Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0018977

Physical Location & Seq

Genomic Coordinates Reverse (-)

9895685 .. 9897184

Gene Structure 1500 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG107600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGAGATGCTGTTTGCTATGTTTCAGTTTATCATCTATGATTTCTGTAAATACAGGTGGTATGAAGGTGAAAGCCGACAGGGATGAGTCTTCCCCATACGCAGCTATGCTTGCAGCACAGGATGTTTCTACAAGATGCAAGGAATTGGGTATTACTGCTCTTCATATTAAGCTGCGTGCAACTGGTGGCAACAAAACTAAGACACCTGGCCCTGGTGCTCAGTCTGCACTCCGTGCTCTTGCTCGCTCTGGAATGAGAATTGGTCGTATAGGTAACATTTCATATTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0000462 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015935 GO:0016043 GO:0016070 GO:0016072 GO:0019538 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030490 GO:0032991 GO:0034470 GO:0034622 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042255 GO:0042274 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0048027 GO:0065003 GO:0070181 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S11

Protein Analysis

96

Amino Acids

10.18

Weight (kDa)

10.05

Isoelectric Point (pI)

41.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S11	PF00411	13 - 93	1.9e-23	Ribosomal protein S11

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0018977)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0134651 RchiOBHm_Chr5g0013891
rosa_laevigata	RLG00000019435
rosa_roxburghii	Rroxscaffold_2G00109930
rosa_rugosa	Rorug05G0013000.1
rosa_samantha	Rh2CG355200 Rh5AG107600 Rh5BG103900 Rh5CG115800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AdeI	CACNNNGTG	1 cut(s)	233
AfiI	CCNNNNNNNGG	1 cut(s)	212
AjnI	CCWGG	2 cut(s)	205, 211
AluBI	AGCT	2 cut(s)	104, 172
AluI	AGCT	2 cut(s)	104, 172
Alw21I	GWGCWC	2 cut(s)	220, 238
AoxI	GGCC	1 cut(s)	208
ApeKI	GCWGC	3 cut(s)	101, 113, 172
AspS9I	GGNCC	1 cut(s)	209
AsuHPI	GGTGA	1 cut(s)	79
BbsI	GAAGAC	1 cut(s)	81
Bbv12I	GWGCWC	2 cut(s)	220, 238
BbvI	GCAGC	3 cut(s)	113, 125, 159
BciT130I	CCWGG	2 cut(s)	207, 213
BisI	GCNGC	3 cut(s)	102, 114, 173
BlsI	GCNGC	3 cut(s)	103, 115, 174
Bme1390I	CCNGG	2 cut(s)	207, 213
BmgT120I	GGNCC	1 cut(s)	209
BmrFI	CCNGG	2 cut(s)	207, 213
BmsI	GCATC	1 cut(s)	125
BpiI	GAAGAC	1 cut(s)	81
BsaJI	CCNNGG	1 cut(s)	211
Bsc4I	CCNNNNNNNGG	1 cut(s)	212
Bse1I	ACTGG	1 cut(s)	187
BseBI	CCWGG	2 cut(s)	207, 213
BseDI	CCNNGG	1 cut(s)	211
BseGI	GGATG	2 cut(s)	88, 127
BseLI	CCNNNNNNNGG	1 cut(s)	212
BseMII	CTCAG	1 cut(s)	233
BseNI	ACTGG	1 cut(s)	187
BseXI	GCAGC	3 cut(s)	113, 125, 159
BsgI	GTGCAG	1 cut(s)	210
BshFI	GGCC	1 cut(s)	210
BsiHKAI	GWGCWC	2 cut(s)	220, 238
BslI	CCNNNNNNNGG	1 cut(s)	212
BsnI	GGCC	1 cut(s)	210
Bsp1286I	GDGCHC	2 cut(s)	220, 238
BspANI	GGCC	1 cut(s)	210
BspCNI	CTCAG	1 cut(s)	232
BspQI	GCTCTTC	1 cut(s)	165
BsrI	ACTGG	1 cut(s)	187
BssECI	CCNNGG	1 cut(s)	211
Bst2UI	CCWGG	2 cut(s)	207, 213
Bst6I	CTCTTC	1 cut(s)	165
BstAPI	GCANNNNNTGC	1 cut(s)	233
BstC8I	GCNNGC	3 cut(s)	111, 177, 244
BstDEI	CTNAG	2 cut(s)	198, 219
BstF5I	GGATG	2 cut(s)	88, 127
BstMWI	GCNNNNNNNGC	3 cut(s)	110, 224, 233
BstNI	CCWGG	2 cut(s)	207, 213
BstSCI	CCNGG	2 cut(s)	205, 211
BstV1I	GCAGC	3 cut(s)	113, 125, 159
BstV2I	GAAGAC	1 cut(s)	81
BsuRI	GGCC	1 cut(s)	210
BtsCI	GGATG	2 cut(s)	88, 127
Cac8I	GCNNGC	3 cut(s)	111, 177, 244
Cfr13I	GGNCC	1 cut(s)	209
CviJI	RGCY	4 cut(s)	74, 104, 172, 210
CviKI_1	RGCY	4 cut(s)	74, 104, 172, 210
DdeI	CTNAG	2 cut(s)	198, 219
DraIII	CACNNNGTG	1 cut(s)	233
Eam1104I	CTCTTC	1 cut(s)	165
EarI	CTCTTC	1 cut(s)	165
EcoRII	CCWGG	2 cut(s)	205, 211
FaiI	YATR	8 cut(s)	19, 38, 62, 97, 107, 165, 269, 283
Fnu4HI	GCNGC	3 cut(s)	102, 114, 173
FokI	GGATG	2 cut(s)	95, 134
Fsp4HI	GCNGC	3 cut(s)	102, 114, 173
GluI	GCNGC	3 cut(s)	102, 114, 173
HaeIII	GGCC	1 cut(s)	210
HinfI	GANTC	1 cut(s)	86
HphI	GGTGA	1 cut(s)	79
Hpy188III	TCNNGA	1 cut(s)	249
HpyAV	CCTTC	1 cut(s)	58
HpyCH4V	TGCA	4 cut(s)	113, 138, 179, 227
HpyF10VI	GCNNNNNNNGC	3 cut(s)	110, 224, 233
HpyF3I	CTNAG	2 cut(s)	198, 219
LguI	GCTCTTC	1 cut(s)	165
LpnPI	CCDG	9 cut(s)	39, 64, 104, 168, 192, 198, 219, 225, 234
Lsp1109I	GCAGC	3 cut(s)	113, 125, 159
LweI	GCATC	1 cut(s)	125
MaeIII	GTNAC	1 cut(s)	272
MboII	GAAGA	2 cut(s)	81, 152
MhlI	GDGCHC	2 cut(s)	220, 238
MluCI	AATT	2 cut(s)	143, 258
MlyI	GAGTC	1 cut(s)	95
MseI	TTAA	2 cut(s)	168, 289
MspR9I	CCNGG	2 cut(s)	207, 213
MvaI	CCWGG	2 cut(s)	207, 213
MwoI	GCNNNNNNNGC	3 cut(s)	110, 224, 233
PciSI	GCTCTTC	1 cut(s)	165
PkrI	GCNGC	3 cut(s)	103, 115, 174
PleI	GAGTC	1 cut(s)	94
PpsI	GAGTC	1 cut(s)	94
Psp6I	CCWGG	2 cut(s)	205, 211
PspGI	CCWGG	2 cut(s)	205, 211
PspPI	GGNCC	1 cut(s)	209
SapI	GCTCTTC	1 cut(s)	165
SaqAI	TTAA	2 cut(s)	168, 289
SatI	GCNGC	3 cut(s)	102, 114, 173
Sau96I	GGNCC	1 cut(s)	209
SchI	GAGTC	1 cut(s)	95
ScrFI	CCNGG	2 cut(s)	207, 213
SduI	GDGCHC	2 cut(s)	220, 238
SetI	ASST	6 cut(s)	58, 69, 106, 174, 208, 274
SfaNI	GCATC	1 cut(s)	125
Sse9I	AATT	2 cut(s)	143, 258
StyD4I	CCNGG	2 cut(s)	205, 211
TasI	AATT	2 cut(s)	143, 258
Tru1I	TTAA	2 cut(s)	168, 289
Tru9I	TTAA	2 cut(s)	168, 289
TseI	GCWGC	3 cut(s)	101, 113, 172
TspDTI	ATGAA	3 cut(s)	77, 152, 270
TspGWI	ACGGA	1 cut(s)	221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.