Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0019012

Physical Location & Seq

Genomic Coordinates Forward (+)

53310244 .. 53314015

Gene Structure 3772 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ32932

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGTTTTCAATTGTTCTTCACCGATTTTATCATTTCTTTTTACTAGTGTTAATACTTTGTAGTTCAGGAAAAAACATGTCCTGTTCCCATTTTACACTAGATAACAGTTTTCTGAAAACAGCTATCAGTCGTGCAACGTCCAGAAATGATTGGATGACTATCAGAGATGCCCTTGAGGTGTCTGCTGAAATGTTTAAGAAGGATGGAAATAATGTTTCAGATTATGTTCAGCGTCATCTTATATCTTTGTCCATTTGGGAGGAATTACGTTTCTGGGAAAGCTACTTTGACTGTCTAATGGAACGGTCTTCAAACAAGCCACTACATGAACTGGAGAAAAGTAACTTGGAAGATATTCTAATTAAACGACCAGCAGAGGAATGTCTTGTCTTAGTTGCTGCGTCTTTTTCCATGACTGCTTCATTGAGGTCGACCAACTATGCCTCTTTGGTGACTGATCAGCTATCTTTGGTGGAATTACACATGGTTCTGTATTTCTTCTCTATTTATACTTTTCCTGGCACCTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0002682 GO:0002683 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0007049 GO:0007275 GO:0008150 GO:0009791 GO:0009825 GO:0009888 GO:0009987 GO:0010235 GO:0010374 GO:0010440 GO:0016020 GO:0016049 GO:0022402 GO:0030135 GO:0030136 GO:0031347 GO:0031348 GO:0031410 GO:0031461 GO:0031982 GO:0032501 GO:0032502 GO:0032506 GO:0032991 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0045088 GO:0045824 GO:0048519 GO:0048583 GO:0048585 GO:0048856 GO:0048869 GO:0050776 GO:0050777 GO:0050789 GO:0051301 GO:0061640 GO:0065007 GO:0071944 GO:0080008 GO:0080134 GO:0090558 GO:0097708 GO:1902410 GO:1902494 GO:1903047 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DENN WD40 dDENN uDENN

Protein Analysis

176

Amino Acids

20.39

Weight (kDa)

5.84

Isoelectric Point (pI)

46.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019012)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0051881
rosa_multiflora	Rmu_sc0004753.1_g000014
rosa_roxburghii	Rroxscaffold_165G00436970 Rroxscaffold_1G00003450 Rroxscaffold_6G00425400
rosa_samantha	Rh3AG297900 Rh5AG452700 Rh5BG359400
rosa_wichuraiana	Rw3G026290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	521
AccI	GTMKAC	1 cut(s)	431
AflIII	ACRYGT	1 cut(s)	75
AgsI	TTSAA	2 cut(s)	9, 312
AhlI	ACTAGT	1 cut(s)	43
AjnI	CCWGG	1 cut(s)	517
AjuI	GAANNNNNNNTTGG	2 cut(s)	329, 361
AluBI	AGCT	3 cut(s)	122, 282, 463
AluI	AGCT	3 cut(s)	122, 282, 463
ApeKI	GCWGC	1 cut(s)	398
Asp700I	GAANNNNTTC	1 cut(s)	354
AsuHPI	GGTGA	2 cut(s)	11, 463
BanI	GGYRCC	1 cut(s)	521
BbsI	GAAGAC	1 cut(s)	300
BbvI	GCAGC	1 cut(s)	385
BccI	CCATC	1 cut(s)	197
BciT130I	CCWGG	1 cut(s)	519
BclI	TGATCA	1 cut(s)	457
BcuI	ACTAGT	1 cut(s)	43
BfaI	CTAG	2 cut(s)	44, 98
BisI	GCNGC	1 cut(s)	399
BlsI	GCNGC	1 cut(s)	400
Bme1390I	CCNGG	1 cut(s)	519
BmiI	GGNNCC	1 cut(s)	523
BmrFI	CCNGG	1 cut(s)	519
BmsI	GCATC	1 cut(s)	157
BpiI	GAAGAC	1 cut(s)	300
BpmI	CTGGAG	1 cut(s)	353
BpuEI	CTTGAG	1 cut(s)	194
BsaBI	GATNNNNATC	1 cut(s)	158
Bse1I	ACTGG	1 cut(s)	336
Bse8I	GATNNNNATC	1 cut(s)	158
BseBI	CCWGG	1 cut(s)	519
BseGI	GGATG	2 cut(s)	159, 208
BseJI	GATNNNNATC	1 cut(s)	158
BseNI	ACTGG	1 cut(s)	336
BseXI	GCAGC	1 cut(s)	385
BshNI	GGYRCC	1 cut(s)	521
Bsp143I	GATC	1 cut(s)	457
BspLI	GGNNCC	1 cut(s)	523
BspT107I	GGYRCC	1 cut(s)	521
BsrI	ACTGG	1 cut(s)	336
BssMI	GATC	1 cut(s)	457
Bst2UI	CCWGG	1 cut(s)	519
Bst4CI	ACNGT	3 cut(s)	107, 293, 306
BstDEI	CTNAG	1 cut(s)	391
BstF5I	GGATG	2 cut(s)	159, 208
BstKTI	GATC	1 cut(s)	460
BstMBI	GATC	1 cut(s)	457
BstNI	CCWGG	1 cut(s)	519
BstNSI	RCATGY	1 cut(s)	79
BstSCI	CCNGG	1 cut(s)	517
BstV1I	GCAGC	1 cut(s)	385
BstV2I	GAAGAC	1 cut(s)	300
BtsCI	GGATG	2 cut(s)	159, 208
CseI	GACGC	2 cut(s)	221, 390
CviAII	CATG	4 cut(s)	76, 326, 412, 484
CviJI	RGCY	4 cut(s)	122, 282, 319, 463
CviKI_1	RGCY	4 cut(s)	122, 282, 319, 463
DdeI	CTNAG	1 cut(s)	391
DpnI	GATC	1 cut(s)	459
DpnII	GATC	1 cut(s)	457
EcoRII	CCWGG	1 cut(s)	517
FaeI	CATG	4 cut(s)	79, 329, 415, 487
FaiI	YATR	8 cut(s)	77, 225, 242, 327, 413, 441, 485, 510
FatI	CATG	4 cut(s)	75, 325, 411, 483
FbaI	TGATCA	1 cut(s)	457
FblI	GTMKAC	1 cut(s)	431
Fnu4HI	GCNGC	1 cut(s)	399
FokI	GGATG	2 cut(s)	166, 215
Fsp4HI	GCNGC	1 cut(s)	399
FspBI	CTAG	2 cut(s)	44, 98
GluI	GCNGC	1 cut(s)	399
GsuI	CTGGAG	1 cut(s)	353
HgaI	GACGC	2 cut(s)	221, 390
Hin1II	CATG	4 cut(s)	79, 329, 415, 487
HincII	GTYRAC	1 cut(s)	432
HindII	GTYRAC	1 cut(s)	432
HphI	GGTGA	2 cut(s)	11, 463
Hpy166II	GTNNAC	1 cut(s)	432
Hpy188I	TCNGA	3 cut(s)	114, 164, 220
Hpy188III	TCNNGA	2 cut(s)	66, 141
Hpy8I	GTNNAC	1 cut(s)	432
HpyAV	CCTTC	1 cut(s)	193
HpyCH4III	ACNGT	3 cut(s)	107, 293, 306
HpyCH4IV	ACGT	2 cut(s)	137, 268
HpyCH4V	TGCA	1 cut(s)	134
HpyF3I	CTNAG	1 cut(s)	391
HpySE526I	ACGT	2 cut(s)	137, 268
Hsp92II	CATG	4 cut(s)	79, 329, 415, 487
Ksp22I	TGATCA	1 cut(s)	457
Kzo9I	GATC	1 cut(s)	457
LpnPI	CCDG	7 cut(s)	51, 94, 154, 259, 317, 384, 504
Lsp1109I	GCAGC	1 cut(s)	385
LweI	GCATC	1 cut(s)	157
MaeI	CTAG	2 cut(s)	44, 98
MaeII	ACGT	2 cut(s)	137, 268
MaeIII	GTNAC	2 cut(s)	341, 451
MalI	GATC	1 cut(s)	459
MboI	GATC	1 cut(s)	457
MboII	GAAGA	4 cut(s)	8, 300, 362, 490
MfeI	CAATTG	1 cut(s)	9
MluCI	AATT	4 cut(s)	9, 263, 360, 476
MnlI	CCTC	5 cut(s)	169, 253, 370, 420, 454
MroXI	GAANNNNTTC	1 cut(s)	354
MseI	TTAA	4 cut(s)	50, 195, 363, 529
MspR9I	CCNGG	1 cut(s)	519
MunI	CAATTG	1 cut(s)	9
MvaI	CCWGG	1 cut(s)	519
NdeII	GATC	1 cut(s)	457
NlaIII	CATG	4 cut(s)	79, 329, 415, 487
NlaIV	GGNNCC	1 cut(s)	523
NmuCI	GTSAC	1 cut(s)	451
NspI	RCATGY	1 cut(s)	79
PciI	ACATGT	1 cut(s)	75
PdmI	GAANNNNTTC	1 cut(s)	354
PkrI	GCNGC	1 cut(s)	400
PscI	ACATGT	1 cut(s)	75
Psp6I	CCWGG	1 cut(s)	517
PspGI	CCWGG	1 cut(s)	517
PspN4I	GGNNCC	1 cut(s)	523
SalI	GTCGAC	1 cut(s)	430
SaqAI	TTAA	4 cut(s)	50, 195, 363, 529
SatI	GCNGC	1 cut(s)	399
Sau3AI	GATC	1 cut(s)	457
ScrFI	CCNGG	1 cut(s)	519
SetI	ASST	8 cut(s)	124, 140, 180, 271, 284, 431, 465, 527
SfaNI	GCATC	1 cut(s)	157
SmlI	CTYRAG	1 cut(s)	173
SmoI	CTYRAG	1 cut(s)	173
SpeI	ACTAGT	1 cut(s)	43
Sse9I	AATT	4 cut(s)	9, 263, 360, 476
SspMI	CTAG	2 cut(s)	44, 98
StyD4I	CCNGG	1 cut(s)	517
TaaI	ACNGT	3 cut(s)	107, 293, 306
TaiI	ACGT	2 cut(s)	140, 271
TaqI	TCGA	1 cut(s)	431
TasI	AATT	4 cut(s)	9, 263, 360, 476
Tru1I	TTAA	4 cut(s)	50, 195, 363, 529
Tru9I	TTAA	4 cut(s)	50, 195, 363, 529
TseFI	GTSAC	1 cut(s)	451
TseI	GCWGC	1 cut(s)	398
Tsp45I	GTSAC	1 cut(s)	451
TspDTI	ATGAA	2 cut(s)	342, 411
XceI	RCATGY	1 cut(s)	79
XmiI	GTMKAC	1 cut(s)	431
XmnI	GAANNNNTTC	1 cut(s)	354
XspI	CTAG	2 cut(s)	44, 98

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.