RchiOBHm_Chr5g0039221

Nucleolar pre-ribosomal-associated protein 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0019417
Physical Location & Seq
Reverse (-)
33920420 .. 33922519
2100 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ31780

Sequence Viewer

Length: 684 bp
ATGAGTGGTGAAAAGCTGTCAAGTTTTATCATGTGGGCAATTTCCAGTGCTGTAGAAGCAGACTCTGCAACTATGCTTCATTCCAATGAATCTCATCAATGTTTCACTACTATTCCAGAGGAAAAAGAGGTGTATAAGAATTCTTTGATTTCAAAACTATTGTGTTGGCTAACTGCAACTGTAATTCTTGGGAAGCTTGACTGGACATCCAGTGACGTGGATCCTGAGTTCTCAAAATGTTTGAATTTAAAAAGTATGCAGTCTTCAATAACTCATGCTGACAAGGCATGTGGAGAAAGGGGCCGAAACGGATATGGTTGTGAAGAGATCTTGGCATCAGCAATTCTGTACCTTCAACAGCTCTCTGGAACAAATTACGAAATGCTCCCGTCTGTCGCTGCTGCCCCCAGTCTTCTCCTTTCCAGTGCCTCCATTTATGCAGGTTTCTTGCATGAAAATGAAACCGTCCAATTGCTTTGGCTGAAGATGCATTGCCCTAATGAAGCTAATCCTGCCTTGAGATGGTCACTTGACCAGCCATGGAAGGATCCGATGTTGGAAGTCACTGATTCCCAGAAGATGGAAGAACTCCATGCTTGTGAATCACCATTTAGTTATATTTTCATATCTGCTAGGAAAACAATCATCAGAATTTCATGTTTCGTCAACACAGTATATAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NopRA1 Npa1

Protein Analysis

227

Amino Acids

25.42

Weight (kDa)

5.25

Isoelectric Point (pI)

49.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019417)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0039171 RchiOBHm_Chr5g0039221
rosa_multiflora Rmu_co8491797.1_g000001 Rmu_sc0000533.1_g000005
rosa_samantha Rh5AG263700 Rh5CG301500 Rh5DG276400
rosa_wichuraiana Rw5G024730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 431
AccB7I CCANNNNNTGG 1 cut(s) 580
AclWI GGATC 4 cut(s) 215, 228, 542, 555
AcsI RAATTY 3 cut(s) 139, 244, 651
AcuI CTGAAG 1 cut(s) 503
AfaI GTAC 1 cut(s) 350
AfiI CCNNNNNNNGG 2 cut(s) 522, 580
AgsI TTSAA 4 cut(s) 153, 244, 267, 356
AjiI CACGTC 1 cut(s) 217
AloI GAACNNNNNNTCC 2 cut(s) 212, 244
AluBI AGCT 4 cut(s) 16, 196, 361, 506
AluI AGCT 4 cut(s) 16, 196, 361, 506
AlwI GGATC 4 cut(s) 215, 228, 542, 555
AlwNI CAGNNNCTG 1 cut(s) 65
AoxI GGCC 1 cut(s) 301
ApeKI GCWGC 2 cut(s) 398, 401
ApoI RAATTY 3 cut(s) 139, 244, 651
AspS9I GGNCC 1 cut(s) 301
AsuHPI GGTGA 2 cut(s) 20, 597
BamHI GGATCC 2 cut(s) 220, 547
BarI GAAGNNNNNNTAC 2 cut(s) 247, 279
BbsI GAAGAC 2 cut(s) 255, 404
BbvI GCAGC 2 cut(s) 385, 388
BccI CCATC 2 cut(s) 516, 574
BfaI CTAG 1 cut(s) 633
BfmI CTRYAG 1 cut(s) 51
BfuAI ACCTGC 1 cut(s) 431
BglII AGATCT 1 cut(s) 327
BisI GCNGC 2 cut(s) 399, 402
BlsI GCNGC 2 cut(s) 400, 403
BmgBI CACGTC 1 cut(s) 217
BmgT120I GGNCC 1 cut(s) 301
BmiI GGNNCC 3 cut(s) 222, 302, 549
BmrI ACTGGG 1 cut(s) 402
BmsI GCATC 2 cut(s) 344, 477
BmuI ACTGGG 1 cut(s) 402
BpiI GAAGAC 2 cut(s) 255, 404
BpuEI CTTGAG 1 cut(s) 538
BsaJI CCNNGG 1 cut(s) 539
Bsc4I CCNNNNNNNGG 2 cut(s) 522, 580
Bse1I ACTGG 5 cut(s) 45, 206, 210, 408, 423
Bse3DI GCAATG 1 cut(s) 490
BseDI CCNNGG 1 cut(s) 539
BseGI GGATG 1 cut(s) 206
BseLI CCNNNNNNNGG 2 cut(s) 522, 580
BseMI GCAATG 1 cut(s) 490
BseMII CTCAG 1 cut(s) 216
BseNI ACTGG 5 cut(s) 45, 206, 210, 408, 423
BseXI GCAGC 2 cut(s) 385, 388
BshFI GGCC 1 cut(s) 303
BslI CCNNNNNNNGG 2 cut(s) 522, 580
BsnI GGCC 1 cut(s) 303
Bsp143I GATC 3 cut(s) 220, 327, 547
Bsp19I CCATGG 1 cut(s) 539
BspANI GGCC 1 cut(s) 303
BspCNI CTCAG 1 cut(s) 217
BspLI GGNNCC 3 cut(s) 222, 302, 549
BspMI ACCTGC 1 cut(s) 431
BspPI GGATC 4 cut(s) 215, 228, 542, 555
BsrDI GCAATG 1 cut(s) 490
BsrI ACTGG 5 cut(s) 45, 206, 210, 408, 423
BssECI CCNNGG 1 cut(s) 539
BssMI GATC 3 cut(s) 220, 327, 547
BssT1I CCWWGG 1 cut(s) 539
Bst4CI ACNGT 3 cut(s) 181, 466, 673
Bst6I CTCTTC 1 cut(s) 318
BstAPI GCANNNNNTGC 1 cut(s) 65
BstDEI CTNAG 1 cut(s) 225
BstDSI CCRYGG 1 cut(s) 539
BstF5I GGATG 1 cut(s) 206
BstKTI GATC 3 cut(s) 223, 330, 550
BstMBI GATC 3 cut(s) 220, 327, 547
BstMWI GCNNNNNNNGC 5 cut(s) 56, 65, 284, 487, 512
BstNSI RCATGY 1 cut(s) 291
BstSFI CTRYAG 1 cut(s) 51
BstV1I GCAGC 2 cut(s) 385, 388
BstV2I GAAGAC 2 cut(s) 255, 404
BstX2I RGATCY 3 cut(s) 220, 327, 547
BstXI CCANNNNNNTGG 1 cut(s) 217
BstYI RGATCY 3 cut(s) 220, 327, 547
BsuRI GGCC 1 cut(s) 303
BtgI CCRYGG 1 cut(s) 539
BtrI CACGTC 1 cut(s) 217
BtsCI GGATG 1 cut(s) 206
BtsIMutI CAGTG 4 cut(s) 52, 217, 430, 564
BveI ACCTGC 1 cut(s) 431
CaiI CAGNNNCTG 1 cut(s) 65
Cfr13I GGNCC 1 cut(s) 301
Csp6I GTAC 1 cut(s) 349
CspCI CAANNNNNGTGG 2 cut(s) 271, 306
CviAII CATG 7 cut(s) 31, 275, 288, 452, 540, 593, 657
CviJI RGCY 8 cut(s) 16, 169, 196, 303, 361, 481, 506, 538
CviKI_1 RGCY 8 cut(s) 16, 169, 196, 303, 361, 481, 506, 538
CviQI GTAC 1 cut(s) 349
DdeI CTNAG 1 cut(s) 225
DpnI GATC 3 cut(s) 222, 329, 549
DpnII GATC 3 cut(s) 220, 327, 547
DraI TTTAAA 1 cut(s) 249
Eam1104I CTCTTC 1 cut(s) 318
EarI CTCTTC 1 cut(s) 318
Eco130I CCWWGG 1 cut(s) 539
Eco57I CTGAAG 1 cut(s) 503
EcoRI GAATTC 1 cut(s) 139
EcoT14I CCWWGG 1 cut(s) 539
EcoT22I ATGCAT 1 cut(s) 492
ErhI CCWWGG 1 cut(s) 539
FaeI CATG 7 cut(s) 34, 278, 291, 455, 543, 596, 660
FatI CATG 7 cut(s) 30, 274, 287, 451, 539, 592, 656
Fnu4HI GCNGC 2 cut(s) 399, 402
FokI GGATG 1 cut(s) 193
Fsp4HI GCNGC 2 cut(s) 399, 402
FspBI CTAG 1 cut(s) 633
GluI GCNGC 2 cut(s) 399, 402
HaeIII GGCC 1 cut(s) 303
Hin1II CATG 7 cut(s) 34, 278, 291, 455, 543, 596, 660
HincII GTYRAC 1 cut(s) 667
HindII GTYRAC 1 cut(s) 667
HindIII AAGCTT 1 cut(s) 194
HinfI GANTC 4 cut(s) 62, 89, 569, 602
HphI GGTGA 2 cut(s) 20, 597
Hpy166II GTNNAC 1 cut(s) 667
Hpy188I TCNGA 2 cut(s) 552, 650
Hpy188III TCNNGA 3 cut(s) 116, 224, 366
Hpy8I GTNNAC 1 cut(s) 667
HpyAV CCTTC 2 cut(s) 362, 538
HpyCH4III ACNGT 3 cut(s) 181, 466, 673
HpyCH4IV ACGT 1 cut(s) 216
HpyCH4V TGCA 6 cut(s) 68, 176, 259, 440, 451, 490
HpyF10VI GCNNNNNNNGC 5 cut(s) 56, 65, 284, 487, 512
HpyF3I CTNAG 1 cut(s) 225
HpySE526I ACGT 1 cut(s) 216
Hsp92II CATG 7 cut(s) 34, 278, 291, 455, 543, 596, 660
Kzo9I GATC 3 cut(s) 220, 327, 547
LmnI GCTCC 1 cut(s) 390
Lsp1109I GCAGC 2 cut(s) 385, 388
LweI GCATC 2 cut(s) 344, 477
MaeI CTAG 1 cut(s) 633
MaeII ACGT 1 cut(s) 216
MaeIII GTNAC 3 cut(s) 212, 525, 562
MalI GATC 3 cut(s) 222, 329, 549
MboI GATC 3 cut(s) 220, 327, 547
MboII GAAGA 6 cut(s) 255, 335, 404, 496, 589, 596
MfeI CAATTG 1 cut(s) 470
MflI RGATCY 3 cut(s) 220, 327, 547
MluCI AATT 8 cut(s) 39, 139, 183, 244, 342, 373, 470, 651
MlyI GAGTC 1 cut(s) 56
MmeI TCCRAC 1 cut(s) 537
MnlI CCTC 3 cut(s) 112, 121, 439
Mph1103I ATGCAT 1 cut(s) 492
MseI TTAA 1 cut(s) 248
MslI CAYNNNNRTG 3 cut(s) 84, 456, 597
MunI CAATTG 1 cut(s) 470
MwoI GCNNNNNNNGC 5 cut(s) 56, 65, 284, 487, 512
NcoI CCATGG 1 cut(s) 539
NdeII GATC 3 cut(s) 220, 327, 547
NlaIII CATG 7 cut(s) 34, 278, 291, 455, 543, 596, 660
NlaIV GGNNCC 3 cut(s) 222, 302, 549
NmuCI GTSAC 3 cut(s) 212, 525, 562
NsiI ATGCAT 1 cut(s) 492
NspI RCATGY 1 cut(s) 291
PfeI GAWTC 3 cut(s) 89, 569, 602
PflMI CCANNNNNTGG 1 cut(s) 580
PkrI GCNGC 2 cut(s) 400, 403
PleI GAGTC 1 cut(s) 56
PpsI GAGTC 1 cut(s) 56
PspN4I GGNNCC 3 cut(s) 222, 302, 549
PspPI GGNCC 1 cut(s) 301
PstNI CAGNNNCTG 1 cut(s) 65
PsuI RGATCY 3 cut(s) 220, 327, 547
RsaI GTAC 1 cut(s) 350
RsaNI GTAC 1 cut(s) 349
RseI CAYNNNNRTG 3 cut(s) 84, 456, 597
SaqAI TTAA 1 cut(s) 248
SatI GCNGC 2 cut(s) 399, 402
Sau3AI GATC 3 cut(s) 220, 327, 547
Sau96I GGNCC 1 cut(s) 301
SchI GAGTC 1 cut(s) 56
SetI ASST 8 cut(s) 18, 132, 198, 219, 354, 363, 445, 508
SfaNI GCATC 2 cut(s) 344, 477
SfcI CTRYAG 1 cut(s) 51
SmiMI CAYNNNNRTG 3 cut(s) 84, 456, 597
SmlI CTYRAG 1 cut(s) 517
SmoI CTYRAG 1 cut(s) 517
Sse9I AATT 8 cut(s) 39, 139, 183, 244, 342, 373, 470, 651
SspMI CTAG 1 cut(s) 633
StyI CCWWGG 1 cut(s) 539
TaaI ACNGT 3 cut(s) 181, 466, 673
TaiI ACGT 1 cut(s) 219
TasI AATT 8 cut(s) 39, 139, 183, 244, 342, 373, 470, 651
TfiI GAWTC 3 cut(s) 89, 569, 602
Tru1I TTAA 1 cut(s) 248
Tru9I TTAA 1 cut(s) 248
TscAI CASTG 4 cut(s) 52, 217, 430, 571
TseFI GTSAC 3 cut(s) 212, 525, 562
TseI GCWGC 2 cut(s) 398, 401
Tsp45I GTSAC 3 cut(s) 212, 525, 562
TspDTI ATGAA 7 cut(s) 68, 102, 468, 474, 516, 613, 645
TspGWI ACGGA 1 cut(s) 324
TspRI CASTG 4 cut(s) 52, 217, 430, 571
Van91I CCANNNNNTGG 1 cut(s) 580
XapI RAATTY 3 cut(s) 139, 244, 651
XceI RCATGY 1 cut(s) 291
XspI CTAG 1 cut(s) 633
Zsp2I ATGCAT 1 cut(s) 492
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.