Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0018977

Physical Location & Seq

Genomic Coordinates Reverse (-)

9490435 .. 9491669

Gene Structure 1235 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG103900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGGTCCCGCACATTGCAGCCGTTGACCGAGACGTACGCAATCCCAAGGGTTATCACTGTTTATCATCTGTGATTTCTGTAAATGCAGGTGGTATGAAGGTGAAAGCCGACAGAGATGAGTCTTCCCCATACGCAGCTATGCTTGCAGCACAGGATGTTTCTACGAGAGGCAAGGAGTTGGGTATTACTGTTCTTCATATTAAGCTGCGGGCAACAGCTGGTGGCAACAAAACTAGGACCCCTGGCCCTAGTGCCCAGTCTGCACTCCGTGCTCTTGCTCGTTCTGGAATGAGAATTGGTCGTATAGCAAACCAGGCAACGGCATATGACATGATACATATACAAAGGGAAACAAGGGAAGAATGGTTGTCAGCCCAGGCACAACAAAAGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0000462 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015935 GO:0016043 GO:0016070 GO:0016072 GO:0019538 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030490 GO:0032991 GO:0034470 GO:0034622 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042255 GO:0042274 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0048027 GO:0065003 GO:0070181 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S11

Protein Analysis

131

Amino Acids

14.17

Weight (kDa)

10.16

Isoelectric Point (pI)

46.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S11	PF00411	23 - 104	4.4e-21	Ribosomal protein S11

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0018977)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0134651 RchiOBHm_Chr5g0013891
rosa_laevigata	RLG00000019435
rosa_roxburghii	Rroxscaffold_2G00109930
rosa_rugosa	Rorug05G0013000.1
rosa_samantha	Rh2CG355200 Rh5AG107600 Rh5BG103900 Rh5CG115800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	77
Acc36I	ACCTGC	1 cut(s)	77
AciI	CCGC	2 cut(s)	8, 208
AdeI	CACNNNGTG	1 cut(s)	269
AfaI	GTAC	1 cut(s)	36
AfiI	CCNNNNNNNGG	1 cut(s)	319
AjnI	CCWGG	3 cut(s)	241, 312, 375
AluBI	AGCT	3 cut(s)	137, 205, 218
AluI	AGCT	3 cut(s)	137, 205, 218
Alw21I	GWGCWC	1 cut(s)	274
Alw26I	GTCTC	1 cut(s)	24
AoxI	GGCC	1 cut(s)	244
ApeKI	GCWGC	4 cut(s)	17, 134, 146, 205
AspS9I	GGNCC	3 cut(s)	4, 237, 245
AsuHPI	GGTGA	1 cut(s)	112
AvaII	GGWCC	2 cut(s)	4, 237
BaeGI	GKGCMC	1 cut(s)	256
BbsI	GAAGAC	1 cut(s)	114
Bbv12I	GWGCWC	1 cut(s)	274
BbvI	GCAGC	4 cut(s)	29, 146, 158, 192
BceAI	ACGGC	2 cut(s)	5, 336
BciT130I	CCWGG	3 cut(s)	243, 314, 377
BcoDI	GTCTC	1 cut(s)	24
BfaI	CTAG	3 cut(s)	234, 249, 394
BfuAI	ACCTGC	1 cut(s)	77
BisI	GCNGC	4 cut(s)	18, 135, 147, 206
BlsI	GCNGC	4 cut(s)	19, 136, 148, 207
Bme1390I	CCNGG	3 cut(s)	243, 314, 377
Bme18I	GGWCC	2 cut(s)	4, 237
BmgT120I	GGNCC	3 cut(s)	4, 237, 245
BmiI	GGNNCC	2 cut(s)	6, 239
BmrFI	CCNGG	3 cut(s)	243, 314, 377
BmrI	ACTGGG	1 cut(s)	250
BmuI	ACTGGG	1 cut(s)	250
BpiI	GAAGAC	1 cut(s)	114
BsaJI	CCNNGG	3 cut(s)	45, 241, 375
Bsc4I	CCNNNNNNNGG	1 cut(s)	319
Bse1I	ACTGG	1 cut(s)	256
Bse3DI	GCAATG	1 cut(s)	12
BseBI	CCWGG	3 cut(s)	243, 314, 377
BseDI	CCNNGG	3 cut(s)	45, 241, 375
BseGI	GGATG	1 cut(s)	160
BseLI	CCNNNNNNNGG	1 cut(s)	319
BseMI	GCAATG	1 cut(s)	12
BseNI	ACTGG	1 cut(s)	256
BseSI	GKGCMC	1 cut(s)	256
BseXI	GCAGC	4 cut(s)	29, 146, 158, 192
BsgI	GTGCAG	1 cut(s)	246
BshFI	GGCC	1 cut(s)	246
BsiHKAI	GWGCWC	1 cut(s)	274
BsiWI	CGTACG	1 cut(s)	34
BslI	CCNNNNNNNGG	1 cut(s)	319
BsmAI	GTCTC	1 cut(s)	24
BsmBI	CGTCTC	1 cut(s)	24
BsnI	GGCC	1 cut(s)	246
Bsp1286I	GDGCHC	2 cut(s)	256, 274
BspACI	CCGC	2 cut(s)	8, 208
BspANI	GGCC	1 cut(s)	246
BspLI	GGNNCC	2 cut(s)	6, 239
BspMI	ACCTGC	1 cut(s)	77
BsrDI	GCAATG	1 cut(s)	12
BsrI	ACTGG	1 cut(s)	256
BssECI	CCNNGG	3 cut(s)	45, 241, 375
BssT1I	CCWWGG	1 cut(s)	45
Bst2UI	CCWGG	3 cut(s)	243, 314, 377
Bst4CI	ACNGT	2 cut(s)	59, 190
BstAPI	GCANNNNNTGC	1 cut(s)	269
BstC8I	GCNNGC	2 cut(s)	144, 210
BstF5I	GGATG	1 cut(s)	160
BstMAI	GTCTC	1 cut(s)	24
BstMWI	GCNNNNNNNGC	4 cut(s)	143, 260, 269, 314
BstNI	CCWGG	3 cut(s)	243, 314, 377
BstSCI	CCNGG	3 cut(s)	241, 312, 375
BstSLI	GKGCMC	1 cut(s)	256
BstV1I	GCAGC	4 cut(s)	29, 146, 158, 192
BstV2I	GAAGAC	1 cut(s)	114
BsuRI	GGCC	1 cut(s)	246
BtsCI	GGATG	1 cut(s)	160
BtsIMutI	CAGTG	1 cut(s)	55
BveI	ACCTGC	1 cut(s)	77
Cac8I	GCNNGC	2 cut(s)	144, 210
Cfr13I	GGNCC	3 cut(s)	4, 237, 245
Csp6I	GTAC	1 cut(s)	35
CviAII	CATG	1 cut(s)	331
CviJI	RGCY	7 cut(s)	20, 107, 137, 205, 218, 246, 374
CviKI_1	RGCY	7 cut(s)	20, 107, 137, 205, 218, 246, 374
CviQI	GTAC	1 cut(s)	35
DraIII	CACNNNGTG	1 cut(s)	269
Eco130I	CCWWGG	1 cut(s)	45
Eco47I	GGWCC	2 cut(s)	4, 237
EcoO109I	RGGNCCY	1 cut(s)	237
EcoRII	CCWGG	3 cut(s)	241, 312, 375
EcoT14I	CCWWGG	1 cut(s)	45
ErhI	CCWWGG	1 cut(s)	45
Esp3I	CGTCTC	1 cut(s)	24
FaeI	CATG	1 cut(s)	334
FatI	CATG	1 cut(s)	330
FauI	CCCGC	2 cut(s)	15, 201
FauNDI	CATATG	1 cut(s)	325
Fnu4HI	GCNGC	4 cut(s)	18, 135, 147, 206
FokI	GGATG	1 cut(s)	167
Fsp4HI	GCNGC	4 cut(s)	18, 135, 147, 206
FspBI	CTAG	3 cut(s)	234, 249, 394
GluI	GCNGC	4 cut(s)	18, 135, 147, 206
HaeIII	GGCC	1 cut(s)	246
Hin1II	CATG	1 cut(s)	334
HincII	GTYRAC	1 cut(s)	25
HindII	GTYRAC	1 cut(s)	25
HinfI	GANTC	1 cut(s)	119
HphI	GGTGA	1 cut(s)	112
Hpy166II	GTNNAC	1 cut(s)	25
Hpy188III	TCNNGA	1 cut(s)	285
Hpy8I	GTNNAC	1 cut(s)	25
HpyAV	CCTTC	1 cut(s)	91
HpyCH4III	ACNGT	2 cut(s)	59, 190
HpyCH4IV	ACGT	1 cut(s)	33
HpyCH4V	TGCA	4 cut(s)	17, 86, 146, 263
HpyF10VI	GCNNNNNNNGC	4 cut(s)	143, 260, 269, 314
HpySE526I	ACGT	1 cut(s)	33
Hsp92II	CATG	1 cut(s)	334
Lsp1109I	GCAGC	4 cut(s)	29, 146, 158, 192
MaeI	CTAG	3 cut(s)	234, 249, 394
MaeII	ACGT	1 cut(s)	33
MboII	GAAGA	3 cut(s)	114, 185, 371
MhlI	GDGCHC	2 cut(s)	256, 274
MluCI	AATT	1 cut(s)	294
MlyI	GAGTC	1 cut(s)	128
MnlI	CCTC	1 cut(s)	161
MseI	TTAA	1 cut(s)	201
MspA1I	CMGCKG	1 cut(s)	218
MspR9I	CCNGG	3 cut(s)	243, 314, 377
MvaI	CCWGG	3 cut(s)	243, 314, 377
MwoI	GCNNNNNNNGC	4 cut(s)	143, 260, 269, 314
NdeI	CATATG	1 cut(s)	325
NlaIII	CATG	1 cut(s)	334
NlaIV	GGNNCC	2 cut(s)	6, 239
PaqCI	CACCTGC	1 cut(s)	77
Pfl23II	CGTACG	1 cut(s)	34
PkrI	GCNGC	4 cut(s)	19, 136, 148, 207
PleI	GAGTC	1 cut(s)	127
PpsI	GAGTC	1 cut(s)	127
PpuMI	RGGWCCY	1 cut(s)	237
Psp5II	RGGWCCY	1 cut(s)	237
Psp6I	CCWGG	3 cut(s)	241, 312, 375
PspGI	CCWGG	3 cut(s)	241, 312, 375
PspLI	CGTACG	1 cut(s)	34
PspN4I	GGNNCC	2 cut(s)	6, 239
PspPI	GGNCC	3 cut(s)	4, 237, 245
PspPPI	RGGWCCY	1 cut(s)	237
PvuII	CAGCTG	1 cut(s)	218
RsaI	GTAC	1 cut(s)	36
RsaNI	GTAC	1 cut(s)	35
SaqAI	TTAA	1 cut(s)	201
SatI	GCNGC	4 cut(s)	18, 135, 147, 206
Sau96I	GGNCC	3 cut(s)	4, 237, 245
SchI	GAGTC	1 cut(s)	128
ScrFI	CCNGG	3 cut(s)	243, 314, 377
SduI	GDGCHC	2 cut(s)	256, 274
SetI	ASST	6 cut(s)	36, 91, 102, 139, 207, 220
SinI	GGWCC	2 cut(s)	4, 237
Sse9I	AATT	1 cut(s)	294
SsiI	CCGC	2 cut(s)	8, 208
SspMI	CTAG	3 cut(s)	234, 249, 394
StyD4I	CCNGG	3 cut(s)	241, 312, 375
StyI	CCWWGG	1 cut(s)	45
TaaI	ACNGT	2 cut(s)	59, 190
TaiI	ACGT	1 cut(s)	36
TaqII	GACCGA	1 cut(s)	42
TasI	AATT	1 cut(s)	294
Tru1I	TTAA	1 cut(s)	201
Tru9I	TTAA	1 cut(s)	201
TscAI	CASTG	1 cut(s)	62
TseI	GCWGC	4 cut(s)	17, 134, 146, 205
TspDTI	ATGAA	2 cut(s)	110, 185
TspGWI	ACGGA	1 cut(s)	257
TspRI	CASTG	1 cut(s)	62
VpaK11BI	GGWCC	2 cut(s)	4, 237
XspI	CTAG	3 cut(s)	234, 249, 394

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.