Rh5AG263700

Nucleolar pre-ribosomal-associated protein 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0019417
Physical Location & Seq
Reverse (-)
34644250 .. 34646206
1957 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG263700.1

Sequence Viewer

Length: 558 bp
ATGTTGGACAAGAGTGGTGAAAAGCTGTCAAGTTTTATCATGTGGGAAATTTCCAGTACTGTCGAAGCAGACTCTGCGACTATGCTTCATTCCAATGAATCTCATCAATGTTTCACTACTATTACAGAGGAAAAAGAGGTGTATAAGAATTCTTTGATTTCAAAACTATTGTGTTGGGTGACTGGAACTGTAATTCTTGGGAAGCTTGACTGGACATCCAGTGACGTGGATCCTGAGTTCTCGAAAAGTTTGCAGTCTTTAATAACTCATGCTGACAAGGCATGTGGAGAAAGGGGCCGAAACGGATATGGTTGTGAAGAGATCTTGGCATCAGCAATTCTCTACCTTCAACAGCTCTCTGGAACAAATTACGAAATGCTACCATCTGTCACTGCTGCCCTTAGTCTTCTCCTTTCCAATGCCTCCATTTATGCAGGTCATTTGACCAGCCATGGAAGGATCCGATGTTGGAAAGTCACTAATTCCCAGAAGATGGAGGAACTCAATGCTTGTGAATCACTTTTAGTTATATTTTCAAATCTGCTAGGAAAACAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NopRA1 Npa1

Protein Analysis

185

Amino Acids

20.43

Weight (kDa)

5.35

Isoelectric Point (pI)

35.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019417)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0039171 RchiOBHm_Chr5g0039221
rosa_multiflora Rmu_co8491797.1_g000001 Rmu_sc0000533.1_g000005
rosa_samantha Rh5AG263700 Rh5CG301500 Rh5DG276400
rosa_wichuraiana Rw5G024730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 425
AccB7I CCANNNNNTGG 1 cut(s) 493
AclWI GGATC 4 cut(s) 224, 237, 454, 467
AcsI RAATTY 2 cut(s) 48, 148
AfaI GTAC 1 cut(s) 58
AfiI CCNNNNNNNGG 1 cut(s) 493
AgsI TTSAA 3 cut(s) 162, 350, 537
AjiI CACGTC 1 cut(s) 226
AloI GAACNNNNNNTCC 2 cut(s) 221, 253
AluBI AGCT 3 cut(s) 25, 205, 355
AluI AGCT 3 cut(s) 25, 205, 355
AlwI GGATC 4 cut(s) 224, 237, 454, 467
AlwNI CAGNNNCTG 1 cut(s) 74
AoxI GGCC 1 cut(s) 295
ApeKI GCWGC 1 cut(s) 395
ApoI RAATTY 2 cut(s) 48, 148
AspS9I GGNCC 1 cut(s) 295
AsuHPI GGTGA 2 cut(s) 29, 190
BamHI GGATCC 2 cut(s) 229, 459
BbsI GAAGAC 1 cut(s) 398
BbvI GCAGC 1 cut(s) 382
BccI CCATC 2 cut(s) 391, 487
BcgI CGANNNNNNTGC 2 cut(s) 232, 266
BfaI CTAG 1 cut(s) 545
BfuAI ACCTGC 1 cut(s) 425
BglII AGATCT 1 cut(s) 321
BisI GCNGC 1 cut(s) 396
BlsI GCNGC 1 cut(s) 397
BmcAI AGTACT 1 cut(s) 58
BmgBI CACGTC 1 cut(s) 226
BmgT120I GGNCC 1 cut(s) 295
BmiI GGNNCC 3 cut(s) 231, 296, 461
BmsI GCATC 1 cut(s) 338
BpiI GAAGAC 1 cut(s) 398
BsaJI CCNNGG 1 cut(s) 451
Bsc4I CCNNNNNNNGG 1 cut(s) 493
Bse1I ACTGG 4 cut(s) 54, 187, 215, 219
BseDI CCNNGG 1 cut(s) 451
BseGI GGATG 1 cut(s) 215
BseLI CCNNNNNNNGG 1 cut(s) 493
BseMII CTCAG 1 cut(s) 225
BseNI ACTGG 4 cut(s) 54, 187, 215, 219
BseXI GCAGC 1 cut(s) 382
BshFI GGCC 1 cut(s) 297
BslI CCNNNNNNNGG 1 cut(s) 493
BsnI GGCC 1 cut(s) 297
Bsp143I GATC 3 cut(s) 229, 321, 459
Bsp19I CCATGG 1 cut(s) 451
BspANI GGCC 1 cut(s) 297
BspCNI CTCAG 1 cut(s) 226
BspLI GGNNCC 3 cut(s) 231, 296, 461
BspMI ACCTGC 1 cut(s) 425
BspPI GGATC 4 cut(s) 224, 237, 454, 467
BsrI ACTGG 4 cut(s) 54, 187, 215, 219
BssECI CCNNGG 1 cut(s) 451
BssMI GATC 3 cut(s) 229, 321, 459
BssT1I CCWWGG 1 cut(s) 451
Bst4CI ACNGT 2 cut(s) 61, 190
Bst6I CTCTTC 1 cut(s) 312
BstAPI GCANNNNNTGC 1 cut(s) 74
BstDEI CTNAG 2 cut(s) 234, 401
BstDSI CCRYGG 1 cut(s) 451
BstF5I GGATG 1 cut(s) 215
BstKTI GATC 3 cut(s) 232, 324, 462
BstMBI GATC 3 cut(s) 229, 321, 459
BstMWI GCNNNNNNNGC 2 cut(s) 74, 278
BstNSI RCATGY 1 cut(s) 285
BstV1I GCAGC 1 cut(s) 382
BstV2I GAAGAC 1 cut(s) 398
BstX2I RGATCY 3 cut(s) 229, 321, 459
BstXI CCANNNNNNTGG 1 cut(s) 226
BstYI RGATCY 3 cut(s) 229, 321, 459
BsuRI GGCC 1 cut(s) 297
BtgI CCRYGG 1 cut(s) 451
BtrI CACGTC 1 cut(s) 226
BtsCI GGATG 1 cut(s) 215
BtsI GCAGTG 1 cut(s) 390
BtsIMutI CAGTG 2 cut(s) 226, 390
BveI ACCTGC 1 cut(s) 425
CaiI CAGNNNCTG 1 cut(s) 74
Cfr13I GGNCC 1 cut(s) 295
Csp6I GTAC 1 cut(s) 57
CspCI CAANNNNNGTGG 2 cut(s) 265, 300
CviAII CATG 4 cut(s) 40, 269, 282, 452
CviJI RGCY 5 cut(s) 25, 205, 297, 355, 450
CviKI_1 RGCY 5 cut(s) 25, 205, 297, 355, 450
CviQI GTAC 1 cut(s) 57
DdeI CTNAG 2 cut(s) 234, 401
DpnI GATC 3 cut(s) 231, 323, 461
DpnII GATC 3 cut(s) 229, 321, 459
Eam1104I CTCTTC 1 cut(s) 312
EarI CTCTTC 1 cut(s) 312
Eco130I CCWWGG 1 cut(s) 451
EcoRI GAATTC 1 cut(s) 148
EcoT14I CCWWGG 1 cut(s) 451
ErhI CCWWGG 1 cut(s) 451
FaeI CATG 4 cut(s) 43, 272, 285, 455
FaiI YATR 9 cut(s) 41, 83, 144, 270, 283, 309, 432, 453, 530
FatI CATG 4 cut(s) 39, 268, 281, 451
Fnu4HI GCNGC 1 cut(s) 396
FokI GGATG 1 cut(s) 202
Fsp4HI GCNGC 1 cut(s) 396
FspBI CTAG 1 cut(s) 545
GluI GCNGC 1 cut(s) 396
HaeIII GGCC 1 cut(s) 297
Hin1II CATG 4 cut(s) 43, 272, 285, 455
HindIII AAGCTT 1 cut(s) 203
HinfI GANTC 3 cut(s) 71, 98, 515
HphI GGTGA 2 cut(s) 29, 190
Hpy188I TCNGA 1 cut(s) 464
Hpy188III TCNNGA 3 cut(s) 233, 241, 360
HpyAV CCTTC 2 cut(s) 356, 450
HpyCH4III ACNGT 2 cut(s) 61, 190
HpyCH4IV ACGT 1 cut(s) 225
HpyCH4V TGCA 2 cut(s) 253, 434
HpyF10VI GCNNNNNNNGC 2 cut(s) 74, 278
HpyF3I CTNAG 2 cut(s) 234, 401
HpySE526I ACGT 1 cut(s) 225
Hsp92II CATG 4 cut(s) 43, 272, 285, 455
Kzo9I GATC 3 cut(s) 229, 321, 459
LpnPI CCDG 9 cut(s) 67, 168, 196, 232, 246, 345, 420, 460, 500
Lsp1109I GCAGC 1 cut(s) 382
LweI GCATC 1 cut(s) 338
MaeI CTAG 1 cut(s) 545
MaeII ACGT 1 cut(s) 225
MaeIII GTNAC 4 cut(s) 178, 221, 388, 475
MalI GATC 3 cut(s) 231, 323, 461
MboI GATC 3 cut(s) 229, 321, 459
MboII GAAGA 3 cut(s) 329, 398, 502
MflI RGATCY 3 cut(s) 229, 321, 459
MluCI AATT 6 cut(s) 48, 148, 192, 336, 367, 481
MlyI GAGTC 1 cut(s) 65
MmeI TCCRAC 1 cut(s) 449
MnlI CCTC 4 cut(s) 121, 130, 433, 490
MseI TTAA 1 cut(s) 260
MslI CAYNNNNRTG 1 cut(s) 93
MwoI GCNNNNNNNGC 2 cut(s) 74, 278
NcoI CCATGG 1 cut(s) 451
NdeII GATC 3 cut(s) 229, 321, 459
NlaIII CATG 4 cut(s) 43, 272, 285, 455
NlaIV GGNNCC 3 cut(s) 231, 296, 461
NmuCI GTSAC 4 cut(s) 178, 221, 388, 475
NspI RCATGY 1 cut(s) 285
PfeI GAWTC 2 cut(s) 98, 515
PflMI CCANNNNNTGG 1 cut(s) 493
PkrI GCNGC 1 cut(s) 397
PleI GAGTC 1 cut(s) 65
PpsI GAGTC 1 cut(s) 65
PspN4I GGNNCC 3 cut(s) 231, 296, 461
PspPI GGNCC 1 cut(s) 295
PstNI CAGNNNCTG 1 cut(s) 74
PsuI RGATCY 3 cut(s) 229, 321, 459
RsaI GTAC 1 cut(s) 58
RsaNI GTAC 1 cut(s) 57
RseI CAYNNNNRTG 1 cut(s) 93
SaqAI TTAA 1 cut(s) 260
SatI GCNGC 1 cut(s) 396
Sau3AI GATC 3 cut(s) 229, 321, 459
Sau96I GGNCC 1 cut(s) 295
ScaI AGTACT 1 cut(s) 58
SchI GAGTC 1 cut(s) 65
SetI ASST 7 cut(s) 27, 141, 207, 228, 348, 357, 439
SfaNI GCATC 1 cut(s) 338
SmiMI CAYNNNNRTG 1 cut(s) 93
Sse9I AATT 6 cut(s) 48, 148, 192, 336, 367, 481
SspMI CTAG 1 cut(s) 545
StyI CCWWGG 1 cut(s) 451
TaaI ACNGT 2 cut(s) 61, 190
TaiI ACGT 1 cut(s) 228
TaqI TCGA 2 cut(s) 63, 242
TasI AATT 6 cut(s) 48, 148, 192, 336, 367, 481
TatI WGTACW 1 cut(s) 56
TfiI GAWTC 2 cut(s) 98, 515
Tru1I TTAA 1 cut(s) 260
Tru9I TTAA 1 cut(s) 260
TscAI CASTG 2 cut(s) 226, 397
TseFI GTSAC 4 cut(s) 178, 221, 388, 475
TseI GCWGC 1 cut(s) 395
Tsp45I GTSAC 4 cut(s) 178, 221, 388, 475
TspDTI ATGAA 2 cut(s) 77, 111
TspGWI ACGGA 1 cut(s) 318
TspRI CASTG 2 cut(s) 226, 397
Van91I CCANNNNNTGG 1 cut(s) 493
XapI RAATTY 2 cut(s) 48, 148
XceI RCATGY 1 cut(s) 285
XspI CTAG 1 cut(s) 545
ZrmI AGTACT 1 cut(s) 58
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.