Rh5DG299200

Leucine-rich repeat receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
Physical Location & Seq
Reverse (-)
37601639 .. 37601983
345 bp
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UTR
Exon/CDS
Intron
Rh5DG299200.1

Sequence Viewer

Length: 345 bp
ATGCAAGGGAATTATATAGTGAAAGTGGTACAGATGACAATGGATAAGTCGAAAGATTTGTACAACCTTGATGACATTCTTGATCCATTCATTGGTTTAGGAACAGAGCTGAAAGGTGTAGAAATGTTTGTGGATTTGGCAATGTCTTGTGTAGAAGAACTAAGGGATAAAAGACCAAGAATGGGGGAAGTGGTGAAACAGATAGAGAACATTATACAAATTGCTGCTTTGAACGCCGGTACTAATCCATTGTCAACTTCAGCAAGTTATGAGGAATATGAGTGTAAGGACAGCACCGAGGATGGTTACAGCAGACCCTTTGATTATAGTGGAAAGGGTTTTTGA

Protein Analysis

114

Amino Acids

12.82

Weight (kDa)

4.45

Isoelectric Point (pI)

41.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0018532)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 92
AclWI GGATC 1 cut(s) 77
AcuI CTGAAG 1 cut(s) 243
AfaI GTAC 3 cut(s) 30, 62, 241
AfiI CCNNNNNNNGG 2 cut(s) 92, 182
AgsI TTSAA 1 cut(s) 232
AluBI AGCT 1 cut(s) 109
AluI AGCT 1 cut(s) 109
AlwI GGATC 1 cut(s) 77
ApeKI GCWGC 1 cut(s) 224
AsuHPI GGTGA 1 cut(s) 205
BbvI GCAGC 1 cut(s) 211
BccI CCATC 1 cut(s) 296
BisI GCNGC 1 cut(s) 225
BlsI GCNGC 1 cut(s) 226
BsaJI CCNNGG 1 cut(s) 297
Bsc4I CCNNNNNNNGG 2 cut(s) 92, 182
Bse118I RCCGGY 1 cut(s) 236
Bse3DI GCAATG 1 cut(s) 147
BseDI CCNNGG 1 cut(s) 297
BseGI GGATG 1 cut(s) 307
BseLI CCNNNNNNNGG 2 cut(s) 92, 182
BseMI GCAATG 1 cut(s) 147
BseXI GCAGC 1 cut(s) 211
BsiSI CCGG 1 cut(s) 237
BslI CCNNNNNNNGG 2 cut(s) 92, 182
Bsp1407I TGTACA 1 cut(s) 60
Bsp143I GATC 1 cut(s) 82
BspPI GGATC 1 cut(s) 77
BsrDI GCAATG 1 cut(s) 147
BsrFI RCCGGY 1 cut(s) 236
BsrGI TGTACA 1 cut(s) 60
BssAI RCCGGY 1 cut(s) 236
BssECI CCNNGG 1 cut(s) 297
BssMI GATC 1 cut(s) 82
BstAUI TGTACA 1 cut(s) 60
BstDEI CTNAG 1 cut(s) 161
BstF5I GGATG 1 cut(s) 307
BstKTI GATC 1 cut(s) 85
BstMBI GATC 1 cut(s) 82
BstMWI GCNNNNNNNGC 1 cut(s) 233
BstV1I GCAGC 1 cut(s) 211
BtsCI GGATG 1 cut(s) 307
Cfr10I RCCGGY 1 cut(s) 236
Csp6I GTAC 3 cut(s) 29, 61, 240
CviJI RGCY 1 cut(s) 109
CviKI_1 RGCY 1 cut(s) 109
CviQI GTAC 3 cut(s) 29, 61, 240
DdeI CTNAG 1 cut(s) 161
DpnI GATC 1 cut(s) 84
DpnII GATC 1 cut(s) 82
Eco57I CTGAAG 1 cut(s) 243
FaiI YATR 6 cut(s) 15, 17, 215, 270, 279, 327
Fnu4HI GCNGC 1 cut(s) 225
FokI GGATG 1 cut(s) 314
Fsp4HI GCNGC 1 cut(s) 225
GluI GCNGC 1 cut(s) 225
HapII CCGG 1 cut(s) 237
HincII GTYRAC 1 cut(s) 255
HindII GTYRAC 1 cut(s) 255
HpaII CCGG 1 cut(s) 237
HphI GGTGA 1 cut(s) 205
Hpy166II GTNNAC 1 cut(s) 255
Hpy188III TCNNGA 1 cut(s) 80
Hpy8I GTNNAC 1 cut(s) 255
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 1 cut(s) 233
HpyF3I CTNAG 1 cut(s) 161
Kzo9I GATC 1 cut(s) 82
LpnPI CCDG 1 cut(s) 250
Lsp1109I GCAGC 1 cut(s) 211
MaeIII GTNAC 1 cut(s) 305
MalI GATC 1 cut(s) 84
MboI GATC 1 cut(s) 82
MboII GAAGA 1 cut(s) 167
MluCI AATT 2 cut(s) 10, 219
MnlI CCTC 2 cut(s) 265, 292
MspI CCGG 1 cut(s) 237
MwoI GCNNNNNNNGC 1 cut(s) 233
NdeII GATC 1 cut(s) 82
PflMI CCANNNNNTGG 1 cut(s) 92
PkrI GCNGC 1 cut(s) 226
RsaI GTAC 3 cut(s) 30, 62, 241
RsaNI GTAC 3 cut(s) 29, 61, 240
SatI GCNGC 1 cut(s) 225
Sau3AI GATC 1 cut(s) 82
SetI ASST 3 cut(s) 69, 111, 118
SgeI CNNG 8 cut(s) 17, 80, 92, 159, 189, 249, 276, 310
Sse9I AATT 2 cut(s) 10, 219
TaqI TCGA 1 cut(s) 50
TasI AATT 2 cut(s) 10, 219
TatI WGTACW 1 cut(s) 60
TseI GCWGC 1 cut(s) 224
TspDTI ATGAA 1 cut(s) 79
Van91I CCANNNNNTGG 1 cut(s) 92
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.