RchiOBHm_Chr5g0013891

Ribosomal protein S11

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0018977
Physical Location & Seq
Reverse (-)
9424134 .. 9424673
540 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ29438

Sequence Viewer

Length: 231 bp
ATGAAGGTGAAAGCCGATAGAGATGAGTCTTCCCCATACGCAGCTATGCTTGCAGCACAGGATGTTTCTACAAGATGCAAGGAATTGGGTACCGCTGCTCTTCACATTAAGCTGCGGGCAACTGGTGGCAACAAAACTAAGACACCTGGCCCTGGTGCCCAGTCTGCGCTCCGTGCTCTTGCTCGTTCTGGAATGAGAATTGGTCGTATAGGTAACTTTTCAAATTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ribosomal_S11

Protein Analysis

76

Amino Acids

8.02

Weight (kDa)

10.65

Isoelectric Point (pI)

37.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S11 PF00411 1 - 71 6.5e-20 Ribosomal protein S11
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018977)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0134651 RchiOBHm_Chr5g0013891
rosa_laevigata RLG00000019435
rosa_roxburghii Rroxscaffold_2G00109930
rosa_rugosa Rorug05G0013000.1
rosa_samantha Rh2CG355200 Rh5AG107600 Rh5BG103900 Rh5CG115800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 89
AccB1I GGYRCC 2 cut(s) 89, 155
AciI CCGC 2 cut(s) 93, 115
AcsI RAATTY 1 cut(s) 223
AfaI GTAC 1 cut(s) 91
AfiI CCNNNNNNNGG 1 cut(s) 152
AgsI TTSAA 1 cut(s) 222
AjnI CCWGG 2 cut(s) 145, 151
AluBI AGCT 2 cut(s) 44, 112
AluI AGCT 2 cut(s) 44, 112
Alw21I GWGCWC 1 cut(s) 178
AoxI GGCC 1 cut(s) 148
ApeKI GCWGC 4 cut(s) 41, 53, 95, 112
ApoI RAATTY 1 cut(s) 223
Asp718I GGTACC 1 cut(s) 89
AspLEI GCGC 1 cut(s) 169
AspS9I GGNCC 1 cut(s) 149
AsuHPI GGTGA 1 cut(s) 19
BaeGI GKGCMC 1 cut(s) 160
BanI GGYRCC 2 cut(s) 89, 155
BbsI GAAGAC 1 cut(s) 21
Bbv12I GWGCWC 1 cut(s) 178
BbvI GCAGC 4 cut(s) 53, 65, 82, 99
BciT130I CCWGG 2 cut(s) 147, 153
BisI GCNGC 4 cut(s) 42, 54, 96, 113
BlsI GCNGC 4 cut(s) 43, 55, 97, 114
Bme1390I CCNGG 2 cut(s) 147, 153
BmgT120I GGNCC 1 cut(s) 149
BmiI GGNNCC 2 cut(s) 91, 157
BmrFI CCNGG 2 cut(s) 147, 153
BmrI ACTGGG 1 cut(s) 154
BmsI GCATC 1 cut(s) 65
BmuI ACTGGG 1 cut(s) 154
BpiI GAAGAC 1 cut(s) 21
BsaJI CCNNGG 1 cut(s) 151
Bsc4I CCNNNNNNNGG 1 cut(s) 152
Bse1I ACTGG 2 cut(s) 127, 160
BseBI CCWGG 2 cut(s) 147, 153
BseDI CCNNGG 1 cut(s) 151
BseGI GGATG 1 cut(s) 67
BseLI CCNNNNNNNGG 1 cut(s) 152
BseNI ACTGG 2 cut(s) 127, 160
BseSI GKGCMC 1 cut(s) 160
BseXI GCAGC 4 cut(s) 53, 65, 82, 99
BshFI GGCC 1 cut(s) 150
BshNI GGYRCC 2 cut(s) 89, 155
BsiHKAI GWGCWC 1 cut(s) 178
BslI CCNNNNNNNGG 1 cut(s) 152
BsnI GGCC 1 cut(s) 150
Bsp1286I GDGCHC 2 cut(s) 160, 178
BspACI CCGC 2 cut(s) 93, 115
BspANI GGCC 1 cut(s) 150
BspLI GGNNCC 2 cut(s) 91, 157
BspQI GCTCTTC 1 cut(s) 105
BspT107I GGYRCC 2 cut(s) 89, 155
BsrI ACTGG 2 cut(s) 127, 160
BssECI CCNNGG 1 cut(s) 151
Bst2UI CCWGG 2 cut(s) 147, 153
Bst6I CTCTTC 1 cut(s) 105
BstC8I GCNNGC 2 cut(s) 51, 117
BstDEI CTNAG 1 cut(s) 138
BstF5I GGATG 1 cut(s) 67
BstHHI GCGC 1 cut(s) 169
BstMWI GCNNNNNNNGC 3 cut(s) 50, 164, 173
BstNI CCWGG 2 cut(s) 147, 153
BstSCI CCNGG 2 cut(s) 145, 151
BstSLI GKGCMC 1 cut(s) 160
BstV1I GCAGC 4 cut(s) 53, 65, 82, 99
BstV2I GAAGAC 1 cut(s) 21
BsuRI GGCC 1 cut(s) 150
BtsCI GGATG 1 cut(s) 67
Cac8I GCNNGC 2 cut(s) 51, 117
CfoI GCGC 1 cut(s) 169
Cfr13I GGNCC 1 cut(s) 149
Csp6I GTAC 1 cut(s) 90
CviJI RGCY 4 cut(s) 14, 44, 112, 150
CviKI_1 RGCY 4 cut(s) 14, 44, 112, 150
CviQI GTAC 1 cut(s) 90
DdeI CTNAG 1 cut(s) 138
Eam1104I CTCTTC 1 cut(s) 105
EarI CTCTTC 1 cut(s) 105
EcoRII CCWGG 2 cut(s) 145, 151
FaiI YATR 3 cut(s) 37, 47, 209
FauI CCCGC 1 cut(s) 108
Fnu4HI GCNGC 4 cut(s) 42, 54, 96, 113
FokI GGATG 1 cut(s) 74
Fsp4HI GCNGC 4 cut(s) 42, 54, 96, 113
GlaI GCGC 1 cut(s) 168
GluI GCNGC 4 cut(s) 42, 54, 96, 113
HaeIII GGCC 1 cut(s) 150
HhaI GCGC 1 cut(s) 169
Hin6I GCGC 1 cut(s) 167
HinP1I GCGC 1 cut(s) 167
HinfI GANTC 1 cut(s) 26
HphI GGTGA 1 cut(s) 19
Hpy188III TCNNGA 1 cut(s) 189
HpyCH4V TGCA 2 cut(s) 53, 78
HpyF10VI GCNNNNNNNGC 3 cut(s) 50, 164, 173
HpyF3I CTNAG 1 cut(s) 138
HspAI GCGC 1 cut(s) 167
KpnI GGTACC 1 cut(s) 93
LguI GCTCTTC 1 cut(s) 105
LmnI GCTCC 1 cut(s) 174
LpnPI CCDG 8 cut(s) 44, 108, 132, 138, 159, 165, 173, 174
Lsp1109I GCAGC 4 cut(s) 53, 65, 82, 99
LweI GCATC 1 cut(s) 65
MaeIII GTNAC 1 cut(s) 212
MboII GAAGA 2 cut(s) 21, 92
MhlI GDGCHC 2 cut(s) 160, 178
MluCI AATT 3 cut(s) 83, 198, 223
MlyI GAGTC 1 cut(s) 35
MseI TTAA 2 cut(s) 108, 229
MspA1I CMGCKG 1 cut(s) 95
MspR9I CCNGG 2 cut(s) 147, 153
MvaI CCWGG 2 cut(s) 147, 153
MwoI GCNNNNNNNGC 3 cut(s) 50, 164, 173
NlaIV GGNNCC 2 cut(s) 91, 157
PciSI GCTCTTC 1 cut(s) 105
PkrI GCNGC 4 cut(s) 43, 55, 97, 114
PleI GAGTC 1 cut(s) 34
PpsI GAGTC 1 cut(s) 34
Psp6I CCWGG 2 cut(s) 145, 151
PspGI CCWGG 2 cut(s) 145, 151
PspN4I GGNNCC 2 cut(s) 91, 157
PspPI GGNCC 1 cut(s) 149
RsaI GTAC 1 cut(s) 91
RsaNI GTAC 1 cut(s) 90
SapI GCTCTTC 1 cut(s) 105
SaqAI TTAA 2 cut(s) 108, 229
SatI GCNGC 4 cut(s) 42, 54, 96, 113
Sau96I GGNCC 1 cut(s) 149
SchI GAGTC 1 cut(s) 35
ScrFI CCNGG 2 cut(s) 147, 153
SduI GDGCHC 2 cut(s) 160, 178
SetI ASST 5 cut(s) 9, 46, 114, 148, 214
SfaNI GCATC 1 cut(s) 65
Sse9I AATT 3 cut(s) 83, 198, 223
SsiI CCGC 2 cut(s) 93, 115
StyD4I CCNGG 2 cut(s) 145, 151
TasI AATT 3 cut(s) 83, 198, 223
Tru1I TTAA 2 cut(s) 108, 229
Tru9I TTAA 2 cut(s) 108, 229
TseI GCWGC 4 cut(s) 41, 53, 95, 112
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 161
XapI RAATTY 1 cut(s) 223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.