Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0018532

Physical Location & Seq

Genomic Coordinates Reverse (-)

36998946 .. 37000357

Gene Structure 1412 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ32061

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGGTTGCCATAAAAAGAGCTAAAAGGGAATCTATGCAGGGAGGAGTTGAGTTCAAAGCCGAGGTTGAGCTCCTATCACGAGTACATCATAAGAATCTTGTTGGCCTTGTTGGTTTTTGTTTTGAACAAGGAGAACAAATATTGGTATATCAGTATGTTCCAAATGGTGATTTAAGGGACAGCCTATCAGGGAAGTCCGGAATCAGGTTGGACTGGATGAGAAGACTTCAAGTAGCACTTGGTGCGGCGAGAGGTCTGGCATATCTTCATGAACTTGCAAGCCCAACCATTATACACCGGGACATCAAATCAAACAACATTCTACTCGATAAAGATTTAAATGCAAAAGTTGCTGATTTTGGTCTCTCCAAGTCAATTGCTGATAGTGGAATGGACCACTTATCTACTCAAGTTAAAGGGACACTGGGCTACTTGGATCCTGAATATTATATGACTCAACAGTTGACTGACAAGAGCGACGTGTATAGCTTTGGCGTGGTAATGTTGGAGCTGATAACTGCTAGAAGGCCAATAGTGCAAGGGAAATATATAGTGAGAGTGGTACAGATGACAATGGATAAGTCGAAAGATTTGTACAACCTTGATGATATTCTTGATCCATTCATTGGTTTAGGAACAGAGCTGAAAGGTGTAGAAATGTTTGTTGATTTGGCAATGGCTTGTGTAGAAGAATTAGGGGATAAAAGACCAAGAATGGGGGAAGTGGTGAAACAGATAGAGAACATTATACAAATCGCTGCTTTCAACGCCGGTACCAATCCATTGCCCACTTTAGCAAGTTATGAGGAGTATGAGAGAATGGACAGCACCACGGATCTTTACAGCAGACCCTTTGATTATAGTGGAGCTTTTGACGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

293

Amino Acids

32.79

Weight (kDa)

5.25

Isoelectric Point (pI)

34.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	2 - 191	2.5e-41	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	2 - 243	2.2e-36	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0018532)

Species	Orthologous Gene IDs
pyrus_communis	pycom04g16110
rosa_chinensis	RchiOBHm_Chr5g0042201
rosa_multiflora	Rmu_co8085702.1_g000001
rosa_samantha	Rh5BG289200 Rh5BG289800 Rh5BG290000 Rh5CG320600 Rh5CG322000 Rh5CG322300 Rh5DG299200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	773
AccB1I	GGYRCC	1 cut(s)	773
AccB7I	CCANNNNNTGG	1 cut(s)	626
AccIII	TCCGGA	1 cut(s)	197
AciI	CCGC	1 cut(s)	245
AclWI	GGATC	4 cut(s)	431, 444, 611, 843
AdeI	CACNNNGTG	1 cut(s)	242
AfaI	GTAC	4 cut(s)	84, 564, 596, 775
AfiI	CCNNNNNNNGG	3 cut(s)	204, 626, 716
AflIII	ACRYGT	1 cut(s)	480
AgsI	TTSAA	4 cut(s)	55, 125, 230, 766
AjiI	CACGTC	1 cut(s)	481
AluBI	AGCT	6 cut(s)	20, 70, 489, 511, 643, 869
AluI	AGCT	6 cut(s)	20, 70, 489, 511, 643, 869
Alw21I	GWGCWC	1 cut(s)	72
Alw26I	GTCTC	1 cut(s)	368
AlwI	GGATC	4 cut(s)	431, 444, 611, 843
Aor13HI	TCCGGA	1 cut(s)	197
AoxI	GGCC	2 cut(s)	103, 527
ApeKI	GCWGC	1 cut(s)	758
Asp718I	GGTACC	1 cut(s)	773
AspS9I	GGNCC	1 cut(s)	394
AsuC2I	CCSGG	1 cut(s)	299
AsuHPI	GGTGA	2 cut(s)	179, 739
AvaII	GGWCC	1 cut(s)	394
BaeI	ACNNNNGTAYC	2 cut(s)	757, 790
BamHI	GGATCC	1 cut(s)	436
BanI	GGYRCC	1 cut(s)	773
BanII	GRGCYC	1 cut(s)	72
BauI	CACGAG	1 cut(s)	78
BbsI	GAAGAC	1 cut(s)	229
Bbv12I	GWGCWC	1 cut(s)	72
BbvI	GCAGC	1 cut(s)	745
BcnI	CCSGG	1 cut(s)	299
BcoDI	GTCTC	1 cut(s)	368
BfaI	CTAG	1 cut(s)	522
BisI	GCNGC	2 cut(s)	246, 759
BlsI	GCNGC	2 cut(s)	247, 760
Bme1390I	CCNGG	1 cut(s)	299
Bme18I	GGWCC	1 cut(s)	394
BmgBI	CACGTC	1 cut(s)	481
BmgT120I	GGNCC	1 cut(s)	394
BmiI	GGNNCC	2 cut(s)	438, 775
BmrFI	CCNGG	1 cut(s)	299
BmrI	ACTGGG	1 cut(s)	434
BmuI	ACTGGG	1 cut(s)	434
BpiI	GAAGAC	1 cut(s)	229
BpuEI	CTTGAG	1 cut(s)	393
BpuMI	CCSGG	1 cut(s)	299
BsaI	GGTCTC	1 cut(s)	368
BsaJI	CCNNGG	2 cut(s)	60, 831
BsaWI	WCCGGW	1 cut(s)	197
Bsc4I	CCNNNNNNNGG	3 cut(s)	204, 626, 716
Bse118I	RCCGGY	1 cut(s)	770
Bse1I	ACTGG	2 cut(s)	218, 429
Bse3DI	GCAATG	2 cut(s)	681, 782
BseAI	TCCGGA	1 cut(s)	197
BseDI	CCNNGG	2 cut(s)	60, 831
BseGI	GGATG	1 cut(s)	222
BseLI	CCNNNNNNNGG	3 cut(s)	204, 626, 716
BseMI	GCAATG	2 cut(s)	681, 782
BseNI	ACTGG	2 cut(s)	218, 429
BseRI	GAGGAG	2 cut(s)	57, 821
BseXI	GCAGC	1 cut(s)	745
BshFI	GGCC	2 cut(s)	105, 529
BshNI	GGYRCC	1 cut(s)	773
BsiHKAI	GWGCWC	1 cut(s)	72
BsiSI	CCGG	3 cut(s)	198, 298, 771
BslFI	GGGAC	3 cut(s)	191, 314, 433
BslI	CCNNNNNNNGG	3 cut(s)	204, 626, 716
BsmAI	GTCTC	1 cut(s)	368
BsmFI	GGGAC	3 cut(s)	191, 314, 433
BsnI	GGCC	2 cut(s)	105, 529
Bso31I	GGTCTC	1 cut(s)	368
Bsp1286I	GDGCHC	1 cut(s)	72
Bsp13I	TCCGGA	1 cut(s)	197
Bsp1407I	TGTACA	1 cut(s)	594
Bsp143I	GATC	3 cut(s)	436, 616, 835
BspACI	CCGC	1 cut(s)	245
BspANI	GGCC	2 cut(s)	105, 529
BspEI	TCCGGA	1 cut(s)	197
BspHI	TCATGA	1 cut(s)	268
BspLI	GGNNCC	2 cut(s)	438, 775
BspPI	GGATC	4 cut(s)	431, 444, 611, 843
BspT107I	GGYRCC	1 cut(s)	773
BspTNI	GGTCTC	1 cut(s)	368
BsrDI	GCAATG	2 cut(s)	681, 782
BsrFI	RCCGGY	1 cut(s)	770
BsrGI	TGTACA	1 cut(s)	594
BsrI	ACTGG	2 cut(s)	218, 429
BssAI	RCCGGY	1 cut(s)	770
BssECI	CCNNGG	2 cut(s)	60, 831
BssMI	GATC	3 cut(s)	436, 616, 835
BssSI	CACGAG	1 cut(s)	78
Bst2BI	CACGAG	1 cut(s)	78
Bst4CI	ACNGT	1 cut(s)	462
BstAPI	GCANNNNNTGC	2 cut(s)	242, 350
BstAUI	TGTACA	1 cut(s)	594
BstC8I	GCNNGC	1 cut(s)	280
BstDSI	CCRYGG	1 cut(s)	831
BstF5I	GGATG	1 cut(s)	222
BstKTI	GATC	3 cut(s)	439, 619, 838
BstMAI	GTCTC	1 cut(s)	368
BstMBI	GATC	3 cut(s)	436, 616, 835
BstMWI	GCNNNNNNNGC	4 cut(s)	242, 350, 535, 767
BstSCI	CCNGG	1 cut(s)	297
BstV1I	GCAGC	1 cut(s)	745
BstV2I	GAAGAC	1 cut(s)	229
BstX2I	RGATCY	2 cut(s)	436, 835
BstYI	RGATCY	2 cut(s)	436, 835
BsuRI	GGCC	2 cut(s)	105, 529
BtgI	CCRYGG	1 cut(s)	831
BtrI	CACGTC	1 cut(s)	481
BtsCI	GGATG	1 cut(s)	222
BtsIMutI	CAGTG	1 cut(s)	422
Cac8I	GCNNGC	1 cut(s)	280
CciI	TCATGA	1 cut(s)	268
Cfr10I	RCCGGY	1 cut(s)	770
Cfr13I	GGNCC	1 cut(s)	394
Csp6I	GTAC	4 cut(s)	83, 563, 595, 774
CviAII	CATG	1 cut(s)	269
CviQI	GTAC	4 cut(s)	83, 563, 595, 774
DpnI	GATC	3 cut(s)	438, 618, 837
DpnII	GATC	3 cut(s)	436, 616, 835
DraI	TTTAAA	1 cut(s)	339
DraIII	CACNNNGTG	1 cut(s)	242
Ecl136II	GAGCTC	1 cut(s)	70
Eco24I	GRGCYC	1 cut(s)	72
Eco31I	GGTCTC	1 cut(s)	368
Eco47I	GGWCC	1 cut(s)	394
Eco53kI	GAGCTC	1 cut(s)	70
EcoICRI	GAGCTC	1 cut(s)	70
EcoT38I	GRGCYC	1 cut(s)	72
FaeI	CATG	1 cut(s)	272
FalI	AAGNNNNNCTT	2 cut(s)	222, 254
FaqI	GGGAC	3 cut(s)	191, 314, 433
FatI	CATG	1 cut(s)	268
Fnu4HI	GCNGC	2 cut(s)	246, 759
FokI	GGATG	1 cut(s)	229
FriOI	GRGCYC	1 cut(s)	72
Fsp4HI	GCNGC	2 cut(s)	246, 759
FspBI	CTAG	1 cut(s)	522
GluI	GCNGC	2 cut(s)	246, 759
HaeIII	GGCC	2 cut(s)	105, 529
HapII	CCGG	3 cut(s)	198, 298, 771
Hin1II	CATG	1 cut(s)	272
HincII	GTYRAC	1 cut(s)	465
HindII	GTYRAC	1 cut(s)	465
HinfI	GANTC	4 cut(s)	29, 94, 201, 454
HpaII	CCGG	3 cut(s)	198, 298, 771
HphI	GGTGA	2 cut(s)	179, 739
Hpy166II	GTNNAC	1 cut(s)	465
Hpy188III	TCNNGA	5 cut(s)	78, 198, 269, 440, 614
Hpy8I	GTNNAC	1 cut(s)	465
Hpy99I	CGWCG	1 cut(s)	482
HpyAV	CCTTC	1 cut(s)	519
HpyCH4III	ACNGT	1 cut(s)	462
HpyCH4IV	ACGT	1 cut(s)	480
HpyCH4V	TGCA	4 cut(s)	37, 278, 344, 538
HpyF10VI	GCNNNNNNNGC	4 cut(s)	242, 350, 535, 767
HpySE526I	ACGT	1 cut(s)	480
Hsp92II	CATG	1 cut(s)	272
Kpn2I	TCCGGA	1 cut(s)	197
KpnI	GGTACC	1 cut(s)	777
Kzo9I	GATC	3 cut(s)	436, 616, 835
LmnI	GCTCC	3 cut(s)	75, 508, 866
Lsp1109I	GCAGC	1 cut(s)	745
MaeI	CTAG	1 cut(s)	522
MaeII	ACGT	1 cut(s)	480
MalI	GATC	3 cut(s)	438, 618, 837
MboI	GATC	3 cut(s)	436, 616, 835
MboII	GAAGA	3 cut(s)	234, 257, 701
MfeI	CAATTG	1 cut(s)	375
MflI	RGATCY	2 cut(s)	436, 835
MhlI	GDGCHC	1 cut(s)	72
MluCI	AATT	2 cut(s)	375, 692
MlyI	GAGTC	1 cut(s)	448
MmeI	TCCRAC	2 cut(s)	189, 486
MnlI	CCTC	4 cut(s)	35, 55, 245, 799
MroI	TCCGGA	1 cut(s)	197
MseI	TTAA	3 cut(s)	173, 338, 414
MspI	CCGG	3 cut(s)	198, 298, 771
MspR9I	CCNGG	1 cut(s)	299
MunI	CAATTG	1 cut(s)	375
MwoI	GCNNNNNNNGC	4 cut(s)	242, 350, 535, 767
NciI	CCSGG	1 cut(s)	299
NdeII	GATC	3 cut(s)	436, 616, 835
NlaIII	CATG	1 cut(s)	272
NlaIV	GGNNCC	2 cut(s)	438, 775
NmeAIII	GCCGAG	1 cut(s)	85
PagI	TCATGA	1 cut(s)	268
PfeI	GAWTC	3 cut(s)	29, 94, 201
PflMI	CCANNNNNTGG	1 cut(s)	626
PkrI	GCNGC	2 cut(s)	247, 760
PleI	GAGTC	1 cut(s)	448
PpsI	GAGTC	1 cut(s)	448
Psp124BI	GAGCTC	1 cut(s)	72
PspN4I	GGNNCC	2 cut(s)	438, 775
PspPI	GGNCC	1 cut(s)	394
PsuI	RGATCY	2 cut(s)	436, 835
RsaI	GTAC	4 cut(s)	84, 564, 596, 775
RsaNI	GTAC	4 cut(s)	83, 563, 595, 774
SacI	GAGCTC	1 cut(s)	72
SaqAI	TTAA	3 cut(s)	173, 338, 414
SatI	GCNGC	2 cut(s)	246, 759
Sau3AI	GATC	3 cut(s)	436, 616, 835
Sau96I	GGNCC	1 cut(s)	394
SchI	GAGTC	1 cut(s)	448
ScrFI	CCNGG	1 cut(s)	299
SduI	GDGCHC	1 cut(s)	72
SinI	GGWCC	1 cut(s)	394
SmiI	ATTTAAAT	1 cut(s)	339
SmlI	CTYRAG	1 cut(s)	408
SmoI	CTYRAG	1 cut(s)	408
Sse9I	AATT	2 cut(s)	375, 692
SsiI	CCGC	1 cut(s)	245
SspI	AATATT	2 cut(s)	141, 446
SspMI	CTAG	1 cut(s)	522
SstI	GAGCTC	1 cut(s)	72
StyD4I	CCNGG	1 cut(s)	297
SwaI	ATTTAAAT	1 cut(s)	339
TaaI	ACNGT	1 cut(s)	462
TaiI	ACGT	1 cut(s)	483
TaqI	TCGA	2 cut(s)	327, 584
TasI	AATT	2 cut(s)	375, 692
TatI	WGTACW	2 cut(s)	82, 594
TauI	GCSGC	1 cut(s)	248
TfiI	GAWTC	3 cut(s)	29, 94, 201
Tru1I	TTAA	3 cut(s)	173, 338, 414
Tru9I	TTAA	3 cut(s)	173, 338, 414
TscAI	CASTG	1 cut(s)	429
TseI	GCWGC	1 cut(s)	758
TspDTI	ATGAA	3 cut(s)	257, 285, 613
TspGWI	ACGGA	1 cut(s)	848
TspRI	CASTG	1 cut(s)	429
Van91I	CCANNNNNTGG	1 cut(s)	626
VpaK11BI	GGWCC	1 cut(s)	394
XspI	CTAG	1 cut(s)	522

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.