Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0018977

Physical Location & Seq

Genomic Coordinates Reverse (-)

34187709 .. 34189483

Gene Structure 1775 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00109930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 213 bp

ATGCTCATATTTATGCACTGCATGCTTGCAGCACAGGATGTATCTACGCAGTGCTTGGTTCTTGGAATTAGTCCTTTGCATATAAAGCTCAAGGCTGCTGGTCCATTTGCTCAGTCAGCAATGAGAGCACTTTCTCGTGCTGACATGACCAATTTCCACCAACAATACCCACAGAAAGCTTGTCTGGAAGAAGGTGACTTAATAAAAGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0000462 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015935 GO:0016043 GO:0016070 GO:0016072 GO:0019538 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030490 GO:0032991 GO:0034470 GO:0034622 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042255 GO:0042274 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0048027 GO:0065003 GO:0070181 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S11

Protein Analysis

70

Amino Acids

7.69

Weight (kDa)

7.77

Isoelectric Point (pI)

55.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S11	PF00411	7 - 49	1.9e-07	Ribosomal protein S11

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0018977)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0134651 RchiOBHm_Chr5g0013891
rosa_laevigata	RLG00000019435
rosa_roxburghii	Rroxscaffold_2G00109930
rosa_rugosa	Rorug05G0013000.1
rosa_samantha	Rh2CG355200 Rh5AG107600 Rh5BG103900 Rh5CG115800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AluBI	AGCT	2 cut(s)	88, 179
AluI	AGCT	2 cut(s)	88, 179
Alw21I	GWGCWC	1 cut(s)	130
ApeKI	GCWGC	2 cut(s)	29, 95
AspS9I	GGNCC	1 cut(s)	101
AsuHPI	GGTGA	1 cut(s)	206
AvaII	GGWCC	1 cut(s)	101
BauI	CACGAG	1 cut(s)	135
Bbv12I	GWGCWC	1 cut(s)	130
BbvI	GCAGC	2 cut(s)	41, 82
BisI	GCNGC	2 cut(s)	30, 96
BlsI	GCNGC	2 cut(s)	31, 97
Bme18I	GGWCC	1 cut(s)	101
BmgT120I	GGNCC	1 cut(s)	101
BpuEI	CTTGAG	1 cut(s)	74
Bse3DI	GCAATG	1 cut(s)	126
BseGI	GGATG	1 cut(s)	43
BseMI	GCAATG	1 cut(s)	126
BseMII	CTCAG	1 cut(s)	125
BseXI	GCAGC	2 cut(s)	41, 82
BsiHKAI	GWGCWC	1 cut(s)	130
Bsp1286I	GDGCHC	1 cut(s)	130
BspCNI	CTCAG	1 cut(s)	124
BsrDI	GCAATG	1 cut(s)	126
BssSI	CACGAG	1 cut(s)	135
Bst2BI	CACGAG	1 cut(s)	135
BstAPI	GCANNNNNTGC	1 cut(s)	22
BstC8I	GCNNGC	2 cut(s)	23, 27
BstDEI	CTNAG	1 cut(s)	111
BstF5I	GGATG	1 cut(s)	43
BstMWI	GCNNNNNNNGC	4 cut(s)	22, 85, 116, 125
BstNSI	RCATGY	1 cut(s)	25
BstV1I	GCAGC	2 cut(s)	41, 82
BtsCI	GGATG	1 cut(s)	43
BtsI	GCAGTG	2 cut(s)	16, 56
BtsIMutI	CAGTG	2 cut(s)	16, 56
Cac8I	GCNNGC	2 cut(s)	23, 27
Cfr13I	GGNCC	1 cut(s)	101
CviAII	CATG	2 cut(s)	22, 145
CviJI	RGCY	3 cut(s)	88, 95, 179
CviKI_1	RGCY	3 cut(s)	88, 95, 179
DdeI	CTNAG	1 cut(s)	111
Eco47I	GGWCC	1 cut(s)	101
FaeI	CATG	2 cut(s)	25, 148
FaiI	YATR	6 cut(s)	8, 14, 23, 81, 83, 146
FatI	CATG	2 cut(s)	21, 144
Fnu4HI	GCNGC	2 cut(s)	30, 96
FokI	GGATG	1 cut(s)	50
Fsp4HI	GCNGC	2 cut(s)	30, 96
GluI	GCNGC	2 cut(s)	30, 96
Hin1II	CATG	2 cut(s)	25, 148
HindIII	AAGCTT	1 cut(s)	177
HphI	GGTGA	1 cut(s)	206
Hpy188III	TCNNGA	1 cut(s)	185
HpyAV	CCTTC	1 cut(s)	185
HpyCH4V	TGCA	4 cut(s)	16, 21, 29, 79
HpyF10VI	GCNNNNNNNGC	4 cut(s)	22, 85, 116, 125
HpyF3I	CTNAG	1 cut(s)	111
Hsp92II	CATG	2 cut(s)	25, 148
LpnPI	CCDG	3 cut(s)	20, 84, 170
Lsp1109I	GCAGC	2 cut(s)	41, 82
MaeIII	GTNAC	1 cut(s)	194
MboII	GAAGA	1 cut(s)	200
MhlI	GDGCHC	1 cut(s)	130
MluCI	AATT	2 cut(s)	66, 151
MseI	TTAA	1 cut(s)	200
MslI	CAYNNNNRTG	1 cut(s)	11
MwoI	GCNNNNNNNGC	4 cut(s)	22, 85, 116, 125
NlaIII	CATG	2 cut(s)	25, 148
NmuCI	GTSAC	1 cut(s)	194
NspI	RCATGY	1 cut(s)	25
PaeI	GCATGC	1 cut(s)	25
PkrI	GCNGC	2 cut(s)	31, 97
PspPI	GGNCC	1 cut(s)	101
RseI	CAYNNNNRTG	1 cut(s)	11
SaqAI	TTAA	1 cut(s)	200
SatI	GCNGC	2 cut(s)	30, 96
Sau96I	GGNCC	1 cut(s)	101
SduI	GDGCHC	1 cut(s)	130
SetI	ASST	4 cut(s)	90, 181, 196, 211
SinI	GGWCC	1 cut(s)	101
SmiMI	CAYNNNNRTG	1 cut(s)	11
SmlI	CTYRAG	1 cut(s)	89
SmoI	CTYRAG	1 cut(s)	89
SphI	GCATGC	1 cut(s)	25
Sse9I	AATT	2 cut(s)	66, 151
TasI	AATT	2 cut(s)	66, 151
Tru1I	TTAA	1 cut(s)	200
Tru9I	TTAA	1 cut(s)	200
TscAI	CASTG	2 cut(s)	23, 56
TseFI	GTSAC	1 cut(s)	194
TseI	GCWGC	2 cut(s)	29, 95
Tsp45I	GTSAC	1 cut(s)	194
TspRI	CASTG	2 cut(s)	23, 56
VpaK11BI	GGWCC	1 cut(s)	101
XceI	RCATGY	1 cut(s)	25

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.