Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0016447

Physical Location & Seq

Genomic Coordinates Reverse (-)

26945336 .. 26945707

Gene Structure 372 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00404440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGATGCGTCACTGCCTTCTCCTCCTCCTCCTCTCCCATTTCATCGCTGCTGACCAACTCTGGCTCTCCGGTGGCTGGGGTCCCATCCGAAATCTCAACAAACCCTATCTGAAAGAGATCGCGGAGTTTGCAGTTTCTGAAATCAGCAAACAATCCCACAAGAAGTTGGTATTCCAGAGCGTTCTCAAGGGTGAGAGTCAAGTGGTACGAGGATTCAATTATCTTCTTGACATTGAGGTCAAGGATGAGTCGTCGCCCCATTCCCCTAGTACTGTCATATATAAATGTTCTGTCTTCAGTGGTATCTTAGACGAGGGGATGAAATTCAAGGGATGTGAGGTCCTTTCTGGTAGGGTGGATGTCAATTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002020 GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005623 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009892 GO:0009987 GO:0010029 GO:0010030 GO:0010466 GO:0010605 GO:0010951 GO:0019222 GO:0019899 GO:0030162 GO:0030234 GO:0030312 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0033554 GO:0034605 GO:0043086 GO:0044092 GO:0044464 GO:0045861 GO:0048518 GO:0048519 GO:0048523 GO:0048580 GO:0048582 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051172 GO:0051239 GO:0051240 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051716 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0071944 GO:0080090 GO:0098772 GO:1900140 GO:2000026 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

ko04970 map04970

Pfam Domains

Protein Families

SQAPI

Protein Analysis

123

Amino Acids

13.84

Weight (kDa)

7.74

Isoelectric Point (pI)

42.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cystatin	PF00031	24 - 97	2.3e-09	Cystatin domain
SQAPI	PF16845	29 - 86	6e-17	Aspartic acid proteinase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016447)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0476921 RchiOBHm_Chr3g0476961 RchiOBHm_Chr5g0009751 RchiOBHm_Chr5g0009781
rosa_laevigata	RLG00000031698
rosa_roxburghii	Rroxscaffold_1G00066420 Rroxscaffold_1G00066470 Rroxscaffold_6G00404440
rosa_rugosa	Rorug03G0157700 Rorug04G0445600
rosa_samantha	Rh3AG207800 Rh3BG240500 Rh3BG240700 Rh3CG235300 Rh3DG234100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	236
AccII	CGCG	1 cut(s)	122
AciI	CCGC	1 cut(s)	122
AcsI	RAATTY	1 cut(s)	323
AcuI	CTGAAG	1 cut(s)	280
AfaI	GTAC	2 cut(s)	207, 271
AfiI	CCNNNNNNNGG	1 cut(s)	75
AgsI	TTSAA	2 cut(s)	217, 328
AlwNI	CAGNNNCTG	1 cut(s)	137
ApeKI	GCWGC	1 cut(s)	47
ApoI	RAATTY	1 cut(s)	323
AspS9I	GGNCC	2 cut(s)	80, 340
AsuHPI	GGTGA	1 cut(s)	203
AvaII	GGWCC	2 cut(s)	80, 340
BbsI	GAAGAC	1 cut(s)	286
BbvI	GCAGC	1 cut(s)	34
BccI	CCATC	1 cut(s)	92
BfaI	CTAG	2 cut(s)	267, 370
BisI	GCNGC	1 cut(s)	48
BlsI	GCNGC	1 cut(s)	49
BmcAI	AGTACT	1 cut(s)	271
Bme18I	GGWCC	2 cut(s)	80, 340
BmgT120I	GGNCC	2 cut(s)	80, 340
BmiI	GGNNCC	2 cut(s)	81, 82
BpiI	GAAGAC	1 cut(s)	286
BpuEI	CTTGAG	1 cut(s)	170
BsaWI	WCCGGW	1 cut(s)	68
Bsc4I	CCNNNNNNNGG	1 cut(s)	75
BseGI	GGATG	5 cut(s)	84, 250, 324, 338, 364
BseLI	CCNNNNNNNGG	1 cut(s)	75
BseRI	GAGGAG	4 cut(s)	11, 14, 17, 20
BseXI	GCAGC	1 cut(s)	34
BseYI	CCCAGC	1 cut(s)	75
Bsh1236I	CGCG	1 cut(s)	122
BsiSI	CCGG	1 cut(s)	69
BslFI	GGGAC	1 cut(s)	66
BslI	CCNNNNNNNGG	1 cut(s)	75
BsmFI	GGGAC	1 cut(s)	66
Bsp143I	GATC	1 cut(s)	117
BspACI	CCGC	1 cut(s)	122
BspFNI	CGCG	1 cut(s)	122
BspLI	GGNNCC	2 cut(s)	81, 82
BssMI	GATC	1 cut(s)	117
Bst4CI	ACNGT	1 cut(s)	274
BstDEI	CTNAG	1 cut(s)	307
BstF5I	GGATG	5 cut(s)	84, 250, 324, 338, 364
BstFNI	CGCG	1 cut(s)	122
BstKTI	GATC	1 cut(s)	120
BstMBI	GATC	1 cut(s)	117
BstMWI	GCNNNNNNNGC	1 cut(s)	128
BstUI	CGCG	1 cut(s)	122
BstV1I	GCAGC	1 cut(s)	34
BstV2I	GAAGAC	1 cut(s)	286
BtgZI	GCGATG	1 cut(s)	28
BtsCI	GGATG	5 cut(s)	84, 250, 324, 338, 364
BtsI	GCAGTG	1 cut(s)	10
BtsIMutI	CAGTG	2 cut(s)	10, 304
CaiI	CAGNNNCTG	1 cut(s)	137
Cfr13I	GGNCC	2 cut(s)	80, 340
Csp6I	GTAC	2 cut(s)	206, 270
CviJI	RGCY	2 cut(s)	64, 75
CviKI_1	RGCY	2 cut(s)	64, 75
CviQI	GTAC	2 cut(s)	206, 270
DdeI	CTNAG	1 cut(s)	307
DpnI	GATC	1 cut(s)	119
DpnII	GATC	1 cut(s)	117
DrdI	GACNNNNNNGTC	1 cut(s)	236
DseDI	GACNNNNNNGTC	1 cut(s)	236
Eco47I	GGWCC	2 cut(s)	80, 340
Eco57I	CTGAAG	1 cut(s)	280
EcoO109I	RGGNCCY	2 cut(s)	80, 340
FaiI	YATR	3 cut(s)	278, 280, 282
FaqI	GGGAC	1 cut(s)	66
Fnu4HI	GCNGC	1 cut(s)	48
FokI	GGATG	4 cut(s)	71, 257, 331, 345
Fsp4HI	GCNGC	1 cut(s)	48
FspBI	CTAG	2 cut(s)	267, 370
GluI	GCNGC	1 cut(s)	48
GsaI	CCCAGC	1 cut(s)	79
HapII	CCGG	1 cut(s)	69
HinfI	GANTC	3 cut(s)	196, 213, 248
HpaII	CCGG	1 cut(s)	69
HphI	GGTGA	1 cut(s)	203
Hpy188I	TCNGA	3 cut(s)	89, 111, 139
Hpy188III	TCNNGA	2 cut(s)	175, 227
Hpy99I	CGWCG	1 cut(s)	256
HpyAV	CCTTC	1 cut(s)	26
HpyCH4III	ACNGT	1 cut(s)	274
HpyCH4V	TGCA	1 cut(s)	131
HpyF10VI	GCNNNNNNNGC	1 cut(s)	128
HpyF3I	CTNAG	1 cut(s)	307
KflI	GGGWCCC	1 cut(s)	80
Kzo9I	GATC	1 cut(s)	117
LpnPI	CCDG	5 cut(s)	46, 61, 82, 188, 333
Lsp1109I	GCAGC	1 cut(s)	34
MaeI	CTAG	2 cut(s)	267, 370
MaeIII	GTNAC	1 cut(s)	8
MalI	GATC	1 cut(s)	119
MboI	GATC	1 cut(s)	117
MboII	GAAGA	2 cut(s)	215, 286
MluCI	AATT	3 cut(s)	217, 323, 364
MlyI	GAGTC	2 cut(s)	205, 257
MnlI	CCTC	8 cut(s)	32, 35, 38, 41, 203, 229, 307, 331
MspI	CCGG	1 cut(s)	69
MvnI	CGCG	1 cut(s)	122
MwoI	GCNNNNNNNGC	1 cut(s)	128
NdeII	GATC	1 cut(s)	117
NlaIV	GGNNCC	2 cut(s)	81, 82
NmuCI	GTSAC	1 cut(s)	8
PfeI	GAWTC	1 cut(s)	213
PkrI	GCNGC	1 cut(s)	49
PleI	GAGTC	2 cut(s)	204, 256
PpsI	GAGTC	2 cut(s)	204, 256
PpuMI	RGGWCCY	2 cut(s)	80, 340
Psp5II	RGGWCCY	2 cut(s)	80, 340
PspFI	CCCAGC	1 cut(s)	75
PspN4I	GGNNCC	2 cut(s)	81, 82
PspPI	GGNCC	2 cut(s)	80, 340
PspPPI	RGGWCCY	2 cut(s)	80, 340
PstNI	CAGNNNCTG	1 cut(s)	137
RsaI	GTAC	2 cut(s)	207, 271
RsaNI	GTAC	2 cut(s)	206, 270
SatI	GCNGC	1 cut(s)	48
Sau3AI	GATC	1 cut(s)	117
Sau96I	GGNCC	2 cut(s)	80, 340
ScaI	AGTACT	1 cut(s)	271
SchI	GAGTC	2 cut(s)	205, 257
SetI	ASST	2 cut(s)	240, 342
SinI	GGWCC	2 cut(s)	80, 340
SmlI	CTYRAG	1 cut(s)	185
SmoI	CTYRAG	1 cut(s)	185
Sse9I	AATT	3 cut(s)	217, 323, 364
SsiI	CCGC	1 cut(s)	122
SspMI	CTAG	2 cut(s)	267, 370
TaaI	ACNGT	1 cut(s)	274
TasI	AATT	3 cut(s)	217, 323, 364
TatI	WGTACW	1 cut(s)	269
TfiI	GAWTC	1 cut(s)	213
TscAI	CASTG	2 cut(s)	17, 304
TseFI	GTSAC	1 cut(s)	8
TseI	GCWGC	1 cut(s)	47
Tsp45I	GTSAC	1 cut(s)	8
TspDTI	ATGAA	2 cut(s)	31, 335
TspRI	CASTG	2 cut(s)	17, 304
VpaK11BI	GGWCC	2 cut(s)	80, 340
XapI	RAATTY	1 cut(s)	323
XspI	CTAG	2 cut(s)	267, 370
ZrmI	AGTACT	1 cut(s)	271

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.