Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004753.1

Orthogroup ID

OG0019012

Physical Location & Seq

Genomic Coordinates Forward (+)

41241 .. 45377

Gene Structure 4137 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004753.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

atgacaattacatcggtgaggaattcacgcgattctctctctggaattgacaaagatgaagtctatgcagcctccaaggagaaaagcgcctccgccttcagatctaactataaggacttggattcaaagccttcaccggcggctaagttgaagagtctgttgccgccaaggccgccgccttcaaatcctctcaaacgtaagctgggacgcttcctaagaactccgtccatgaagcctctggatctcttcgtcgagctgaaaacagctatcagtcgtgcaacgtcgagaaatgattggatgactatcagagatgcccttgaggtgtctgctgaaatgtttaagaaggatggaaataatgtttcagattatgttcaacgtcatcttatatctttgtccatttgggaggaattacgtttctgggaaagctactttgactgtctaatggaacggtcttcaaacaagtcggccaactatgcctctttggtgacagatcagctatctttggtggaattacacatggctggactaggacttcctgatcttgatgcatggtacatgattgaaacaatagctgagaagaacaacattggatacacacaatttataaagctgagggggttattgttgcatgttcaacaaggataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0002682 GO:0002683 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0007049 GO:0007275 GO:0008150 GO:0009791 GO:0009825 GO:0009888 GO:0009987 GO:0010235 GO:0010374 GO:0010440 GO:0016020 GO:0016049 GO:0022402 GO:0030135 GO:0030136 GO:0031347 GO:0031348 GO:0031410 GO:0031461 GO:0031982 GO:0032501 GO:0032502 GO:0032506 GO:0032991 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0045088 GO:0045824 GO:0048519 GO:0048583 GO:0048585 GO:0048856 GO:0048869 GO:0050776 GO:0050777 GO:0050789 GO:0051301 GO:0061640 GO:0065007 GO:0071944 GO:0080008 GO:0080134 GO:0090558 GO:0097708 GO:1902410 GO:1902494 GO:1903047 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DENN WD40 dDENN uDENN

Protein Analysis

214

Amino Acids

24.3

Weight (kDa)

9.08

Isoelectric Point (pI)

43.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019012)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0051881
rosa_multiflora	Rmu_sc0004753.1_g000014
rosa_roxburghii	Rroxscaffold_165G00436970 Rroxscaffold_1G00003450 Rroxscaffold_6G00425400
rosa_samantha	Rh3AG297900 Rh5AG452700 Rh5BG359400
rosa_wichuraiana	Rw3G026290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	605
AccII	CGCG	1 cut(s)	30
AciI	CCGC	5 cut(s)	93, 140, 164, 173, 176
AclWI	GGATC	1 cut(s)	249
AcoI	YGGCCR	1 cut(s)	465
AcsI	RAATTY	1 cut(s)	22
AcuI	CTGAAG	1 cut(s)	82
AfaI	GTAC	1 cut(s)	554
AgsI	TTSAA	7 cut(s)	126, 151, 183, 374, 456, 563, 635
AluBI	AGCT	7 cut(s)	202, 256, 266, 426, 496, 572, 610
AluI	AGCT	7 cut(s)	202, 256, 266, 426, 496, 572, 610
AlwI	GGATC	1 cut(s)	249
AoxI	GGCC	2 cut(s)	170, 465
ApeKI	GCWGC	1 cut(s)	68
ApoI	RAATTY	1 cut(s)	22
ArsI	GACNNNNNNTTYG	2 cut(s)	45, 77
AspLEI	GCGC	1 cut(s)	89
AsuHPI	GGTGA	3 cut(s)	28, 126, 496
BbsI	GAAGAC	1 cut(s)	444
BbvCI	CCTCAGC	1 cut(s)	611
BbvI	GCAGC	1 cut(s)	80
BccI	CCATC	1 cut(s)	341
BciVI	GTATCC	1 cut(s)	584
BfaI	CTAG	1 cut(s)	527
BfoI	RGCGCY	1 cut(s)	90
BfuI	GTATCC	1 cut(s)	584
BglI	GCCNNNNNGGC	1 cut(s)	169
BglII	AGATCT	1 cut(s)	101
BisI	GCNGC	5 cut(s)	69, 141, 164, 173, 176
BlsI	GCNGC	5 cut(s)	70, 142, 165, 174, 177
BmsI	GCATC	2 cut(s)	301, 535
BpiI	GAAGAC	1 cut(s)	444
Bpu10I	CCTNAGC	1 cut(s)	611
BpuEI	CTTGAG	1 cut(s)	338
BsaBI	GATNNNNATC	1 cut(s)	302
BsaJI	CCNNGG	2 cut(s)	75, 167
Bse118I	RCCGGY	1 cut(s)	136
Bse8I	GATNNNNATC	1 cut(s)	302
BseDI	CCNNGG	2 cut(s)	75, 167
BseGI	GGATG	2 cut(s)	303, 352
BseJI	GATNNNNATC	1 cut(s)	302
BseMII	CTCAG	2 cut(s)	564, 602
BseXI	GCAGC	1 cut(s)	80
BseYI	CCCAGC	1 cut(s)	202
Bsh1236I	CGCG	1 cut(s)	30
BshFI	GGCC	2 cut(s)	172, 467
BsiSI	CCGG	1 cut(s)	137
BslFI	GGGAC	1 cut(s)	219
BsmFI	GGGAC	1 cut(s)	219
BsnI	GGCC	2 cut(s)	172, 467
Bsp143I	GATC	4 cut(s)	101, 241, 490, 538
BspACI	CCGC	5 cut(s)	93, 140, 164, 173, 176
BspANI	GGCC	2 cut(s)	172, 467
BspCNI	CTCAG	2 cut(s)	565, 603
BspFNI	CGCG	1 cut(s)	30
BspPI	GGATC	1 cut(s)	249
BsrFI	RCCGGY	1 cut(s)	136
BssAI	RCCGGY	1 cut(s)	136
BssECI	CCNNGG	2 cut(s)	75, 167
BssMI	GATC	4 cut(s)	101, 241, 490, 538
BssT1I	CCWWGG	2 cut(s)	75, 167
Bst4CI	ACNGT	2 cut(s)	437, 450
Bst6I	CTCTTC	2 cut(s)	146, 251
BstDEI	CTNAG	4 cut(s)	144, 215, 573, 611
BstF5I	GGATG	2 cut(s)	303, 352
BstFNI	CGCG	1 cut(s)	30
BstH2I	RGCGCY	1 cut(s)	90
BstHHI	GCGC	1 cut(s)	89
BstKTI	GATC	4 cut(s)	104, 244, 493, 541
BstMBI	GATC	4 cut(s)	101, 241, 490, 538
BstMWI	GCNNNNNNNGC	3 cut(s)	169, 172, 473
BstNSI	RCATGY	1 cut(s)	632
BstUI	CGCG	1 cut(s)	30
BstV1I	GCAGC	1 cut(s)	80
BstV2I	GAAGAC	1 cut(s)	444
BstX2I	RGATCY	2 cut(s)	101, 241
BstYI	RGATCY	2 cut(s)	101, 241
BsuI	GTATCC	1 cut(s)	584
BsuRI	GGCC	2 cut(s)	172, 467
BtsCI	GGATG	2 cut(s)	303, 352
CfoI	GCGC	1 cut(s)	89
Cfr10I	RCCGGY	1 cut(s)	136
CseI	GACGC	1 cut(s)	216
Csp6I	GTAC	1 cut(s)	553
CviAII	CATG	5 cut(s)	229, 517, 549, 556, 629
CviQI	GTAC	1 cut(s)	553
DdeI	CTNAG	4 cut(s)	144, 215, 573, 611
DpnI	GATC	4 cut(s)	103, 243, 492, 540
DpnII	GATC	4 cut(s)	101, 241, 490, 538
EaeI	YGGCCR	1 cut(s)	465
Eam1104I	CTCTTC	2 cut(s)	146, 251
EarI	CTCTTC	2 cut(s)	146, 251
EciI	GGCGGA	1 cut(s)	82
Eco130I	CCWWGG	2 cut(s)	75, 167
Eco57I	CTGAAG	1 cut(s)	82
EcoRI	GAATTC	1 cut(s)	22
EcoT14I	CCWWGG	2 cut(s)	75, 167
EcoT22I	ATGCAT	1 cut(s)	550
ErhI	CCWWGG	2 cut(s)	75, 167
FaeI	CATG	5 cut(s)	232, 520, 552, 559, 632
FaqI	GGGAC	1 cut(s)	219
FatI	CATG	5 cut(s)	228, 516, 548, 555, 628
Fnu4HI	GCNGC	5 cut(s)	69, 141, 164, 173, 176
FokI	GGATG	2 cut(s)	310, 359
Fsp4HI	GCNGC	5 cut(s)	69, 141, 164, 173, 176
FspBI	CTAG	1 cut(s)	527
GlaI	GCGC	1 cut(s)	88
GluI	GCNGC	5 cut(s)	69, 141, 164, 173, 176
GsaI	CCCAGC	1 cut(s)	206
HaeII	RGCGCY	1 cut(s)	90
HaeIII	GGCC	2 cut(s)	172, 467
HapII	CCGG	1 cut(s)	137
HgaI	GACGC	1 cut(s)	216
HhaI	GCGC	1 cut(s)	89
Hin1II	CATG	5 cut(s)	232, 520, 552, 559, 632
Hin6I	GCGC	1 cut(s)	87
HinP1I	GCGC	1 cut(s)	87
HinfI	GANTC	3 cut(s)	32, 122, 154
HpaII	CCGG	1 cut(s)	137
HphI	GGTGA	3 cut(s)	28, 126, 496
Hpy188I	TCNGA	3 cut(s)	101, 308, 364
Hpy188III	TCNNGA	5 cut(s)	42, 239, 285, 536, 542
Hpy99I	CGWCG	2 cut(s)	254, 286
HpyAV	CCTTC	4 cut(s)	106, 141, 189, 337
HpyCH4III	ACNGT	2 cut(s)	437, 450
HpyCH4IV	ACGT	4 cut(s)	196, 281, 376, 412
HpyCH4V	TGCA	4 cut(s)	68, 278, 548, 628
HpyF10VI	GCNNNNNNNGC	3 cut(s)	169, 172, 473
HpyF3I	CTNAG	4 cut(s)	144, 215, 573, 611
HpySE526I	ACGT	4 cut(s)	196, 281, 376, 412
Hsp92II	CATG	5 cut(s)	232, 520, 552, 559, 632
HspAI	GCGC	1 cut(s)	87
Kzo9I	GATC	4 cut(s)	101, 241, 490, 538
LpnPI	CCDG	7 cut(s)	27, 150, 188, 224, 403, 507, 549
Lsp1109I	GCAGC	1 cut(s)	80
LweI	GCATC	2 cut(s)	301, 535
MaeI	CTAG	1 cut(s)	527
MaeII	ACGT	4 cut(s)	196, 281, 376, 412
MaeIII	GTNAC	1 cut(s)	484
MalI	GATC	4 cut(s)	103, 243, 492, 540
MboI	GATC	4 cut(s)	101, 241, 490, 538
MboII	GAAGA	4 cut(s)	163, 238, 444, 589
MflI	RGATCY	2 cut(s)	101, 241
MluCI	AATT	6 cut(s)	6, 22, 45, 407, 509, 599
MlyI	GAGTC	1 cut(s)	163
MnlI	CCTC	9 cut(s)	12, 82, 100, 198, 246, 313, 397, 487, 606
Mph1103I	ATGCAT	1 cut(s)	550
MseI	TTAA	1 cut(s)	339
MspI	CCGG	1 cut(s)	137
MvnI	CGCG	1 cut(s)	30
MwoI	GCNNNNNNNGC	3 cut(s)	169, 172, 473
NdeII	GATC	4 cut(s)	101, 241, 490, 538
NlaIII	CATG	5 cut(s)	232, 520, 552, 559, 632
NmuCI	GTSAC	1 cut(s)	484
NsiI	ATGCAT	1 cut(s)	550
NspI	RCATGY	1 cut(s)	632
PfeI	GAWTC	2 cut(s)	32, 122
PkrI	GCNGC	5 cut(s)	70, 142, 165, 174, 177
PleI	GAGTC	1 cut(s)	162
PpsI	GAGTC	1 cut(s)	162
PsiI	TTATAA	1 cut(s)	605
PspFI	CCCAGC	1 cut(s)	202
PsuI	RGATCY	2 cut(s)	101, 241
RsaI	GTAC	1 cut(s)	554
RsaNI	GTAC	1 cut(s)	553
SaqAI	TTAA	1 cut(s)	339
SatI	GCNGC	5 cut(s)	69, 141, 164, 173, 176
Sau3AI	GATC	4 cut(s)	101, 241, 490, 538
SchI	GAGTC	1 cut(s)	163
SfaNI	GCATC	2 cut(s)	301, 535
SgrAI	CRCCGGYG	1 cut(s)	136
SmlI	CTYRAG	1 cut(s)	317
SmoI	CTYRAG	1 cut(s)	317
Sse9I	AATT	6 cut(s)	6, 22, 45, 407, 509, 599
SsiI	CCGC	5 cut(s)	93, 140, 164, 173, 176
SspMI	CTAG	1 cut(s)	527
StyI	CCWWGG	2 cut(s)	75, 167
TaaI	ACNGT	2 cut(s)	437, 450
TaiI	ACGT	4 cut(s)	199, 284, 379, 415
TaqI	TCGA	2 cut(s)	252, 284
TasI	AATT	6 cut(s)	6, 22, 45, 407, 509, 599
TauI	GCSGC	4 cut(s)	143, 166, 175, 178
TfiI	GAWTC	2 cut(s)	32, 122
Tru1I	TTAA	1 cut(s)	339
Tru9I	TTAA	1 cut(s)	339
TseFI	GTSAC	1 cut(s)	484
TseI	GCWGC	1 cut(s)	68
Tsp45I	GTSAC	1 cut(s)	484
TspDTI	ATGAA	2 cut(s)	72, 245
TspGWI	ACGGA	1 cut(s)	213
XapI	RAATTY	1 cut(s)	22
XceI	RCATGY	1 cut(s)	632
XcmI	CCANNNNNNNNNTGG	1 cut(s)	235
XspI	CTAG	1 cut(s)	527
Zsp2I	ATGCAT	1 cut(s)	550

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.