Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0016447

Physical Location & Seq

Genomic Coordinates Reverse (-)

88000534 .. 88000893

Gene Structure 360 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00066470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGATGCGTCACTGCCGCCTCCTCCTCCTCCTCCTCTCCCCTTTCGTCGCTGCCGGCAAACTCCGGCGGGAGTTCGACGGTGATTGGAGCCCCATCGAAAATATCAACAAACCCTATCTGAAAGAGATCGCGGACTTTGCAGTTTCTGAAATCCGCAAACAATCCCACAAGAAGTTGGTGTTCCAGAGCGTTCTCAAGGGTGAGAGTGCTGTGGCACGAGGAATGGATTATCGTCTTGACATTGAGGTCAAGGATGAGTCGTCGCCCTATTCCCCTACTACTATCATATATAAATGTTCTGTGTTTGATGGTATCTTAGACAAGTGGATGACATTTAAGGGTTGTGAGATCCTTTCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002020 GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005623 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009892 GO:0009987 GO:0010029 GO:0010030 GO:0010466 GO:0010605 GO:0010951 GO:0019222 GO:0019899 GO:0030162 GO:0030234 GO:0030312 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0033554 GO:0034605 GO:0043086 GO:0044092 GO:0044464 GO:0045861 GO:0048518 GO:0048519 GO:0048523 GO:0048580 GO:0048582 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051172 GO:0051239 GO:0051240 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051716 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0071944 GO:0080090 GO:0098772 GO:1900140 GO:2000026 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

ko04970 map04970

Pfam Domains

Protein Families

SQAPI

Protein Analysis

119

Amino Acids

13.67

Weight (kDa)

8.44

Isoelectric Point (pI)

64.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cystatin	PF00031	30 - 114	7.9e-07	Cystatin domain
SQAPI	PF16845	32 - 89	2.1e-15	Aspartic acid proteinase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0016447)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0476921 RchiOBHm_Chr3g0476961 RchiOBHm_Chr5g0009751 RchiOBHm_Chr5g0009781
rosa_laevigata	RLG00000031698
rosa_roxburghii	Rroxscaffold_1G00066420 Rroxscaffold_1G00066470 Rroxscaffold_6G00404440
rosa_rugosa	Rorug03G0157700 Rorug04G0445600
rosa_samantha	Rh3AG207800 Rh3BG240500 Rh3BG240700 Rh3CG235300 Rh3DG234100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	245
AccII	CGCG	1 cut(s)	131
AciI	CCGC	4 cut(s)	16, 67, 131, 154
AclWI	GGATC	1 cut(s)	343
AlwI	GGATC	1 cut(s)	343
AlwNI	CAGNNNCTG	1 cut(s)	146
ApeKI	GCWGC	1 cut(s)	50
AsuHPI	GGTGA	2 cut(s)	92, 212
BanII	GRGCYC	1 cut(s)	92
BauI	CACGAG	1 cut(s)	216
BbvI	GCAGC	1 cut(s)	37
BccI	CCATC	2 cut(s)	101, 302
BisI	GCNGC	2 cut(s)	16, 51
BlsI	GCNGC	2 cut(s)	17, 52
BmiI	GGNNCC	1 cut(s)	89
BpuEI	CTTGAG	1 cut(s)	179
Bse118I	RCCGGY	1 cut(s)	53
BseGI	GGATG	2 cut(s)	259, 333
BseRI	GAGGAG	5 cut(s)	11, 14, 17, 20, 23
BseXI	GCAGC	1 cut(s)	37
Bsh1236I	CGCG	1 cut(s)	131
BsiSI	CCGG	2 cut(s)	54, 64
Bsp1286I	GDGCHC	1 cut(s)	92
Bsp143I	GATC	2 cut(s)	126, 348
BspACI	CCGC	4 cut(s)	16, 67, 131, 154
BspFNI	CGCG	1 cut(s)	131
BspLI	GGNNCC	1 cut(s)	89
BspPI	GGATC	1 cut(s)	343
BsrFI	RCCGGY	1 cut(s)	53
BssAI	RCCGGY	1 cut(s)	53
BssMI	GATC	2 cut(s)	126, 348
BssSI	CACGAG	1 cut(s)	216
Bst2BI	CACGAG	1 cut(s)	216
Bst4CI	ACNGT	1 cut(s)	80
BstC8I	GCNNGC	1 cut(s)	55
BstDEI	CTNAG	1 cut(s)	316
BstF5I	GGATG	2 cut(s)	259, 333
BstFNI	CGCG	1 cut(s)	131
BstKTI	GATC	2 cut(s)	129, 351
BstMBI	GATC	2 cut(s)	126, 348
BstMWI	GCNNNNNNNGC	1 cut(s)	137
BstUI	CGCG	1 cut(s)	131
BstV1I	GCAGC	1 cut(s)	37
BstX2I	RGATCY	1 cut(s)	348
BstYI	RGATCY	1 cut(s)	348
BtsCI	GGATG	2 cut(s)	259, 333
BtsI	GCAGTG	1 cut(s)	10
BtsIMutI	CAGTG	1 cut(s)	10
Cac8I	GCNNGC	1 cut(s)	55
CaiI	CAGNNNCTG	1 cut(s)	146
Cfr10I	RCCGGY	1 cut(s)	53
CviJI	RGCY	1 cut(s)	90
CviKI_1	RGCY	1 cut(s)	90
DdeI	CTNAG	1 cut(s)	316
DpnI	GATC	2 cut(s)	128, 350
DpnII	GATC	2 cut(s)	126, 348
DrdI	GACNNNNNNGTC	1 cut(s)	245
DseDI	GACNNNNNNGTC	1 cut(s)	245
Eco24I	GRGCYC	1 cut(s)	92
EcoT38I	GRGCYC	1 cut(s)	92
FaiI	YATR	3 cut(s)	287, 289, 291
FauI	CCCGC	1 cut(s)	60
Fnu4HI	GCNGC	2 cut(s)	16, 51
FokI	GGATG	2 cut(s)	266, 340
FriOI	GRGCYC	1 cut(s)	92
Fsp4HI	GCNGC	2 cut(s)	16, 51
GluI	GCNGC	2 cut(s)	16, 51
HapII	CCGG	2 cut(s)	54, 64
HinfI	GANTC	1 cut(s)	257
HpaII	CCGG	2 cut(s)	54, 64
HphI	GGTGA	2 cut(s)	92, 212
Hpy188I	TCNGA	2 cut(s)	120, 148
Hpy188III	TCNNGA	2 cut(s)	184, 236
Hpy99I	CGWCG	3 cut(s)	50, 80, 265
HpyCH4III	ACNGT	1 cut(s)	80
HpyCH4V	TGCA	1 cut(s)	140
HpyF10VI	GCNNNNNNNGC	1 cut(s)	137
HpyF3I	CTNAG	1 cut(s)	316
KroI	GCCGGC	1 cut(s)	53
KroNI	GCCGGC	1 cut(s)	55
Kzo9I	GATC	2 cut(s)	126, 348
LmnI	GCTCC	1 cut(s)	87
LpnPI	CCDG	3 cut(s)	67, 77, 197
Lsp1109I	GCAGC	1 cut(s)	37
MaeIII	GTNAC	1 cut(s)	8
MalI	GATC	2 cut(s)	128, 350
MboI	GATC	2 cut(s)	126, 348
MflI	RGATCY	1 cut(s)	348
MhlI	GDGCHC	1 cut(s)	92
MlyI	GAGTC	1 cut(s)	266
MnlI	CCTC	8 cut(s)	29, 32, 35, 38, 41, 44, 212, 238
MroNI	GCCGGC	1 cut(s)	53
MseI	TTAA	1 cut(s)	336
MspI	CCGG	2 cut(s)	54, 64
MvnI	CGCG	1 cut(s)	131
MwoI	GCNNNNNNNGC	1 cut(s)	137
NaeI	GCCGGC	1 cut(s)	55
NdeII	GATC	2 cut(s)	126, 348
NgoMIV	GCCGGC	1 cut(s)	53
NlaIV	GGNNCC	1 cut(s)	89
NmuCI	GTSAC	1 cut(s)	8
PdiI	GCCGGC	1 cut(s)	55
PkrI	GCNGC	2 cut(s)	17, 52
PleI	GAGTC	1 cut(s)	265
PpsI	GAGTC	1 cut(s)	265
PspN4I	GGNNCC	1 cut(s)	89
PstNI	CAGNNNCTG	1 cut(s)	146
PsuI	RGATCY	1 cut(s)	348
SaqAI	TTAA	1 cut(s)	336
SatI	GCNGC	2 cut(s)	16, 51
Sau3AI	GATC	2 cut(s)	126, 348
SchI	GAGTC	1 cut(s)	266
SduI	GDGCHC	1 cut(s)	92
SetI	ASST	1 cut(s)	249
SmlI	CTYRAG	1 cut(s)	194
SmoI	CTYRAG	1 cut(s)	194
SsiI	CCGC	4 cut(s)	16, 67, 131, 154
TaaI	ACNGT	1 cut(s)	80
TaqI	TCGA	2 cut(s)	75, 96
TauI	GCSGC	1 cut(s)	18
Tru1I	TTAA	1 cut(s)	336
Tru9I	TTAA	1 cut(s)	336
TscAI	CASTG	1 cut(s)	17
TseFI	GTSAC	1 cut(s)	8
TseI	GCWGC	1 cut(s)	50
Tsp45I	GTSAC	1 cut(s)	8
TspRI	CASTG	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.