Rh5CG322000

Leucine-rich repeat receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0018532
Physical Location & Seq
Reverse (-)
35603992 .. 35604427
436 bp
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UTR
Exon/CDS
Intron
Rh5CG322000.1

Sequence Viewer

Length: 318 bp
ATGGATAAGTCAAAAGATTTGTATAACCTTCATGAAGTACTTGATCCAGCCATGGATTTAGAAAATGATCAGCTGAAAGGTTTAGAAATGTTTGTCAATTTGGCAATGTTGTGTGTAGACGAATTACGGGCTAAGAGGCCTAGAATGGGGGCAGTGGTGAAAGAGATAGAGAATATAATACAGATTTCGGCTACTAATTGGAACGCCGGTGCCAATTCAGCAGCTACTTCAGCAAGTTATGAGGATGTGAGCAGAGAAGTTTCCAAAGATCTTTACAGCGTCTTGGATTATAGTGTGGCTGTTCAAGGACGAAGATAG

Protein Analysis

105

Amino Acids

11.74

Weight (kDa)

4.77

Isoelectric Point (pI)

28.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018532)

Species Orthologous Gene IDs
pyrus_communis pycom04g16110
rosa_chinensis RchiOBHm_Chr5g0042201
rosa_multiflora Rmu_co8085702.1_g000001
rosa_samantha Rh5BG289200 Rh5BG289800 Rh5BG290000 Rh5CG320600 Rh5CG322000 Rh5CG322300 Rh5DG299200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 209
AccI GTMKAC 1 cut(s) 117
AclWI GGATC 1 cut(s) 38
AcuI CTGAAG 1 cut(s) 213
AfaI GTAC 1 cut(s) 39
AfiI CCNNNNNNNGG 1 cut(s) 146
AgsI TTSAA 1 cut(s) 305
AluBI AGCT 2 cut(s) 73, 224
AluI AGCT 2 cut(s) 73, 224
AlwI GGATC 1 cut(s) 38
AoxI GGCC 1 cut(s) 137
ApeKI GCWGC 1 cut(s) 221
AsuHPI GGTGA 1 cut(s) 169
BanI GGYRCC 1 cut(s) 209
BbvI GCAGC 1 cut(s) 233
BclI TGATCA 1 cut(s) 67
BfaI CTAG 1 cut(s) 141
BglII AGATCT 1 cut(s) 268
BisI GCNGC 1 cut(s) 222
BlsI GCNGC 1 cut(s) 223
BmcAI AGTACT 1 cut(s) 39
BmiI GGNNCC 1 cut(s) 211
BsaJI CCNNGG 1 cut(s) 51
Bsc4I CCNNNNNNNGG 1 cut(s) 146
Bse118I RCCGGY 1 cut(s) 206
Bse3DI GCAATG 1 cut(s) 111
BseDI CCNNGG 1 cut(s) 51
BseGI GGATG 1 cut(s) 250
BseLI CCNNNNNNNGG 1 cut(s) 146
BseMI GCAATG 1 cut(s) 111
BseXI GCAGC 1 cut(s) 233
BshFI GGCC 1 cut(s) 139
BshNI GGYRCC 1 cut(s) 209
BsiSI CCGG 1 cut(s) 207
BslI CCNNNNNNNGG 1 cut(s) 146
BsnI GGCC 1 cut(s) 139
Bsp143I GATC 3 cut(s) 43, 67, 268
Bsp19I CCATGG 1 cut(s) 51
BspANI GGCC 1 cut(s) 139
BspHI TCATGA 1 cut(s) 31
BspLI GGNNCC 1 cut(s) 211
BspPI GGATC 1 cut(s) 38
BspT107I GGYRCC 1 cut(s) 209
BsrDI GCAATG 1 cut(s) 111
BsrFI RCCGGY 1 cut(s) 206
BssAI RCCGGY 1 cut(s) 206
BssECI CCNNGG 1 cut(s) 51
BssMI GATC 3 cut(s) 43, 67, 268
BssT1I CCWWGG 1 cut(s) 51
BstDEI CTNAG 1 cut(s) 132
BstDSI CCRYGG 1 cut(s) 51
BstF5I GGATG 1 cut(s) 250
BstKTI GATC 3 cut(s) 46, 70, 271
BstMBI GATC 3 cut(s) 43, 67, 268
BstMWI GCNNNNNNNGC 2 cut(s) 218, 230
BstV1I GCAGC 1 cut(s) 233
BstX2I RGATCY 1 cut(s) 268
BstYI RGATCY 1 cut(s) 268
BsuRI GGCC 1 cut(s) 139
BtgI CCRYGG 1 cut(s) 51
BtsCI GGATG 1 cut(s) 250
BtsI GCAGTG 1 cut(s) 159
BtsIMutI CAGTG 1 cut(s) 159
CciI TCATGA 1 cut(s) 31
Cfr10I RCCGGY 1 cut(s) 206
CseI GACGC 1 cut(s) 268
Csp6I GTAC 1 cut(s) 38
CviAII CATG 2 cut(s) 32, 52
CviJI RGCY 7 cut(s) 50, 73, 131, 139, 191, 224, 299
CviKI_1 RGCY 7 cut(s) 50, 73, 131, 139, 191, 224, 299
CviQI GTAC 1 cut(s) 38
DdeI CTNAG 1 cut(s) 132
DpnI GATC 3 cut(s) 45, 69, 270
DpnII GATC 3 cut(s) 43, 67, 268
Eco130I CCWWGG 1 cut(s) 51
Eco147I AGGCCT 1 cut(s) 139
Eco57I CTGAAG 1 cut(s) 213
EcoT14I CCWWGG 1 cut(s) 51
ErhI CCWWGG 1 cut(s) 51
FaeI CATG 2 cut(s) 35, 55
FaiI YATR 6 cut(s) 24, 33, 53, 176, 240, 291
FatI CATG 2 cut(s) 31, 51
FbaI TGATCA 1 cut(s) 67
FblI GTMKAC 1 cut(s) 117
Fnu4HI GCNGC 1 cut(s) 222
FokI GGATG 1 cut(s) 257
Fsp4HI GCNGC 1 cut(s) 222
FspBI CTAG 1 cut(s) 141
GluI GCNGC 1 cut(s) 222
HaeIII GGCC 1 cut(s) 139
HapII CCGG 1 cut(s) 207
HgaI GACGC 1 cut(s) 268
Hin1II CATG 2 cut(s) 35, 55
HpaII CCGG 1 cut(s) 207
HphI GGTGA 1 cut(s) 169
Hpy166II GTNNAC 1 cut(s) 118
Hpy188III TCNNGA 1 cut(s) 32
Hpy8I GTNNAC 1 cut(s) 118
HpyAV CCTTC 1 cut(s) 38
HpyF10VI GCNNNNNNNGC 2 cut(s) 218, 230
HpyF3I CTNAG 1 cut(s) 132
Hsp92II CATG 2 cut(s) 35, 55
Ksp22I TGATCA 1 cut(s) 67
Kzo9I GATC 3 cut(s) 43, 67, 268
LpnPI CCDG 2 cut(s) 60, 220
Lsp1109I GCAGC 1 cut(s) 233
MaeI CTAG 1 cut(s) 141
MalI GATC 3 cut(s) 45, 69, 270
MboI GATC 3 cut(s) 43, 67, 268
MflI RGATCY 1 cut(s) 268
MluCI AATT 4 cut(s) 97, 122, 196, 214
MnlI CCTC 2 cut(s) 129, 235
MspA1I CMGCKG 1 cut(s) 73
MspI CCGG 1 cut(s) 207
MwoI GCNNNNNNNGC 2 cut(s) 218, 230
NcoI CCATGG 1 cut(s) 51
NdeII GATC 3 cut(s) 43, 67, 268
NlaIII CATG 2 cut(s) 35, 55
NlaIV GGNNCC 1 cut(s) 211
PagI TCATGA 1 cut(s) 31
PceI AGGCCT 1 cut(s) 139
PkrI GCNGC 1 cut(s) 223
PspN4I GGNNCC 1 cut(s) 211
PsuI RGATCY 1 cut(s) 268
PvuII CAGCTG 1 cut(s) 73
RsaI GTAC 1 cut(s) 39
RsaNI GTAC 1 cut(s) 38
SatI GCNGC 1 cut(s) 222
Sau3AI GATC 3 cut(s) 43, 67, 268
ScaI AGTACT 1 cut(s) 39
SetI ASST 4 cut(s) 30, 75, 82, 226
SgeI CNNG 9 cut(s) 44, 53, 59, 64, 140, 153, 219, 246, 295
SgrAI CRCCGGYG 1 cut(s) 206
Sse9I AATT 4 cut(s) 97, 122, 196, 214
SseBI AGGCCT 1 cut(s) 139
SspMI CTAG 1 cut(s) 141
StuI AGGCCT 1 cut(s) 139
StyI CCWWGG 1 cut(s) 51
TasI AATT 4 cut(s) 97, 122, 196, 214
TatI WGTACW 1 cut(s) 37
TscAI CASTG 1 cut(s) 159
TseI GCWGC 1 cut(s) 221
TspDTI ATGAA 2 cut(s) 20, 48
TspRI CASTG 1 cut(s) 159
XmiI GTMKAC 1 cut(s) 117
XspI CTAG 1 cut(s) 141
ZrmI AGTACT 1 cut(s) 39
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.