Rh5CG115800

Ribosomal protein S11

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0018977
Physical Location & Seq
Reverse (-)
9594525 .. 9595134
610 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG115800.1

Sequence Viewer

Length: 306 bp
ATGGTCCCGCACATTGCGGCGGTCGACTTTCTGTTGACTGAGACGTACAGAGTCCCAAGGGTTATCACTGGTGGTATGAAGGTGAAAGCCGATAGAGATGAGTCTTCCCCATACGCAGCTATGCTTGCAGCACAGGATGTTTCTACAAGATGCAAGGAATTGGGTACCGCTGCTCTTCACATTAAGCTGCGGGCAACTGGTGGCAACAAAACTAAGACACCTGGCCCTGGTGCCCAGTCTGCGCTCCGTGCTCTTGCTCGTTCTGGAATGAGAATTGGTCGTATAGGTAACTTTTCAAATTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ribosomal_S11

Protein Analysis

101

Amino Acids

10.76

Weight (kDa)

10.42

Isoelectric Point (pI)

36.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S11 PF00411 21 - 96 5.5e-22 Ribosomal protein S11
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018977)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0134651 RchiOBHm_Chr5g0013891
rosa_laevigata RLG00000019435
rosa_roxburghii Rroxscaffold_2G00109930
rosa_rugosa Rorug05G0013000.1
rosa_samantha Rh2CG355200 Rh5AG107600 Rh5BG103900 Rh5CG115800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 164
AccB1I GGYRCC 2 cut(s) 164, 230
AccI GTMKAC 1 cut(s) 24
AciI CCGC 5 cut(s) 8, 17, 20, 168, 190
AcsI RAATTY 1 cut(s) 298
AfaI GTAC 2 cut(s) 47, 166
AfiI CCNNNNNNNGG 1 cut(s) 227
AgsI TTSAA 1 cut(s) 297
AjnI CCWGG 2 cut(s) 220, 226
AluBI AGCT 2 cut(s) 119, 187
AluI AGCT 2 cut(s) 119, 187
Alw21I GWGCWC 1 cut(s) 253
Alw26I GTCTC 1 cut(s) 35
AoxI GGCC 1 cut(s) 223
ApeKI GCWGC 4 cut(s) 116, 128, 170, 187
ApoI RAATTY 1 cut(s) 298
Asp718I GGTACC 1 cut(s) 164
AspLEI GCGC 1 cut(s) 244
AspS9I GGNCC 2 cut(s) 4, 224
AsuHPI GGTGA 1 cut(s) 94
AvaII GGWCC 1 cut(s) 4
BaeGI GKGCMC 1 cut(s) 235
BanI GGYRCC 2 cut(s) 164, 230
BbsI GAAGAC 1 cut(s) 96
Bbv12I GWGCWC 1 cut(s) 253
BbvI GCAGC 4 cut(s) 128, 140, 157, 174
BciT130I CCWGG 2 cut(s) 222, 228
BcoDI GTCTC 1 cut(s) 35
BisI GCNGC 5 cut(s) 18, 117, 129, 171, 188
BlsI GCNGC 5 cut(s) 19, 118, 130, 172, 189
Bme1390I CCNGG 2 cut(s) 222, 228
Bme18I GGWCC 1 cut(s) 4
BmgT120I GGNCC 2 cut(s) 4, 224
BmiI GGNNCC 3 cut(s) 6, 166, 232
BmrFI CCNGG 2 cut(s) 222, 228
BmrI ACTGGG 1 cut(s) 229
BmsI GCATC 1 cut(s) 140
BmuI ACTGGG 1 cut(s) 229
BpiI GAAGAC 1 cut(s) 96
BsaJI CCNNGG 2 cut(s) 56, 226
Bsc4I CCNNNNNNNGG 1 cut(s) 227
Bse1I ACTGG 3 cut(s) 73, 202, 235
Bse3DI GCAATG 1 cut(s) 12
BseBI CCWGG 2 cut(s) 222, 228
BseDI CCNNGG 2 cut(s) 56, 226
BseGI GGATG 1 cut(s) 142
BseLI CCNNNNNNNGG 1 cut(s) 227
BseMI GCAATG 1 cut(s) 12
BseMII CTCAG 1 cut(s) 30
BseNI ACTGG 3 cut(s) 73, 202, 235
BseSI GKGCMC 1 cut(s) 235
BseXI GCAGC 4 cut(s) 128, 140, 157, 174
Bsh1285I CGRYCG 1 cut(s) 24
BshFI GGCC 1 cut(s) 225
BshNI GGYRCC 2 cut(s) 164, 230
BsiEI CGRYCG 1 cut(s) 24
BsiHKAI GWGCWC 1 cut(s) 253
BslFI GGGAC 1 cut(s) 38
BslI CCNNNNNNNGG 1 cut(s) 227
BsmAI GTCTC 1 cut(s) 35
BsmBI CGTCTC 1 cut(s) 35
BsmFI GGGAC 1 cut(s) 38
BsnI GGCC 1 cut(s) 225
Bsp1286I GDGCHC 2 cut(s) 235, 253
BspACI CCGC 5 cut(s) 8, 17, 20, 168, 190
BspANI GGCC 1 cut(s) 225
BspCNI CTCAG 1 cut(s) 31
BspLI GGNNCC 3 cut(s) 6, 166, 232
BspQI GCTCTTC 1 cut(s) 180
BspT107I GGYRCC 2 cut(s) 164, 230
BsrDI GCAATG 1 cut(s) 12
BsrI ACTGG 3 cut(s) 73, 202, 235
BssECI CCNNGG 2 cut(s) 56, 226
BssT1I CCWWGG 1 cut(s) 56
Bst2UI CCWGG 2 cut(s) 222, 228
Bst6I CTCTTC 1 cut(s) 180
BstC8I GCNNGC 2 cut(s) 126, 192
BstDEI CTNAG 2 cut(s) 39, 213
BstF5I GGATG 1 cut(s) 142
BstHHI GCGC 1 cut(s) 244
BstMAI GTCTC 1 cut(s) 35
BstMCI CGRYCG 1 cut(s) 24
BstMWI GCNNNNNNNGC 3 cut(s) 125, 239, 248
BstNI CCWGG 2 cut(s) 222, 228
BstSCI CCNGG 2 cut(s) 220, 226
BstSLI GKGCMC 1 cut(s) 235
BstV1I GCAGC 4 cut(s) 128, 140, 157, 174
BstV2I GAAGAC 1 cut(s) 96
BsuRI GGCC 1 cut(s) 225
BtsCI GGATG 1 cut(s) 142
BtsIMutI CAGTG 1 cut(s) 66
Cac8I GCNNGC 2 cut(s) 126, 192
CfoI GCGC 1 cut(s) 244
Cfr13I GGNCC 2 cut(s) 4, 224
Csp6I GTAC 2 cut(s) 46, 165
CviJI RGCY 4 cut(s) 89, 119, 187, 225
CviKI_1 RGCY 4 cut(s) 89, 119, 187, 225
CviQI GTAC 2 cut(s) 46, 165
DdeI CTNAG 2 cut(s) 39, 213
Eam1104I CTCTTC 1 cut(s) 180
EarI CTCTTC 1 cut(s) 180
Eco130I CCWWGG 1 cut(s) 56
Eco47I GGWCC 1 cut(s) 4
EcoRII CCWGG 2 cut(s) 220, 226
EcoT14I CCWWGG 1 cut(s) 56
ErhI CCWWGG 1 cut(s) 56
Esp3I CGTCTC 1 cut(s) 35
FaiI YATR 4 cut(s) 77, 112, 122, 284
FaqI GGGAC 1 cut(s) 38
FauI CCCGC 2 cut(s) 15, 183
FblI GTMKAC 1 cut(s) 24
Fnu4HI GCNGC 5 cut(s) 18, 117, 129, 171, 188
FokI GGATG 1 cut(s) 149
Fsp4HI GCNGC 5 cut(s) 18, 117, 129, 171, 188
GlaI GCGC 1 cut(s) 243
GluI GCNGC 5 cut(s) 18, 117, 129, 171, 188
HaeIII GGCC 1 cut(s) 225
HhaI GCGC 1 cut(s) 244
Hin6I GCGC 1 cut(s) 242
HinP1I GCGC 1 cut(s) 242
HincII GTYRAC 2 cut(s) 25, 36
HindII GTYRAC 2 cut(s) 25, 36
HinfI GANTC 2 cut(s) 51, 101
HphI GGTGA 1 cut(s) 94
Hpy166II GTNNAC 2 cut(s) 25, 36
Hpy188III TCNNGA 1 cut(s) 264
Hpy8I GTNNAC 2 cut(s) 25, 36
HpyAV CCTTC 1 cut(s) 73
HpyCH4IV ACGT 1 cut(s) 44
HpyCH4V TGCA 2 cut(s) 128, 153
HpyF10VI GCNNNNNNNGC 3 cut(s) 125, 239, 248
HpyF3I CTNAG 2 cut(s) 39, 213
HpySE526I ACGT 1 cut(s) 44
HspAI GCGC 1 cut(s) 242
KpnI GGTACC 1 cut(s) 168
LguI GCTCTTC 1 cut(s) 180
LmnI GCTCC 1 cut(s) 249
LpnPI CCDG 9 cut(s) 54, 119, 183, 207, 213, 234, 240, 248, 249
Lsp1109I GCAGC 4 cut(s) 128, 140, 157, 174
LweI GCATC 1 cut(s) 140
MaeII ACGT 1 cut(s) 44
MaeIII GTNAC 1 cut(s) 287
MboII GAAGA 2 cut(s) 96, 167
MhlI GDGCHC 2 cut(s) 235, 253
MluCI AATT 3 cut(s) 158, 273, 298
MlyI GAGTC 2 cut(s) 60, 110
MseI TTAA 2 cut(s) 183, 304
MspA1I CMGCKG 1 cut(s) 170
MspR9I CCNGG 2 cut(s) 222, 228
MvaI CCWGG 2 cut(s) 222, 228
MwoI GCNNNNNNNGC 3 cut(s) 125, 239, 248
NlaIV GGNNCC 3 cut(s) 6, 166, 232
PciSI GCTCTTC 1 cut(s) 180
PkrI GCNGC 5 cut(s) 19, 118, 130, 172, 189
PleI GAGTC 2 cut(s) 59, 109
PpsI GAGTC 2 cut(s) 59, 109
Psp6I CCWGG 2 cut(s) 220, 226
PspGI CCWGG 2 cut(s) 220, 226
PspN4I GGNNCC 3 cut(s) 6, 166, 232
PspPI GGNCC 2 cut(s) 4, 224
RsaI GTAC 2 cut(s) 47, 166
RsaNI GTAC 2 cut(s) 46, 165
SalI GTCGAC 1 cut(s) 23
SapI GCTCTTC 1 cut(s) 180
SaqAI TTAA 2 cut(s) 183, 304
SatI GCNGC 5 cut(s) 18, 117, 129, 171, 188
Sau96I GGNCC 2 cut(s) 4, 224
SchI GAGTC 2 cut(s) 60, 110
ScrFI CCNGG 2 cut(s) 222, 228
SduI GDGCHC 2 cut(s) 235, 253
SetI ASST 6 cut(s) 47, 84, 121, 189, 223, 289
SfaNI GCATC 1 cut(s) 140
SinI GGWCC 1 cut(s) 4
Sse9I AATT 3 cut(s) 158, 273, 298
SsiI CCGC 5 cut(s) 8, 17, 20, 168, 190
StyD4I CCNGG 2 cut(s) 220, 226
StyI CCWWGG 1 cut(s) 56
TaiI ACGT 1 cut(s) 47
TaqI TCGA 1 cut(s) 24
TasI AATT 3 cut(s) 158, 273, 298
TauI GCSGC 1 cut(s) 20
Tru1I TTAA 2 cut(s) 183, 304
Tru9I TTAA 2 cut(s) 183, 304
TscAI CASTG 1 cut(s) 73
TseI GCWGC 4 cut(s) 116, 128, 170, 187
TspDTI ATGAA 1 cut(s) 92
TspGWI ACGGA 1 cut(s) 236
TspRI CASTG 1 cut(s) 73
VpaK11BI GGWCC 1 cut(s) 4
XapI RAATTY 1 cut(s) 298
XmiI GTMKAC 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.