTSAC 1 cut(s) 8
TseI GCWGC 1 cut(s) 47
Tsp45I GTSAC 1 cut(s) 8
TspDTI ATGAA 2 cut(s) 271, 341
TspRI CASTG 1 cut(s) 17
VspI ATTAAT 1 cut(s) 222
XapI RAATTY 1 cut(s) 329
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.