Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0019415

Physical Location & Seq

Genomic Coordinates Reverse (-)

65349995 .. 65357589

Gene Structure 7595 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ33669

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1275 bp

ATGTTTGTTCATGTTAATCTAACATTTCTGCCTTGGTACAATGCATATAGGTTCCTCGTTCAACAATCTAAAAGTCTCAATGCGCCTTTCCTCCCTTTTGATCAAACTACTGTACAGAAGTCATCTAATGTGCTTGACCAGTGGATCAACTCAGCCACAGAGTCTCTTGTGCATTTTTTCTGTCAAGAGATGGATGCTTACCGACTCTACACGGTGGTGCCATATCTTTTGAAGTTTCTTGACAACTTGACAAACATCTATGTAAGGTTGAATCGCACGAGGCTGAAGCTAAAGGGTACTAACGAAGAAGATTGCAGGATGAGACTCTCTACTCTTTTCCATGTCCTTTTAGTGTCATGTAAAGTGATGGCACCATTAACACCGTTCTTCATTGAAGCCCTTTACCAAAATATGCTAAAAGTTCTGAATGATGAAGAGGAAAGCTTGCATTACTGCAGTTTCCCTCAAGTACAAGGAAAGAGGGACGCTCGTATCGAGCAAAGTGTTGCAAGGATGAAGACAGTAATCGATCTTGCTCGTAATATTCGCGAACGTCACAACAAGCCTCTCAAAACACCCCTAAAAGAGATGGTCATTGTTCACCCTGATGCAGACTTTCTTGAAGACACTGATGCCAAGCTAAGAGAATATGTGCTTGATGAACTTAATGTGCAATCTCTAGTCCTGTGCAATGATACACTGAAGTATACTTCATCGCGCGCAGAGCCTGACTTCAGTGTGTTAGGTAAGCGGCTAGGAAAATCTATGGGAGTTGTTTCCAAACAAGTCAAGGCCAGGTCACAGGAGAGTATCTTAGAATTCGAGAAAACTGGAGAGGTTACTCTTTGTGGTCATTCTCTAAAGCTCAATGATATTAAGGTTGTTAGAGACTTCAAATGTCCTGATGGCACAACAGAGAAGGAGATTGATGCATCAGGAGATGGTGATGTTCTGGTGATCTTGGATTTGCATCAAGACGAATCATTGTTTGAGGCAGGTGTTGCTCGTGAGATTGTTAGCAGAGTTCAGAAGTTGAGGAAGAAATCTGGCCTTGGACTCACTAACATTGTGGAGATGTACTTTGAGTCTTTGGATGAAGATAAATCAGTCTCGGACCGAGTTTTGCATTTGCAGGAACAATACATTAAGGATGCCATAGGTTCGCCAATGCTTCCTTGCGGTGTGAGGCCATCACATGCTGTTGTGCTTGGGGAGGAGAATTTCCGTGGAGTATCTGGAATGTCATTTAATATCAGTTTGGTTCGACCTATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004822 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006428 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0017101 GO:0019538 GO:0019752 GO:0019899 GO:0032991 GO:0034641 GO:0034645 GO:0034660 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0051020 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

Anticodon_1 tRNA-synt_1

Protein Analysis

424

Amino Acids

48.41

Weight (kDa)

6.24

Isoelectric Point (pI)

40.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Anticodon_1	PF08264	46 - 196	2e-22	Anticodon-binding domain of tRNA ligase
DUF5915	PF19302	216 - 370	5.4e-25	Domain of unknown function (DUF5915)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019415)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0060191
rosa_multiflora	Rmu_sc0003366.1_g000009
rosa_samantha	Rh5AG392300 Rh5BG404800 Rh5CG428900 Rh5DG420400 Rh5DG420500
rosa_wichuraiana	Rw5G036980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	986
Acc36I	ACCTGC	1 cut(s)	986
AccB1I	GGYRCC	2 cut(s)	217, 370
AccI	GTMKAC	1 cut(s)	707
AccII	CGCG	3 cut(s)	549, 718, 720
AciI	CCGC	2 cut(s)	751, 1179
AclWI	GGATC	1 cut(s)	152
AcsI	RAATTY	2 cut(s)	818, 1219
AcuI	CTGAAG	3 cut(s)	305, 718, 722
AfaI	GTAC	5 cut(s)	38, 114, 298, 471, 1079
AgsI	TTSAA	6 cut(s)	62, 232, 271, 395, 623, 895
AjnI	CCWGG	1 cut(s)	794
AleI	CACNNNNGTG	1 cut(s)	215
AluBI	AGCT	4 cut(s)	289, 444, 640, 865
AluI	AGCT	4 cut(s)	289, 444, 640, 865
Alw26I	GTCTC	5 cut(s)	80, 168, 316, 882, 1114
AlwI	GGATC	1 cut(s)	152
AlwNI	CAGNNNCTG	1 cut(s)	728
AoxI	GGCC	3 cut(s)	792, 1048, 1187
ApoI	RAATTY	2 cut(s)	818, 1219
AspLEI	GCGC	3 cut(s)	85, 720, 722
AspS9I	GGNCC	1 cut(s)	1114
AsuHPI	GGTGA	3 cut(s)	593, 956, 967
AvaII	GGWCC	1 cut(s)	1114
BaeI	ACNNNNGTAYC	2 cut(s)	475, 508
BanI	GGYRCC	2 cut(s)	217, 370
BauI	CACGAG	2 cut(s)	277, 1005
BbsI	GAAGAC	2 cut(s)	524, 630
BccI	CCATC	6 cut(s)	184, 361, 583, 899, 935, 1198
BciT130I	CCWGG	1 cut(s)	796
BclI	TGATCA	1 cut(s)	100
BcoDI	GTCTC	5 cut(s)	80, 168, 316, 882, 1114
BfaI	CTAG	3 cut(s)	680, 755, 1273
BfmI	CTRYAG	1 cut(s)	454
BfuAI	ACCTGC	1 cut(s)	986
BisI	GCNGC	1 cut(s)	752
BlsI	GCNGC	1 cut(s)	753
Bme1390I	CCNGG	1 cut(s)	796
Bme18I	GGWCC	1 cut(s)	1114
BmgT120I	GGNCC	1 cut(s)	1114
BmiI	GGNNCC	3 cut(s)	53, 219, 372
BmrFI	CCNGG	1 cut(s)	796
BmsI	GCATC	7 cut(s)	184, 598, 622, 919, 941, 979, 1141
BpiI	GAAGAC	2 cut(s)	524, 630
BplI	GAGNNNNNCTC	2 cut(s)	472, 504
BpmI	CTGGAG	1 cut(s)	852
BpuEI	CTTGAG	1 cut(s)	450
Bsa29I	ATCGAT	1 cut(s)	528
BsaBI	GATNNNNATC	1 cut(s)	969
BsaJI	CCNNGG	3 cut(s)	32, 1051, 1225
Bse1I	ACTGG	2 cut(s)	139, 835
Bse3DI	GCAATG	1 cut(s)	697
Bse8I	GATNNNNATC	1 cut(s)	969
BseBI	CCWGG	1 cut(s)	796
BseCI	ATCGAT	1 cut(s)	528
BseDI	CCNNGG	3 cut(s)	32, 1051, 1225
BseGI	GGATG	5 cut(s)	199, 324, 519, 1099, 1156
BseJI	GATNNNNATC	1 cut(s)	969
BseMI	GCAATG	1 cut(s)	697
BseMII	CTCAG	1 cut(s)	165
BseNI	ACTGG	2 cut(s)	139, 835
BsePI	GCGCGC	1 cut(s)	718
BseRI	GAGGAG	1 cut(s)	1229
Bsh1236I	CGCG	3 cut(s)	549, 718, 720
BshFI	GGCC	3 cut(s)	794, 1050, 1189
BshNI	GGYRCC	2 cut(s)	217, 370
BshVI	ATCGAT	1 cut(s)	528
BslFI	GGGAC	1 cut(s)	497
BsmAI	GTCTC	5 cut(s)	80, 168, 316, 882, 1114
BsmFI	GGGAC	1 cut(s)	497
BsnI	GGCC	3 cut(s)	794, 1050, 1189
Bsp1407I	TGTACA	1 cut(s)	112
Bsp143I	GATC	4 cut(s)	100, 144, 529, 957
Bsp68I	TCGCGA	1 cut(s)	549
BspACI	CCGC	2 cut(s)	751, 1179
BspANI	GGCC	3 cut(s)	794, 1050, 1189
BspCNI	CTCAG	1 cut(s)	164
BspDI	ATCGAT	1 cut(s)	528
BspFNI	CGCG	3 cut(s)	549, 718, 720
BspLI	GGNNCC	3 cut(s)	53, 219, 372
BspMAI	CTGCAG	1 cut(s)	458
BspMI	ACCTGC	1 cut(s)	986
BspPI	GGATC	1 cut(s)	152
BspT107I	GGYRCC	2 cut(s)	217, 370
BsrDI	GCAATG	1 cut(s)	697
BsrGI	TGTACA	1 cut(s)	112
BsrI	ACTGG	2 cut(s)	139, 835
BssECI	CCNNGG	3 cut(s)	32, 1051, 1225
BssHII	GCGCGC	1 cut(s)	718
BssMI	GATC	4 cut(s)	100, 144, 529, 957
BssNAI	GTATAC	1 cut(s)	708
BssSI	CACGAG	2 cut(s)	277, 1005
BssT1I	CCWWGG	2 cut(s)	32, 1051
Bst1107I	GTATAC	1 cut(s)	708
Bst2BI	CACGAG	2 cut(s)	277, 1005
Bst2UI	CCWGG	1 cut(s)	796
Bst4CI	ACNGT	4 cut(s)	112, 214, 384, 523
Bst6I	CTCTTC	1 cut(s)	429
BstAPI	GCANNNNNTGC	1 cut(s)	1001
BstAUI	TGTACA	1 cut(s)	112
BstC8I	GCNNGC	2 cut(s)	446, 720
BstDEI	CTNAG	3 cut(s)	151, 641, 814
BstDSI	CCRYGG	1 cut(s)	1225
BstF5I	GGATG	5 cut(s)	199, 324, 519, 1099, 1156
BstFNI	CGCG	3 cut(s)	549, 718, 720
BstHHI	GCGC	3 cut(s)	85, 720, 722
BstKTI	GATC	4 cut(s)	103, 147, 532, 960
BstMAI	GTCTC	5 cut(s)	80, 168, 316, 882, 1114
BstMBI	GATC	4 cut(s)	100, 144, 529, 957
BstMWI	GCNNNNNNNGC	2 cut(s)	724, 1001
BstNI	CCWGG	1 cut(s)	796
BstNSI	RCATGY	1 cut(s)	1199
BstSCI	CCNGG	1 cut(s)	794
BstSFI	CTRYAG	1 cut(s)	454
BstUI	CGCG	3 cut(s)	549, 718, 720
BstV2I	GAAGAC	2 cut(s)	524, 630
BstZ17I	GTATAC	1 cut(s)	708
Bsu15I	ATCGAT	1 cut(s)	528
BsuRI	GGCC	3 cut(s)	794, 1050, 1189
BsuTUI	ATCGAT	1 cut(s)	528
BtgI	CCRYGG	1 cut(s)	1225
BtgZI	GCGATG	1 cut(s)	699
BtsCI	GGATG	5 cut(s)	199, 324, 519, 1099, 1156
BtsIMutI	CAGTG	4 cut(s)	146, 627, 698, 742
BtuMI	TCGCGA	1 cut(s)	549
BveI	ACCTGC	1 cut(s)	986
Cac8I	GCNNGC	2 cut(s)	446, 720
CaiI	CAGNNNCTG	1 cut(s)	728
CfoI	GCGC	3 cut(s)	85, 720, 722
Cfr13I	GGNCC	1 cut(s)	1114
ClaI	ATCGAT	1 cut(s)	528
CpoI	CGGWCCG	1 cut(s)	1114
CseI	GACGC	1 cut(s)	494
Csp6I	GTAC	5 cut(s)	37, 113, 297, 470, 1078
CspI	CGGWCCG	1 cut(s)	1114
CviAII	CATG	4 cut(s)	11, 341, 357, 1196
CviQI	GTAC	5 cut(s)	37, 113, 297, 470, 1078
DdeI	CTNAG	3 cut(s)	151, 641, 814
DpnI	GATC	4 cut(s)	102, 146, 531, 959
DpnII	GATC	4 cut(s)	100, 144, 529, 957
Eam1104I	CTCTTC	1 cut(s)	429
EarI	CTCTTC	1 cut(s)	429
Eco130I	CCWWGG	2 cut(s)	32, 1051
Eco47I	GGWCC	1 cut(s)	1114
Eco57I	CTGAAG	3 cut(s)	305, 718, 722
EcoRI	GAATTC	1 cut(s)	818
EcoRII	CCWGG	1 cut(s)	794
EcoT14I	CCWWGG	2 cut(s)	32, 1051
EcoT22I	ATGCAT	2 cut(s)	46, 934
ErhI	CCWWGG	2 cut(s)	32, 1051
FaeI	CATG	4 cut(s)	14, 344, 360, 1199
FaqI	GGGAC	1 cut(s)	497
FatI	CATG	4 cut(s)	10, 340, 356, 1195
FbaI	TGATCA	1 cut(s)	100
FblI	GTMKAC	1 cut(s)	707
Fnu4HI	GCNGC	1 cut(s)	752
FokI	GGATG	5 cut(s)	206, 331, 526, 1106, 1163
Fsp4HI	GCNGC	1 cut(s)	752
FspBI	CTAG	3 cut(s)	680, 755, 1273
GlaI	GCGC	3 cut(s)	84, 719, 721
GluI	GCNGC	1 cut(s)	752
GsuI	CTGGAG	1 cut(s)	852
HaeIII	GGCC	3 cut(s)	794, 1050, 1189
HgaI	GACGC	1 cut(s)	494
HhaI	GCGC	3 cut(s)	85, 720, 722
Hin1II	CATG	4 cut(s)	14, 344, 360, 1199
Hin6I	GCGC	3 cut(s)	83, 718, 720
HinP1I	GCGC	3 cut(s)	83, 718, 720
HindIII	AAGCTT	1 cut(s)	442
HinfI	GANTC	7 cut(s)	161, 204, 271, 324, 980, 1056, 1085
HphI	GGTGA	3 cut(s)	593, 956, 967
Hpy166II	GTNNAC	2 cut(s)	601, 708
Hpy188I	TCNGA	3 cut(s)	426, 1029, 1114
Hpy8I	GTNNAC	2 cut(s)	601, 708
HpyAV	CCTTC	1 cut(s)	913
HpyCH4III	ACNGT	4 cut(s)	112, 214, 384, 523
HpyCH4IV	ACGT	1 cut(s)	553
HpyF10VI	GCNNNNNNNGC	2 cut(s)	724, 1001
HpyF3I	CTNAG	3 cut(s)	151, 641, 814
HpySE526I	ACGT	1 cut(s)	553
Hsp92II	CATG	4 cut(s)	14, 344, 360, 1199
HspAI	GCGC	3 cut(s)	83, 718, 720
Ksp22I	TGATCA	1 cut(s)	100
Kzo9I	GATC	4 cut(s)	100, 144, 529, 957
LweI	GCATC	7 cut(s)	184, 598, 622, 919, 941, 979, 1141
MaeI	CTAG	3 cut(s)	680, 755, 1273
MaeII	ACGT	1 cut(s)	553
MaeIII	GTNAC	3 cut(s)	554, 798, 838
MalI	GATC	4 cut(s)	102, 146, 531, 959
MboI	GATC	4 cut(s)	100, 144, 529, 957
MboII	GAAGA	8 cut(s)	317, 320, 379, 446, 529, 635, 1051, 1109
MluCI	AATT	2 cut(s)	818, 1219
MlyI	GAGTC	5 cut(s)	170, 198, 318, 1050, 1094
Mph1103I	ATGCAT	2 cut(s)	46, 934
MseI	TTAA	6 cut(s)	15, 377, 666, 876, 1146, 1248
MslI	CAYNNNNRTG	2 cut(s)	215, 606
MspR9I	CCNGG	1 cut(s)	796
MvaI	CCWGG	1 cut(s)	796
MvnI	CGCG	3 cut(s)	549, 718, 720
MwoI	GCNNNNNNNGC	2 cut(s)	724, 1001
NdeII	GATC	4 cut(s)	100, 144, 529, 957
NlaIII	CATG	4 cut(s)	14, 344, 360, 1199
NlaIV	GGNNCC	3 cut(s)	53, 219, 372
NmuCI	GTSAC	2 cut(s)	554, 798
NruI	TCGCGA	1 cut(s)	549
NsiI	ATGCAT	2 cut(s)	46, 934
NspI	RCATGY	1 cut(s)	1199
OliI	CACNNNNGTG	1 cut(s)	215
PaqCI	CACCTGC	1 cut(s)	986
PauI	GCGCGC	1 cut(s)	718
PcsI	WCGNNNNNNNCGW	1 cut(s)	492
PfeI	GAWTC	2 cut(s)	271, 980
PkrI	GCNGC	1 cut(s)	753
PleI	GAGTC	5 cut(s)	169, 198, 318, 1050, 1093
PpsI	GAGTC	5 cut(s)	169, 198, 318, 1050, 1093
Psp6I	CCWGG	1 cut(s)	794
PspGI	CCWGG	1 cut(s)	794
PspN4I	GGNNCC	3 cut(s)	53, 219, 372
PspPI	GGNCC	1 cut(s)	1114
PstI	CTGCAG	1 cut(s)	458
PstNI	CAGNNNCTG	1 cut(s)	728
PteI	GCGCGC	1 cut(s)	718
RruI	TCGCGA	1 cut(s)	549
RsaI	GTAC	5 cut(s)	38, 114, 298, 471, 1079
RsaNI	GTAC	5 cut(s)	37, 113, 297, 470, 1078
RseI	CAYNNNNRTG	2 cut(s)	215, 606
Rsr2I	CGGWCCG	1 cut(s)	1114
RsrII	CGGWCCG	1 cut(s)	1114
SaqAI	TTAA	6 cut(s)	15, 377, 666, 876, 1146, 1248
SatI	GCNGC	1 cut(s)	752
Sau3AI	GATC	4 cut(s)	100, 144, 529, 957
Sau96I	GGNCC	1 cut(s)	1114
SchI	GAGTC	5 cut(s)	170, 198, 318, 1050, 1094
ScrFI	CCNGG	1 cut(s)	796
SfaNI	GCATC	7 cut(s)	184, 598, 622, 919, 941, 979, 1141
SfcI	CTRYAG	1 cut(s)	454
SinI	GGWCC	1 cut(s)	1114
SmiMI	CAYNNNNRTG	2 cut(s)	215, 606
SmlI	CTYRAG	1 cut(s)	465
SmoI	CTYRAG	1 cut(s)	465
Sse9I	AATT	2 cut(s)	818, 1219
SsiI	CCGC	2 cut(s)	751, 1179
SspI	AATATT	1 cut(s)	544
SspMI	CTAG	3 cut(s)	680, 755, 1273
StyD4I	CCNGG	1 cut(s)	794
StyI	CCWWGG	2 cut(s)	32, 1051
TaaI	ACNGT	4 cut(s)	112, 214, 384, 523
TaiI	ACGT	1 cut(s)	556
TaqI	TCGA	4 cut(s)	495, 528, 822, 1264
TaqII	GACCGA	1 cut(s)	1131
TasI	AATT	2 cut(s)	818, 1219
TatI	WGTACW	3 cut(s)	112, 469, 1077
TauI	GCSGC	1 cut(s)	754
TfiI	GAWTC	2 cut(s)	271, 980
Tru1I	TTAA	6 cut(s)	15, 377, 666, 876, 1146, 1248
Tru9I	TTAA	6 cut(s)	15, 377, 666, 876, 1146, 1248
TscAI	CASTG	4 cut(s)	146, 634, 705, 742
TseFI	GTSAC	2 cut(s)	554, 798
Tsp45I	GTSAC	2 cut(s)	554, 798
TspDTI	ATGAA	6 cut(s)	379, 447, 530, 675, 702, 1110
TspGWI	ACGGA	1 cut(s)	1214
TspRI	CASTG	4 cut(s)	146, 634, 705, 742
VpaK11BI	GGWCC	1 cut(s)	1114
XapI	RAATTY	2 cut(s)	818, 1219
XceI	RCATGY	1 cut(s)	1199
XmiI	GTMKAC	1 cut(s)	707
XspI	CTAG	3 cut(s)	680, 755, 1273
Zsp2I	ATGCAT	2 cut(s)	46, 934

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.