Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0019417

Physical Location & Seq

Genomic Coordinates Reverse (-)

33157188 .. 33157709

Gene Structure 522 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG301500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGTTCCAGAGTGGTGAAAAGCTGTCAAGTTTTATCATGTGGGCAATTTCCAGTGTAGAAGCAGACTCTGCAACTATGCTTCATTCCAATGAATCTCATCAATGTTTCACTACTATTCCAGAGGAAAAAGAGGTGTATAAGAATTCTTTGATCTCAAAACTATTGCGTTGGCTAACCGCAACTGTAATTCTTGGGAAGCTTGACTGGACATCCAGTGACGTGGATCCTGAGTTGTCGAAAAGTTTGCAGTCTTTAATAACTCATGCTGACAAGGCATGTGGAGAAAGGGGCCGAAACGGATATGGTTGTAAAGAGATCTTGGCATCAGCAATTCTCTACCTTCAACAGCTCTCTGGAACTAATTACGAAATGCTACCATCTGTCACTGCTGCCCTTAGTCTTCTCCTTTCCAATGCCTCCATTTACGCAGGTATCATACATTTGATTGATTATGCATTTGGCATCTGTCGGTTGAGTGTTTCAGTAGAACATGGGGGAGTGGGGAGTTGGGTCCAGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NopRA1 Npa1

Protein Analysis

173

Amino Acids

18.94

Weight (kDa)

5.32

Isoelectric Point (pI)

34.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019417)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0039171 RchiOBHm_Chr5g0039221
rosa_multiflora	Rmu_co8491797.1_g000001 Rmu_sc0000533.1_g000005
rosa_samantha	Rh5AG263700 Rh5CG301500 Rh5DG276400
rosa_wichuraiana	Rw5G024730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	419
AciI	CCGC	1 cut(s)	177
AclWI	GGATC	2 cut(s)	218, 231
AcsI	RAATTY	1 cut(s)	142
AgsI	TTSAA	1 cut(s)	344
AjiI	CACGTC	1 cut(s)	220
AjnI	CCWGG	1 cut(s)	513
AluBI	AGCT	3 cut(s)	22, 199, 349
AluI	AGCT	3 cut(s)	22, 199, 349
AlwI	GGATC	2 cut(s)	218, 231
AlwNI	CAGNNNCTG	1 cut(s)	68
AoxI	GGCC	1 cut(s)	289
ApeKI	GCWGC	1 cut(s)	389
ApoI	RAATTY	1 cut(s)	142
AspS9I	GGNCC	2 cut(s)	289, 511
AsuHPI	GGTGA	1 cut(s)	26
AvaII	GGWCC	1 cut(s)	511
BaeI	ACNNNNGTAYC	2 cut(s)	415, 448
BamHI	GGATCC	1 cut(s)	223
BbsI	GAAGAC	1 cut(s)	392
BbvI	GCAGC	1 cut(s)	376
BccI	CCATC	1 cut(s)	385
BcgI	CGANNNNNNTGC	2 cut(s)	226, 260
BciT130I	CCWGG	1 cut(s)	515
BfuAI	ACCTGC	1 cut(s)	419
BglII	AGATCT	1 cut(s)	315
BisI	GCNGC	1 cut(s)	390
BlsI	GCNGC	1 cut(s)	391
Bme1390I	CCNGG	1 cut(s)	515
Bme18I	GGWCC	1 cut(s)	511
BmgBI	CACGTC	1 cut(s)	220
BmgT120I	GGNCC	2 cut(s)	289, 511
BmiI	GGNNCC	3 cut(s)	225, 290, 512
BmrFI	CCNGG	1 cut(s)	515
BmsI	GCATC	2 cut(s)	332, 471
BpiI	GAAGAC	1 cut(s)	392
Bse1I	ACTGG	3 cut(s)	51, 209, 213
BseBI	CCWGG	1 cut(s)	515
BseGI	GGATG	1 cut(s)	209
BseMII	CTCAG	1 cut(s)	219
BseNI	ACTGG	3 cut(s)	51, 209, 213
BseXI	GCAGC	1 cut(s)	376
BshFI	GGCC	1 cut(s)	291
BsnI	GGCC	1 cut(s)	291
Bsp143I	GATC	3 cut(s)	150, 223, 315
BspACI	CCGC	1 cut(s)	177
BspANI	GGCC	1 cut(s)	291
BspCNI	CTCAG	1 cut(s)	220
BspLI	GGNNCC	3 cut(s)	225, 290, 512
BspMI	ACCTGC	1 cut(s)	419
BspPI	GGATC	2 cut(s)	218, 231
BsrI	ACTGG	3 cut(s)	51, 209, 213
BssMI	GATC	3 cut(s)	150, 223, 315
Bst2UI	CCWGG	1 cut(s)	515
Bst4CI	ACNGT	1 cut(s)	184
BstAPI	GCANNNNNTGC	1 cut(s)	68
BstDEI	CTNAG	2 cut(s)	228, 395
BstF5I	GGATG	1 cut(s)	209
BstKTI	GATC	3 cut(s)	153, 226, 318
BstMBI	GATC	3 cut(s)	150, 223, 315
BstMWI	GCNNNNNNNGC	2 cut(s)	68, 272
BstNI	CCWGG	1 cut(s)	515
BstNSI	RCATGY	1 cut(s)	279
BstSCI	CCNGG	1 cut(s)	513
BstV1I	GCAGC	1 cut(s)	376
BstV2I	GAAGAC	1 cut(s)	392
BstX2I	RGATCY	2 cut(s)	223, 315
BstXI	CCANNNNNNTGG	1 cut(s)	220
BstYI	RGATCY	2 cut(s)	223, 315
BsuRI	GGCC	1 cut(s)	291
BtrI	CACGTC	1 cut(s)	220
BtsCI	GGATG	1 cut(s)	209
BtsI	GCAGTG	1 cut(s)	384
BtsIMutI	CAGTG	3 cut(s)	58, 220, 384
BveI	ACCTGC	1 cut(s)	419
CaiI	CAGNNNCTG	1 cut(s)	68
Cfr13I	GGNCC	2 cut(s)	289, 511
CspCI	CAANNNNNGTGG	2 cut(s)	259, 294
CviAII	CATG	4 cut(s)	37, 263, 276, 491
CviJI	RGCY	5 cut(s)	22, 172, 199, 291, 349
CviKI_1	RGCY	5 cut(s)	22, 172, 199, 291, 349
DdeI	CTNAG	2 cut(s)	228, 395
DpnI	GATC	3 cut(s)	152, 225, 317
DpnII	GATC	3 cut(s)	150, 223, 315
Eco47I	GGWCC	1 cut(s)	511
EcoRI	GAATTC	1 cut(s)	142
EcoRII	CCWGG	1 cut(s)	513
EcoT22I	ATGCAT	1 cut(s)	457
FaeI	CATG	4 cut(s)	40, 266, 279, 494
FaiI	YATR	9 cut(s)	38, 77, 138, 264, 277, 303, 437, 453, 492
FatI	CATG	4 cut(s)	36, 262, 275, 490
Fnu4HI	GCNGC	1 cut(s)	390
FokI	GGATG	1 cut(s)	196
Fsp4HI	GCNGC	1 cut(s)	390
GluI	GCNGC	1 cut(s)	390
HaeIII	GGCC	1 cut(s)	291
Hin1II	CATG	4 cut(s)	40, 266, 279, 494
HindIII	AAGCTT	1 cut(s)	197
HinfI	GANTC	2 cut(s)	65, 92
HphI	GGTGA	1 cut(s)	26
Hpy188III	TCNNGA	4 cut(s)	7, 119, 227, 354
HpyAV	CCTTC	1 cut(s)	350
HpyCH4III	ACNGT	1 cut(s)	184
HpyCH4IV	ACGT	1 cut(s)	219
HpyCH4V	TGCA	3 cut(s)	71, 247, 455
HpyF10VI	GCNNNNNNNGC	2 cut(s)	68, 272
HpyF3I	CTNAG	2 cut(s)	228, 395
HpySE526I	ACGT	1 cut(s)	219
Hsp92II	CATG	4 cut(s)	40, 266, 279, 494
Kzo9I	GATC	3 cut(s)	150, 223, 315
LpnPI	CCDG	9 cut(s)	20, 64, 132, 190, 226, 240, 339, 414, 500
Lsp1109I	GCAGC	1 cut(s)	376
LweI	GCATC	2 cut(s)	332, 471
MaeII	ACGT	1 cut(s)	219
MaeIII	GTNAC	2 cut(s)	215, 382
MalI	GATC	3 cut(s)	152, 225, 317
MboI	GATC	3 cut(s)	150, 223, 315
MboII	GAAGA	1 cut(s)	392
MflI	RGATCY	2 cut(s)	223, 315
MluCI	AATT	5 cut(s)	45, 142, 186, 330, 361
MlyI	GAGTC	1 cut(s)	59
MnlI	CCTC	3 cut(s)	115, 124, 427
Mph1103I	ATGCAT	1 cut(s)	457
MseI	TTAA	1 cut(s)	254
MslI	CAYNNNNRTG	1 cut(s)	87
MspR9I	CCNGG	1 cut(s)	515
MvaI	CCWGG	1 cut(s)	515
MwoI	GCNNNNNNNGC	2 cut(s)	68, 272
NdeII	GATC	3 cut(s)	150, 223, 315
NlaIII	CATG	4 cut(s)	40, 266, 279, 494
NlaIV	GGNNCC	3 cut(s)	225, 290, 512
NmuCI	GTSAC	2 cut(s)	215, 382
NsiI	ATGCAT	1 cut(s)	457
NspI	RCATGY	1 cut(s)	279
PfeI	GAWTC	1 cut(s)	92
PfoI	TCCNGGA	1 cut(s)	513
PkrI	GCNGC	1 cut(s)	391
PleI	GAGTC	1 cut(s)	59
PpsI	GAGTC	1 cut(s)	59
Psp6I	CCWGG	1 cut(s)	513
PspGI	CCWGG	1 cut(s)	513
PspN4I	GGNNCC	3 cut(s)	225, 290, 512
PspPI	GGNCC	2 cut(s)	289, 511
PstNI	CAGNNNCTG	1 cut(s)	68
PsuI	RGATCY	2 cut(s)	223, 315
RseI	CAYNNNNRTG	1 cut(s)	87
SaqAI	TTAA	1 cut(s)	254
SatI	GCNGC	1 cut(s)	390
Sau3AI	GATC	3 cut(s)	150, 223, 315
Sau96I	GGNCC	2 cut(s)	289, 511
SchI	GAGTC	1 cut(s)	59
ScrFI	CCNGG	1 cut(s)	515
SetI	ASST	7 cut(s)	24, 135, 201, 222, 342, 351, 433
SfaNI	GCATC	2 cut(s)	332, 471
SinI	GGWCC	1 cut(s)	511
SmiMI	CAYNNNNRTG	1 cut(s)	87
Sse9I	AATT	5 cut(s)	45, 142, 186, 330, 361
SsiI	CCGC	1 cut(s)	177
StyD4I	CCNGG	1 cut(s)	513
TaaI	ACNGT	1 cut(s)	184
TaiI	ACGT	1 cut(s)	222
TaqI	TCGA	1 cut(s)	236
TasI	AATT	5 cut(s)	45, 142, 186, 330, 361
TfiI	GAWTC	1 cut(s)	92
Tru1I	TTAA	1 cut(s)	254
Tru9I	TTAA	1 cut(s)	254
TscAI	CASTG	3 cut(s)	58, 220, 391
TseFI	GTSAC	2 cut(s)	215, 382
TseI	GCWGC	1 cut(s)	389
Tsp45I	GTSAC	2 cut(s)	215, 382
TspDTI	ATGAA	2 cut(s)	71, 105
TspGWI	ACGGA	1 cut(s)	312
TspRI	CASTG	3 cut(s)	58, 220, 391
VpaK11BI	GGWCC	1 cut(s)	511
XapI	RAATTY	1 cut(s)	142
XceI	RCATGY	1 cut(s)	279
Zsp2I	ATGCAT	1 cut(s)	457

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.