Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0019417

Physical Location & Seq

Genomic Coordinates Reverse (-)

33812258 .. 33813689

Gene Structure 1432 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG276400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGTTCCAGAGTGGTGAAAAGCTGTCAAGTTTTATCATGTGGGAAATTTCCAGTGCTGTCGAAGCAGACTCTGCAACTATGCTTTATTCCAATGAATCTCATCAATGTTTCACTACTATTACAGAGGGAAAAGTGGTGTATAAGAATTCTTTGATTTCAAAACTATTGTGTTGGCTAACTGGAACTGTAATTCTTGGGAAGCTTGACTGGACATCCAGTGACGTGGATCCTGAGTTCTCGAAAAGTTTGCAGTCTTTAATAACTCATGCTGACAAGGCATGTGGAGAAAGGGGCCGAAACGGATATGGTTGTGAAGAGATCTTGGCATCAGCAATTCTCTACCTTCAACAGCTCTCTGGAACAAATTACGAAATGCTACCATCTGTCACTGCTGCCCTTAGTCTTGTCCTTTCCAATGCCTCCATTTATGCAGGTTTCTTGCATGATAATGAACCTGTCCAATCACTTTGGTGGAAGATACGTTGCCCTAATGAAGCTAATCCTGGCTGGAGATGGTCATTTGACCAGCCATGGAAGGATCCGATGTTGGAAAGTCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NopRA1 Npa1

Protein Analysis

186

Amino Acids

20.84

Weight (kDa)

4.91

Isoelectric Point (pI)

41.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019417)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0039171 RchiOBHm_Chr5g0039221
rosa_multiflora	Rmu_co8491797.1_g000001 Rmu_sc0000533.1_g000005
rosa_samantha	Rh5AG263700 Rh5CG301500 Rh5DG276400
rosa_wichuraiana	Rw5G024730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	422
AclWI	GGATC	4 cut(s)	221, 234, 533, 546
AcsI	RAATTY	2 cut(s)	45, 145
AgsI	TTSAA	2 cut(s)	159, 347
AjiI	CACGTC	1 cut(s)	223
AjnI	CCWGG	1 cut(s)	502
AleI	CACNNNNGTG	1 cut(s)	469
AloI	GAACNNNNNNTCC	2 cut(s)	218, 250
AluBI	AGCT	4 cut(s)	22, 202, 352, 497
AluI	AGCT	4 cut(s)	22, 202, 352, 497
AlwI	GGATC	4 cut(s)	221, 234, 533, 546
AlwNI	CAGNNNCTG	1 cut(s)	71
AoxI	GGCC	1 cut(s)	292
ApeKI	GCWGC	1 cut(s)	392
ApoI	RAATTY	2 cut(s)	45, 145
AspS9I	GGNCC	1 cut(s)	292
AsuHPI	GGTGA	1 cut(s)	26
BamHI	GGATCC	2 cut(s)	226, 538
BbvI	GCAGC	1 cut(s)	379
BccI	CCATC	2 cut(s)	388, 507
BcgI	CGANNNNNNTGC	2 cut(s)	229, 263
BciT130I	CCWGG	1 cut(s)	504
BfuAI	ACCTGC	1 cut(s)	422
BglII	AGATCT	1 cut(s)	318
BisI	GCNGC	1 cut(s)	393
BlsI	GCNGC	1 cut(s)	394
Bme1390I	CCNGG	1 cut(s)	504
BmgBI	CACGTC	1 cut(s)	223
BmgT120I	GGNCC	1 cut(s)	292
BmiI	GGNNCC	3 cut(s)	228, 293, 540
BmrFI	CCNGG	1 cut(s)	504
BmsI	GCATC	1 cut(s)	335
BpmI	CTGGAG	1 cut(s)	529
BsaJI	CCNNGG	1 cut(s)	530
Bse1I	ACTGG	4 cut(s)	51, 184, 212, 216
BseBI	CCWGG	1 cut(s)	504
BseDI	CCNNGG	1 cut(s)	530
BseGI	GGATG	1 cut(s)	212
BseMII	CTCAG	1 cut(s)	222
BseNI	ACTGG	4 cut(s)	51, 184, 212, 216
BseXI	GCAGC	1 cut(s)	379
BshFI	GGCC	1 cut(s)	294
BsnI	GGCC	1 cut(s)	294
Bsp143I	GATC	3 cut(s)	226, 318, 538
Bsp19I	CCATGG	1 cut(s)	530
BspANI	GGCC	1 cut(s)	294
BspCNI	CTCAG	1 cut(s)	223
BspLI	GGNNCC	3 cut(s)	228, 293, 540
BspMI	ACCTGC	1 cut(s)	422
BspPI	GGATC	4 cut(s)	221, 234, 533, 546
BsrI	ACTGG	4 cut(s)	51, 184, 212, 216
BssECI	CCNNGG	1 cut(s)	530
BssMI	GATC	3 cut(s)	226, 318, 538
BssT1I	CCWWGG	1 cut(s)	530
Bst2UI	CCWGG	1 cut(s)	504
Bst4CI	ACNGT	1 cut(s)	187
Bst6I	CTCTTC	1 cut(s)	309
BstAPI	GCANNNNNTGC	1 cut(s)	71
BstDEI	CTNAG	2 cut(s)	231, 398
BstDSI	CCRYGG	1 cut(s)	530
BstF5I	GGATG	1 cut(s)	212
BstKTI	GATC	3 cut(s)	229, 321, 541
BstMBI	GATC	3 cut(s)	226, 318, 538
BstMWI	GCNNNNNNNGC	3 cut(s)	62, 71, 275
BstNI	CCWGG	1 cut(s)	504
BstNSI	RCATGY	1 cut(s)	282
BstSCI	CCNGG	1 cut(s)	502
BstV1I	GCAGC	1 cut(s)	379
BstX2I	RGATCY	3 cut(s)	226, 318, 538
BstXI	CCANNNNNNTGG	1 cut(s)	223
BstYI	RGATCY	3 cut(s)	226, 318, 538
BsuRI	GGCC	1 cut(s)	294
BtgI	CCRYGG	1 cut(s)	530
BtrI	CACGTC	1 cut(s)	223
BtsCI	GGATG	1 cut(s)	212
BtsI	GCAGTG	1 cut(s)	387
BtsIMutI	CAGTG	4 cut(s)	58, 223, 387, 556
BveI	ACCTGC	1 cut(s)	422
CaiI	CAGNNNCTG	1 cut(s)	71
Cfr13I	GGNCC	1 cut(s)	292
CspCI	CAANNNNNGTGG	2 cut(s)	262, 297
CviAII	CATG	5 cut(s)	37, 266, 279, 443, 531
CviJI	RGCY	8 cut(s)	22, 175, 202, 294, 352, 497, 507, 529
CviKI_1	RGCY	8 cut(s)	22, 175, 202, 294, 352, 497, 507, 529
DdeI	CTNAG	2 cut(s)	231, 398
DpnI	GATC	3 cut(s)	228, 320, 540
DpnII	GATC	3 cut(s)	226, 318, 538
Eam1104I	CTCTTC	1 cut(s)	309
EarI	CTCTTC	1 cut(s)	309
Eco130I	CCWWGG	1 cut(s)	530
EcoRI	GAATTC	1 cut(s)	145
EcoRII	CCWGG	1 cut(s)	502
EcoT14I	CCWWGG	1 cut(s)	530
ErhI	CCWWGG	1 cut(s)	530
FaeI	CATG	5 cut(s)	40, 269, 282, 446, 534
FaiI	YATR	9 cut(s)	38, 80, 141, 267, 280, 306, 429, 444, 532
FatI	CATG	5 cut(s)	36, 265, 278, 442, 530
Fnu4HI	GCNGC	1 cut(s)	393
FokI	GGATG	1 cut(s)	199
Fsp4HI	GCNGC	1 cut(s)	393
GluI	GCNGC	1 cut(s)	393
GsuI	CTGGAG	1 cut(s)	529
HaeIII	GGCC	1 cut(s)	294
Hin1II	CATG	5 cut(s)	40, 269, 282, 446, 534
HindIII	AAGCTT	1 cut(s)	200
HinfI	GANTC	2 cut(s)	68, 95
HphI	GGTGA	1 cut(s)	26
Hpy188I	TCNGA	1 cut(s)	543
Hpy188III	TCNNGA	4 cut(s)	7, 230, 238, 357
HpyAV	CCTTC	2 cut(s)	353, 529
HpyCH4III	ACNGT	1 cut(s)	187
HpyCH4IV	ACGT	2 cut(s)	222, 481
HpyCH4V	TGCA	4 cut(s)	74, 250, 431, 442
HpyF10VI	GCNNNNNNNGC	3 cut(s)	62, 71, 275
HpyF3I	CTNAG	2 cut(s)	231, 398
HpySE526I	ACGT	2 cut(s)	222, 481
Hsp92II	CATG	5 cut(s)	40, 269, 282, 446, 534
Kzo9I	GATC	3 cut(s)	226, 318, 538
Lsp1109I	GCAGC	1 cut(s)	379
LweI	GCATC	1 cut(s)	335
MaeII	ACGT	2 cut(s)	222, 481
MaeIII	GTNAC	3 cut(s)	218, 385, 554
MalI	GATC	3 cut(s)	228, 320, 540
MboI	GATC	3 cut(s)	226, 318, 538
MboII	GAAGA	2 cut(s)	326, 487
MflI	RGATCY	3 cut(s)	226, 318, 538
MluCI	AATT	5 cut(s)	45, 145, 189, 333, 364
MlyI	GAGTC	1 cut(s)	62
MmeI	TCCRAC	1 cut(s)	528
MnlI	CCTC	2 cut(s)	118, 430
MseI	TTAA	1 cut(s)	257
MslI	CAYNNNNRTG	2 cut(s)	447, 469
MspR9I	CCNGG	1 cut(s)	504
MvaI	CCWGG	1 cut(s)	504
MwoI	GCNNNNNNNGC	3 cut(s)	62, 71, 275
NcoI	CCATGG	1 cut(s)	530
NdeII	GATC	3 cut(s)	226, 318, 538
NlaIII	CATG	5 cut(s)	40, 269, 282, 446, 534
NlaIV	GGNNCC	3 cut(s)	228, 293, 540
NmuCI	GTSAC	3 cut(s)	218, 385, 554
NspI	RCATGY	1 cut(s)	282
OliI	CACNNNNGTG	1 cut(s)	469
PfeI	GAWTC	1 cut(s)	95
PkrI	GCNGC	1 cut(s)	394
PleI	GAGTC	1 cut(s)	62
PpsI	GAGTC	1 cut(s)	62
Psp6I	CCWGG	1 cut(s)	502
PspGI	CCWGG	1 cut(s)	502
PspN4I	GGNNCC	3 cut(s)	228, 293, 540
PspPI	GGNCC	1 cut(s)	292
PstNI	CAGNNNCTG	1 cut(s)	71
PsuI	RGATCY	3 cut(s)	226, 318, 538
RseI	CAYNNNNRTG	2 cut(s)	447, 469
SaqAI	TTAA	1 cut(s)	257
SatI	GCNGC	1 cut(s)	393
Sau3AI	GATC	3 cut(s)	226, 318, 538
Sau96I	GGNCC	1 cut(s)	292
SchI	GAGTC	1 cut(s)	62
ScrFI	CCNGG	1 cut(s)	504
SetI	ASST	9 cut(s)	24, 204, 225, 345, 354, 436, 457, 484, 499
SfaNI	GCATC	1 cut(s)	335
SmiMI	CAYNNNNRTG	2 cut(s)	447, 469
Sse9I	AATT	5 cut(s)	45, 145, 189, 333, 364
StyD4I	CCNGG	1 cut(s)	502
StyI	CCWWGG	1 cut(s)	530
TaaI	ACNGT	1 cut(s)	187
TaiI	ACGT	2 cut(s)	225, 484
TaqI	TCGA	2 cut(s)	60, 239
TasI	AATT	5 cut(s)	45, 145, 189, 333, 364
TfiI	GAWTC	1 cut(s)	95
Tru1I	TTAA	1 cut(s)	257
Tru9I	TTAA	1 cut(s)	257
TscAI	CASTG	3 cut(s)	58, 223, 394
TseFI	GTSAC	3 cut(s)	218, 385, 554
TseI	GCWGC	1 cut(s)	392
Tsp45I	GTSAC	3 cut(s)	218, 385, 554
TspDTI	ATGAA	3 cut(s)	108, 465, 507
TspGWI	ACGGA	1 cut(s)	315
TspRI	CASTG	3 cut(s)	58, 223, 394
XapI	RAATTY	2 cut(s)	45, 145
XceI	RCATGY	1 cut(s)	282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.