Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0016447

Physical Location & Seq

Genomic Coordinates Forward (+)

20819881 .. 20820647

Gene Structure 767 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG207800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGCGTCACTGCCTTCTCCTCCTCCTCCTCTCCCATTTCATCGCTGCTGACCAACTCTGGCTCTCCGGTGGCTGGGGTCCCATCGGAGATCTCAACAAACCCTATCTGAAAGAGATCGCGGAGTTTGCAGTTTCTGAAATCAGCAAACAATCCCGCAAGAAGTTGGTATTCCAGAGCGTTCTCAAGGGTGAGCGTCAAGTAGTACGAGGATTCAATTATCTTCTTGACATTGAGGTCAAGGATGAGTCGTCGCCCCATTCCTCTAGTACTGTCATATATAAATGTTCTGTCTTCAGTGGTATCTTAGACGAGGGGATGAAATTCAAGGGTTGTGAGATCCTTTCTGGTAGGGTGGATGTCAATTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002020 GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005623 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009892 GO:0009987 GO:0010029 GO:0010030 GO:0010466 GO:0010605 GO:0010951 GO:0019222 GO:0019899 GO:0030162 GO:0030234 GO:0030312 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0033554 GO:0034605 GO:0043086 GO:0044092 GO:0044464 GO:0045861 GO:0048518 GO:0048519 GO:0048523 GO:0048580 GO:0048582 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051172 GO:0051239 GO:0051240 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051716 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0071944 GO:0080090 GO:0098772 GO:1900140 GO:2000026 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

ko04970 map04970

Pfam Domains

Protein Families

SQAPI

Protein Analysis

122

Amino Acids

13.71

Weight (kDa)

7.72

Isoelectric Point (pI)

41.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cystatin	PF00031	23 - 97	2.9e-09	Cystatin domain
SQAPI	PF16845	28 - 86	1.5e-16	Aspartic acid proteinase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0016447)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0476921 RchiOBHm_Chr3g0476961 RchiOBHm_Chr5g0009751 RchiOBHm_Chr5g0009781
rosa_laevigata	RLG00000031698
rosa_roxburghii	Rroxscaffold_1G00066420 Rroxscaffold_1G00066470 Rroxscaffold_6G00404440
rosa_rugosa	Rorug03G0157700 Rorug04G0445600
rosa_samantha	Rh3AG207800 Rh3BG240500 Rh3BG240700 Rh3CG235300 Rh3DG234100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	233
AccII	CGCG	1 cut(s)	119
AciI	CCGC	2 cut(s)	119, 154
AclWI	GGATC	1 cut(s)	331
AcsI	RAATTY	1 cut(s)	320
AcuI	CTGAAG	1 cut(s)	277
AfaI	GTAC	2 cut(s)	204, 268
AfiI	CCNNNNNNNGG	1 cut(s)	72
AgsI	TTSAA	2 cut(s)	214, 325
AlwI	GGATC	1 cut(s)	331
AlwNI	CAGNNNCTG	1 cut(s)	134
ApeKI	GCWGC	1 cut(s)	44
ApoI	RAATTY	1 cut(s)	320
AspS9I	GGNCC	1 cut(s)	77
AsuHPI	GGTGA	1 cut(s)	200
AvaII	GGWCC	1 cut(s)	77
BbsI	GAAGAC	1 cut(s)	283
BbvI	GCAGC	1 cut(s)	31
BccI	CCATC	1 cut(s)	89
BfaI	CTAG	2 cut(s)	264, 367
BglII	AGATCT	1 cut(s)	88
BisI	GCNGC	1 cut(s)	45
BlsI	GCNGC	1 cut(s)	46
BmcAI	AGTACT	1 cut(s)	268
Bme18I	GGWCC	1 cut(s)	77
BmgT120I	GGNCC	1 cut(s)	77
BmiI	GGNNCC	2 cut(s)	78, 79
BpiI	GAAGAC	1 cut(s)	283
BpuEI	CTTGAG	1 cut(s)	167
BsaWI	WCCGGW	1 cut(s)	65
Bsc4I	CCNNNNNNNGG	1 cut(s)	72
BseGI	GGATG	3 cut(s)	247, 321, 361
BseLI	CCNNNNNNNGG	1 cut(s)	72
BseRI	GAGGAG	4 cut(s)	8, 11, 14, 17
BseXI	GCAGC	1 cut(s)	31
BseYI	CCCAGC	1 cut(s)	72
Bsh1236I	CGCG	1 cut(s)	119
BsiSI	CCGG	1 cut(s)	66
BslFI	GGGAC	1 cut(s)	63
BslI	CCNNNNNNNGG	1 cut(s)	72
BsmFI	GGGAC	1 cut(s)	63
Bsp143I	GATC	3 cut(s)	88, 114, 336
BspACI	CCGC	2 cut(s)	119, 154
BspFNI	CGCG	1 cut(s)	119
BspLI	GGNNCC	2 cut(s)	78, 79
BspPI	GGATC	1 cut(s)	331
BssMI	GATC	3 cut(s)	88, 114, 336
Bst4CI	ACNGT	1 cut(s)	271
BstDEI	CTNAG	1 cut(s)	304
BstF5I	GGATG	3 cut(s)	247, 321, 361
BstFNI	CGCG	1 cut(s)	119
BstKTI	GATC	3 cut(s)	91, 117, 339
BstMBI	GATC	3 cut(s)	88, 114, 336
BstMWI	GCNNNNNNNGC	1 cut(s)	125
BstUI	CGCG	1 cut(s)	119
BstV1I	GCAGC	1 cut(s)	31
BstV2I	GAAGAC	1 cut(s)	283
BstX2I	RGATCY	2 cut(s)	88, 336
BstYI	RGATCY	2 cut(s)	88, 336
BtgZI	GCGATG	1 cut(s)	25
BtsCI	GGATG	3 cut(s)	247, 321, 361
BtsI	GCAGTG	1 cut(s)	7
BtsIMutI	CAGTG	2 cut(s)	7, 301
CaiI	CAGNNNCTG	1 cut(s)	134
Cfr13I	GGNCC	1 cut(s)	77
CseI	GACGC	1 cut(s)	182
Csp6I	GTAC	2 cut(s)	203, 267
CviJI	RGCY	2 cut(s)	61, 72
CviKI_1	RGCY	2 cut(s)	61, 72
CviQI	GTAC	2 cut(s)	203, 267
DdeI	CTNAG	1 cut(s)	304
DpnI	GATC	3 cut(s)	90, 116, 338
DpnII	GATC	3 cut(s)	88, 114, 336
DrdI	GACNNNNNNGTC	1 cut(s)	233
DseDI	GACNNNNNNGTC	1 cut(s)	233
Eco47I	GGWCC	1 cut(s)	77
Eco57I	CTGAAG	1 cut(s)	277
EcoO109I	RGGNCCY	1 cut(s)	77
FaiI	YATR	3 cut(s)	275, 277, 279
FaqI	GGGAC	1 cut(s)	63
FauI	CCCGC	1 cut(s)	161
Fnu4HI	GCNGC	1 cut(s)	45
FokI	GGATG	2 cut(s)	254, 328
Fsp4HI	GCNGC	1 cut(s)	45
FspBI	CTAG	2 cut(s)	264, 367
GluI	GCNGC	1 cut(s)	45
GsaI	CCCAGC	1 cut(s)	76
HapII	CCGG	1 cut(s)	66
HgaI	GACGC	1 cut(s)	182
HinfI	GANTC	2 cut(s)	210, 245
HpaII	CCGG	1 cut(s)	66
HphI	GGTGA	1 cut(s)	200
Hpy188I	TCNGA	3 cut(s)	86, 108, 136
Hpy188III	TCNNGA	2 cut(s)	172, 224
Hpy99I	CGWCG	1 cut(s)	253
HpyAV	CCTTC	1 cut(s)	23
HpyCH4III	ACNGT	1 cut(s)	271
HpyCH4V	TGCA	1 cut(s)	128
HpyF10VI	GCNNNNNNNGC	1 cut(s)	125
HpyF3I	CTNAG	1 cut(s)	304
KflI	GGGWCCC	1 cut(s)	77
Kzo9I	GATC	3 cut(s)	88, 114, 336
LpnPI	CCDG	5 cut(s)	43, 58, 79, 185, 330
Lsp1109I	GCAGC	1 cut(s)	31
MaeI	CTAG	2 cut(s)	264, 367
MaeIII	GTNAC	1 cut(s)	5
MalI	GATC	3 cut(s)	90, 116, 338
MboI	GATC	3 cut(s)	88, 114, 336
MboII	GAAGA	2 cut(s)	212, 283
MflI	RGATCY	2 cut(s)	88, 336
MluCI	AATT	3 cut(s)	214, 320, 361
MlyI	GAGTC	1 cut(s)	254
MnlI	CCTC	8 cut(s)	29, 32, 35, 38, 200, 226, 271, 304
MspI	CCGG	1 cut(s)	66
MvnI	CGCG	1 cut(s)	119
MwoI	GCNNNNNNNGC	1 cut(s)	125
NdeII	GATC	3 cut(s)	88, 114, 336
NlaIV	GGNNCC	2 cut(s)	78, 79
NmuCI	GTSAC	1 cut(s)	5
PfeI	GAWTC	1 cut(s)	210
PkrI	GCNGC	1 cut(s)	46
PleI	GAGTC	1 cut(s)	253
PpsI	GAGTC	1 cut(s)	253
PpuMI	RGGWCCY	1 cut(s)	77
Psp5II	RGGWCCY	1 cut(s)	77
PspFI	CCCAGC	1 cut(s)	72
PspN4I	GGNNCC	2 cut(s)	78, 79
PspPI	GGNCC	1 cut(s)	77
PspPPI	RGGWCCY	1 cut(s)	77
PstNI	CAGNNNCTG	1 cut(s)	134
PsuI	RGATCY	2 cut(s)	88, 336
RsaI	GTAC	2 cut(s)	204, 268
RsaNI	GTAC	2 cut(s)	203, 267
SatI	GCNGC	1 cut(s)	45
Sau3AI	GATC	3 cut(s)	88, 114, 336
Sau96I	GGNCC	1 cut(s)	77
ScaI	AGTACT	1 cut(s)	268
SchI	GAGTC	1 cut(s)	254
SetI	ASST	1 cut(s)	237
SinI	GGWCC	1 cut(s)	77
SmlI	CTYRAG	1 cut(s)	182
SmoI	CTYRAG	1 cut(s)	182
Sse9I	AATT	3 cut(s)	214, 320, 361
SsiI	CCGC	2 cut(s)	119, 154
SspMI	CTAG	2 cut(s)	264, 367
TaaI	ACNGT	1 cut(s)	271
TasI	AATT	3 cut(s)	214, 320, 361
TatI	WGTACW	1 cut(s)	266
TfiI	GAWTC	1 cut(s)	210
TscAI	CASTG	2 cut(s)	14, 301
TseFI	GTSAC	1 cut(s)	5
TseI	GCWGC	1 cut(s)	44
Tsp45I	GTSAC	1 cut(s)	5
TspDTI	ATGAA	2 cut(s)	28, 332
TspRI	CASTG	2 cut(s)	14, 301
VpaK11BI	GGWCC	1 cut(s)	77
XapI	RAATTY	1 cut(s)	320
XspI	CTAG	2 cut(s)	264, 367
ZrmI	AGTACT	1 cut(s)	268

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.