Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0020496

Physical Location & Seq

Genomic Coordinates Forward (+)

29385885 .. 29388494

Gene Structure 2610 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ31435

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGGTGATCGAAGATCTGGTATTAGATACTTCTGTATGGCAAACAGATGAGCTTAGGCACCATAAACCCACACCAGGTGATGAAGCTAGGGCAGGTTTGAACATTGTGGAGCAGTCCCTTTGGAAAGCTGTACCTCATTATTTACATCATGTCAGCGATGCTTTAAAGAAGCACACTGGAAAACCACTTCCATTGAAATGCACACCAATCAGGTATGGGTCTTCAGAGGAGAGGGTTTGGTTTGATCAAGATGGAAATTCCAATGTGACAGCAAAGATTGCAGTTATTTTCAGCGGTCATTACTATTGGCTGCTTGTTATCATGTGGAGACTACCAAAGCATAGCTTCCATTGTTTTTCCTTGCCAATTTCCTTAACAGAATCTGCATATGAGGATCACCAGAGTTGGGATCATCAGTGTTATAATAGGAATCTGGTAAAGCAACAAGCTGCAGCACTTCCAACACAACTTCCAGCTAGAGCCGATCAACCCTCTTGCACTGAATGCAATGTTGGTCATTCTCACTATATCAGAATTGAAATGTTGGTCATTTTAACTGAAGATTGCATTGGGGCAGGAATCTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004611 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0008150 GO:0008152 GO:0008964 GO:0009060 GO:0009987 GO:0015980 GO:0016829 GO:0016830 GO:0016831 GO:0016999 GO:0017144 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0055114 GO:0071704 GO:0072350

KEGG Pathways

Metabolic & Signaling

ko00620 ko00680 ko00710 ko00720 ko01100 ko01120 ko01200 map00620 map00680 map00710 map00720 map01100 map01120 map01200

Pfam Domains

Protein Families

PEPcase

Protein Analysis

195

Amino Acids

22.31

Weight (kDa)

6.2

Isoelectric Point (pI)

56.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PEPcase	PF00311	11 - 94	1.9e-17	Phosphoenolpyruvate carboxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0020496)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0135881 RchiOBHm_Chr2g0155341 RchiOBHm_Chr4g0407131 RchiOBHm_Chr5g0035491 RchiOBHm_Chr5g0035591 RchiOBHm_Chr5g0035851

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	423
Acc36I	ACCTGC	1 cut(s)	83
AccB1I	GGYRCC	1 cut(s)	57
AciI	CCGC	1 cut(s)	294
AclWI	GGATC	2 cut(s)	402, 417
AcsI	RAATTY	1 cut(s)	256
AcuI	CTGAAG	2 cut(s)	207, 579
AdeI	CACNNNGTG	1 cut(s)	77
AfaI	GTAC	1 cut(s)	132
AfiI	CCNNNNNNNGG	2 cut(s)	74, 406
AgsI	TTSAA	3 cut(s)	100, 196, 539
AjnI	CCWGG	1 cut(s)	73
AjuI	GAANNNNNNNTTGG	4 cut(s)	495, 527, 552, 584
AluBI	AGCT	6 cut(s)	52, 86, 128, 345, 449, 476
AluI	AGCT	6 cut(s)	52, 86, 128, 345, 449, 476
Alw26I	GTCTC	1 cut(s)	322
AlwI	GGATC	2 cut(s)	402, 417
AlwNI	CAGNNNCTG	1 cut(s)	383
ApeKI	GCWGC	3 cut(s)	310, 449, 452
ApoI	RAATTY	1 cut(s)	256
AsuHPI	GGTGA	3 cut(s)	16, 89, 389
BaeI	ACNNNNGTAYC	2 cut(s)	18, 51
BanI	GGYRCC	1 cut(s)	57
BbsI	GAAGAC	1 cut(s)	213
BbvI	GCAGC	3 cut(s)	297, 436, 464
BccI	CCATC	1 cut(s)	245
BciT130I	CCWGG	1 cut(s)	75
BclI	TGATCA	1 cut(s)	244
BcoDI	GTCTC	1 cut(s)	322
BfaI	CTAG	2 cut(s)	87, 477
BfmI	CTRYAG	1 cut(s)	450
BfuAI	ACCTGC	1 cut(s)	83
BglII	AGATCT	1 cut(s)	13
BisI	GCNGC	3 cut(s)	311, 450, 453
BlsI	GCNGC	3 cut(s)	312, 451, 454
Bme1390I	CCNGG	1 cut(s)	75
BmiI	GGNNCC	1 cut(s)	59
BmrFI	CCNGG	1 cut(s)	75
BmsI	GCATC	1 cut(s)	148
BpiI	GAAGAC	1 cut(s)	213
Bpu10I	CCTNAGC	1 cut(s)	53
Bsc4I	CCNNNNNNNGG	2 cut(s)	74, 406
Bse1I	ACTGG	1 cut(s)	181
Bse3DI	GCAATG	1 cut(s)	514
BseBI	CCWGG	1 cut(s)	75
BseLI	CCNNNNNNNGG	2 cut(s)	74, 406
BseMI	GCAATG	1 cut(s)	514
BseNI	ACTGG	1 cut(s)	181
BseRI	GAGGAG	1 cut(s)	242
BseXI	GCAGC	3 cut(s)	297, 436, 464
BshNI	GGYRCC	1 cut(s)	57
BslFI	GGGAC	1 cut(s)	100
BslI	CCNNNNNNNGG	2 cut(s)	74, 406
BsmAI	GTCTC	1 cut(s)	322
BsmFI	GGGAC	1 cut(s)	100
BsmI	GAATGC	1 cut(s)	509
Bsp143I	GATC	6 cut(s)	6, 13, 244, 394, 409, 484
BspACI	CCGC	1 cut(s)	294
BspLI	GGNNCC	1 cut(s)	59
BspMAI	CTGCAG	1 cut(s)	454
BspMI	ACCTGC	1 cut(s)	83
BspPI	GGATC	2 cut(s)	402, 417
BspT107I	GGYRCC	1 cut(s)	57
BsrDI	GCAATG	1 cut(s)	514
BsrI	ACTGG	1 cut(s)	181
BssMI	GATC	6 cut(s)	6, 13, 244, 394, 409, 484
Bst2UI	CCWGG	1 cut(s)	75
BstAPI	GCANNNNNTGC	2 cut(s)	278, 504
BstDEI	CTNAG	1 cut(s)	53
BstKTI	GATC	6 cut(s)	9, 16, 247, 397, 412, 487
BstMAI	GTCTC	1 cut(s)	322
BstMBI	GATC	6 cut(s)	6, 13, 244, 394, 409, 484
BstMWI	GCNNNNNNNGC	2 cut(s)	278, 504
BstNI	CCWGG	1 cut(s)	75
BstSCI	CCNGG	1 cut(s)	73
BstSFI	CTRYAG	1 cut(s)	450
BstV1I	GCAGC	3 cut(s)	297, 436, 464
BstV2I	GAAGAC	1 cut(s)	213
BstX2I	RGATCY	1 cut(s)	13
BstYI	RGATCY	1 cut(s)	13
BtgZI	GCGATG	1 cut(s)	171
BtsIMutI	CAGTG	3 cut(s)	174, 422, 498
BveI	ACCTGC	1 cut(s)	83
CaiI	CAGNNNCTG	1 cut(s)	383
CsiI	ACCWGGT	1 cut(s)	73
Csp6I	GTAC	1 cut(s)	131
CspCI	CAANNNNNGTGG	2 cut(s)	174, 209
CviAII	CATG	2 cut(s)	149, 322
CviJI	RGCY	8 cut(s)	52, 86, 128, 310, 345, 449, 476, 482
CviKI_1	RGCY	8 cut(s)	52, 86, 128, 310, 345, 449, 476, 482
CviQI	GTAC	1 cut(s)	131
DdeI	CTNAG	1 cut(s)	53
DpnI	GATC	6 cut(s)	8, 15, 246, 396, 411, 486
DpnII	GATC	6 cut(s)	6, 13, 244, 394, 409, 484
DraI	TTTAAA	1 cut(s)	165
DraIII	CACNNNGTG	1 cut(s)	77
Eco57I	CTGAAG	2 cut(s)	207, 579
EcoRII	CCWGG	1 cut(s)	73
FaeI	CATG	2 cut(s)	152, 325
FalI	AAGNNNNNCTT	2 cut(s)	329, 361
FaqI	GGGAC	1 cut(s)	100
FatI	CATG	2 cut(s)	148, 321
FauNDI	CATATG	1 cut(s)	388
FbaI	TGATCA	1 cut(s)	244
Fnu4HI	GCNGC	3 cut(s)	311, 450, 453
Fsp4HI	GCNGC	3 cut(s)	311, 450, 453
FspBI	CTAG	2 cut(s)	87, 477
GluI	GCNGC	3 cut(s)	311, 450, 453
Hin1II	CATG	2 cut(s)	152, 325
HinfI	GANTC	3 cut(s)	380, 430, 579
HphI	GGTGA	3 cut(s)	16, 89, 389
Hpy188I	TCNGA	2 cut(s)	226, 533
Hpy188III	TCNNGA	1 cut(s)	248
HpyCH4V	TGCA	7 cut(s)	201, 281, 386, 452, 498, 507, 567
HpyF10VI	GCNNNNNNNGC	2 cut(s)	278, 504
HpyF3I	CTNAG	1 cut(s)	53
Hsp92II	CATG	2 cut(s)	152, 325
Ksp22I	TGATCA	1 cut(s)	244
Kzo9I	GATC	6 cut(s)	6, 13, 244, 394, 409, 484
LmnI	GCTCC	1 cut(s)	109
Lsp1109I	GCAGC	3 cut(s)	297, 436, 464
LweI	GCATC	1 cut(s)	148
MabI	ACCWGGT	1 cut(s)	73
MaeI	CTAG	2 cut(s)	87, 477
MaeIII	GTNAC	1 cut(s)	265
MalI	GATC	6 cut(s)	8, 15, 246, 396, 411, 486
MboI	GATC	6 cut(s)	6, 13, 244, 394, 409, 484
MboII	GAAGA	3 cut(s)	23, 213, 572
MflI	RGATCY	1 cut(s)	13
MluCI	AATT	3 cut(s)	256, 366, 534
MmeI	TCCRAC	1 cut(s)	485
MnlI	CCTC	5 cut(s)	144, 220, 225, 385, 502
MseI	TTAA	3 cut(s)	164, 374, 554
MslI	CAYNNNNRTG	1 cut(s)	196
MspA1I	CMGCKG	1 cut(s)	294
MspR9I	CCNGG	1 cut(s)	75
Mva1269I	GAATGC	1 cut(s)	509
MvaI	CCWGG	1 cut(s)	75
MwoI	GCNNNNNNNGC	2 cut(s)	278, 504
NdeI	CATATG	1 cut(s)	388
NdeII	GATC	6 cut(s)	6, 13, 244, 394, 409, 484
NlaIII	CATG	2 cut(s)	152, 325
NlaIV	GGNNCC	1 cut(s)	59
NmuCI	GTSAC	1 cut(s)	265
PctI	GAATGC	1 cut(s)	509
PfeI	GAWTC	3 cut(s)	380, 430, 579
PkrI	GCNGC	3 cut(s)	312, 451, 454
PsiI	TTATAA	1 cut(s)	423
Psp6I	CCWGG	1 cut(s)	73
PspGI	CCWGG	1 cut(s)	73
PspN4I	GGNNCC	1 cut(s)	59
PstI	CTGCAG	1 cut(s)	454
PstNI	CAGNNNCTG	1 cut(s)	383
PsuI	RGATCY	1 cut(s)	13
RsaI	GTAC	1 cut(s)	132
RsaNI	GTAC	1 cut(s)	131
RseI	CAYNNNNRTG	1 cut(s)	196
SaqAI	TTAA	3 cut(s)	164, 374, 554
SatI	GCNGC	3 cut(s)	311, 450, 453
Sau3AI	GATC	6 cut(s)	6, 13, 244, 394, 409, 484
ScrFI	CCNGG	1 cut(s)	75
SexAI	ACCWGGT	1 cut(s)	73
SfaNI	GCATC	1 cut(s)	148
SfcI	CTRYAG	1 cut(s)	450
SmiMI	CAYNNNNRTG	1 cut(s)	196
Sse9I	AATT	3 cut(s)	256, 366, 534
SsiI	CCGC	1 cut(s)	294
SspMI	CTAG	2 cut(s)	87, 477
StyD4I	CCNGG	1 cut(s)	73
TaqI	TCGA	1 cut(s)	9
TasI	AATT	3 cut(s)	256, 366, 534
TfiI	GAWTC	3 cut(s)	380, 430, 579
Tru1I	TTAA	3 cut(s)	164, 374, 554
Tru9I	TTAA	3 cut(s)	164, 374, 554
TscAI	CASTG	3 cut(s)	181, 422, 505
TseFI	GTSAC	1 cut(s)	265
TseI	GCWGC	3 cut(s)	310, 449, 452
Tsp45I	GTSAC	1 cut(s)	265
TspDTI	ATGAA	1 cut(s)	96
TspRI	CASTG	3 cut(s)	181, 422, 505
XapI	RAATTY	1 cut(s)	256
XspI	CTAG	2 cut(s)	87, 477

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.