Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0019415

Physical Location & Seq

Genomic Coordinates Reverse (-)

65097277 .. 65098832

Gene Structure 1556 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G036980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGGCACCATTAACACCGTTCTTCACTGAAGCCCTTTACCAAAATATGCTAAAAGTTCTGAATGATGAAGAGGAAAGCTTGCATTACTGCAGTTTCCCTCAAGTACAAGGAAAGAGGGACGCTCGTATCGAGCAAAGTGTTGCAAGGATGAAGACAGTAATTGATCTTGCTCGTAATATTCGCGAACGTCACAACAAGCCTCTCAAAACACCCCAAAAAGAGATGGTCATTGTTCACCCTGATGCAGACTTTCTTGAAGACACTGATGCCAAGCTAAGAGAATATGTGCTTGAAGAACTTAATGTGCAATCTCTAGTCCTGTGCAATGATACACTGAAGTATACTTCATTGCGCGCAGAGCCTGACTTCAGTGTGTTAGGTAAGCGGCTAGGAAAATCTATGGGAGTTGTTTCCAAACAAGTCAAGGCCAGGTCACAGGAGAGTATCTTAGAATTCGAGAAAACTGGAGAGGTTACTCTTTGTGGTCGTTCTCTAAAGCTCAATGATATTAAGGTTGTTGGAGACTTCAAATGTTCTGATGGCACAACAGAGAAGGACATTGATGCATCCGGAGATGGTGTTGTTCTGGTGATCTTAGATTTGCATCAAGACGAATCATTGTTTGAGGCAGGTGTTGCTCGTGAGATTGTTAGCAAAGTTCAGAAGTTGAGGAAGAAATCTGGCCTTGGACTCACTGACATTGTGGAGATGTACTTTGAGTCTTTGGATGAAGATAAATCAGTCTCGGACCGAGTTTTGCATTTGCAGGAACAATACATTAAGGATGCCATAGGTTCGCCAATGCTTCCTTGCGGTGTGAGGCCATCACATGCTGTTGTGCTTGGGGAGGAGAATTTCCGTGGAGTATCTGGAATGTCATTTAATATCAGTTTGGTTCGACCTATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004822 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006428 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0017101 GO:0019538 GO:0019752 GO:0019899 GO:0032991 GO:0034641 GO:0034645 GO:0034660 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0051020 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

Anticodon_1 tRNA-synt_1

Protein Analysis

302

Amino Acids

33.86

Weight (kDa)

5.43

Isoelectric Point (pI)

42.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Anticodon_1	PF08264	1 - 73	3.7e-09	Anticodon-binding domain of tRNA ligase
DUF5915	PF19302	94 - 248	3.1e-26	Domain of unknown function (DUF5915)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019415)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0060191
rosa_multiflora	Rmu_sc0003366.1_g000009
rosa_samantha	Rh5AG392300 Rh5BG404800 Rh5CG428900 Rh5DG420400 Rh5DG420500
rosa_wichuraiana	Rw5G036980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	620
Acc36I	ACCTGC	1 cut(s)	620
AccB1I	GGYRCC	1 cut(s)	4
AccI	GTMKAC	1 cut(s)	341
AccII	CGCG	2 cut(s)	183, 354
AccIII	TCCGGA	1 cut(s)	569
AciI	CCGC	2 cut(s)	385, 813
AcsI	RAATTY	2 cut(s)	452, 853
AcuI	CTGAAG	3 cut(s)	48, 352, 356
AfaI	GTAC	2 cut(s)	105, 713
AgsI	TTSAA	3 cut(s)	257, 293, 529
AjnI	CCWGG	1 cut(s)	428
AluBI	AGCT	3 cut(s)	78, 274, 499
AluI	AGCT	3 cut(s)	78, 274, 499
Alw26I	GTCTC	2 cut(s)	516, 748
AlwNI	CAGNNNCTG	1 cut(s)	362
Aor13HI	TCCGGA	1 cut(s)	569
AoxI	GGCC	3 cut(s)	426, 682, 821
ApoI	RAATTY	2 cut(s)	452, 853
AspLEI	GCGC	2 cut(s)	354, 356
AspS9I	GGNCC	1 cut(s)	748
AsuHPI	GGTGA	2 cut(s)	227, 601
AvaII	GGWCC	1 cut(s)	748
BaeI	ACNNNNGTAYC	2 cut(s)	109, 142
BanI	GGYRCC	1 cut(s)	4
BauI	CACGAG	1 cut(s)	639
BbsI	GAAGAC	2 cut(s)	158, 264
BccI	CCATC	4 cut(s)	217, 533, 569, 832
BciT130I	CCWGG	1 cut(s)	430
BcoDI	GTCTC	2 cut(s)	516, 748
BfaI	CTAG	3 cut(s)	314, 389, 907
BfmI	CTRYAG	1 cut(s)	88
BfuAI	ACCTGC	1 cut(s)	620
BisI	GCNGC	1 cut(s)	386
BlsI	GCNGC	1 cut(s)	387
Bme1390I	CCNGG	1 cut(s)	430
Bme18I	GGWCC	1 cut(s)	748
BmgT120I	GGNCC	1 cut(s)	748
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	1 cut(s)	430
BmsI	GCATC	6 cut(s)	232, 256, 553, 575, 613, 775
BpiI	GAAGAC	2 cut(s)	158, 264
BplI	GAGNNNNNCTC	2 cut(s)	106, 138
BpmI	CTGGAG	1 cut(s)	486
BpuEI	CTTGAG	1 cut(s)	84
BsaBI	GATNNNNATC	1 cut(s)	603
BsaJI	CCNNGG	2 cut(s)	685, 859
BsaWI	WCCGGW	1 cut(s)	569
BsaXI	ACNNNNNCTCC	2 cut(s)	564, 594
Bse1I	ACTGG	1 cut(s)	469
Bse3DI	GCAATG	2 cut(s)	331, 347
Bse8I	GATNNNNATC	1 cut(s)	603
BseAI	TCCGGA	1 cut(s)	569
BseBI	CCWGG	1 cut(s)	430
BseDI	CCNNGG	2 cut(s)	685, 859
BseGI	GGATG	4 cut(s)	153, 566, 733, 790
BseJI	GATNNNNATC	1 cut(s)	603
BseMI	GCAATG	2 cut(s)	331, 347
BseNI	ACTGG	1 cut(s)	469
BsePI	GCGCGC	1 cut(s)	352
BseRI	GAGGAG	1 cut(s)	863
Bsh1236I	CGCG	2 cut(s)	183, 354
BshFI	GGCC	3 cut(s)	428, 684, 823
BshNI	GGYRCC	1 cut(s)	4
BsiSI	CCGG	1 cut(s)	570
BslFI	GGGAC	1 cut(s)	131
BsmAI	GTCTC	2 cut(s)	516, 748
BsmFI	GGGAC	1 cut(s)	131
BsnI	GGCC	3 cut(s)	428, 684, 823
Bsp13I	TCCGGA	1 cut(s)	569
Bsp143I	GATC	2 cut(s)	163, 591
Bsp68I	TCGCGA	1 cut(s)	183
BspACI	CCGC	2 cut(s)	385, 813
BspANI	GGCC	3 cut(s)	428, 684, 823
BspEI	TCCGGA	1 cut(s)	569
BspFNI	CGCG	2 cut(s)	183, 354
BspLI	GGNNCC	1 cut(s)	6
BspMAI	CTGCAG	1 cut(s)	92
BspMI	ACCTGC	1 cut(s)	620
BspT107I	GGYRCC	1 cut(s)	4
BsrDI	GCAATG	2 cut(s)	331, 347
BsrI	ACTGG	1 cut(s)	469
BssECI	CCNNGG	2 cut(s)	685, 859
BssHII	GCGCGC	1 cut(s)	352
BssMI	GATC	2 cut(s)	163, 591
BssNAI	GTATAC	1 cut(s)	342
BssSI	CACGAG	1 cut(s)	639
BssT1I	CCWWGG	1 cut(s)	685
Bst1107I	GTATAC	1 cut(s)	342
Bst2BI	CACGAG	1 cut(s)	639
Bst2UI	CCWGG	1 cut(s)	430
Bst4CI	ACNGT	2 cut(s)	18, 157
Bst6I	CTCTTC	1 cut(s)	63
BstAPI	GCANNNNNTGC	1 cut(s)	635
BstC8I	GCNNGC	2 cut(s)	80, 354
BstDEI	CTNAG	3 cut(s)	275, 448, 595
BstDSI	CCRYGG	1 cut(s)	859
BstF5I	GGATG	4 cut(s)	153, 566, 733, 790
BstFNI	CGCG	2 cut(s)	183, 354
BstHHI	GCGC	2 cut(s)	354, 356
BstKTI	GATC	2 cut(s)	166, 594
BstMAI	GTCTC	2 cut(s)	516, 748
BstMBI	GATC	2 cut(s)	163, 591
BstMWI	GCNNNNNNNGC	2 cut(s)	358, 635
BstNI	CCWGG	1 cut(s)	430
BstNSI	RCATGY	1 cut(s)	833
BstSCI	CCNGG	1 cut(s)	428
BstSFI	CTRYAG	1 cut(s)	88
BstUI	CGCG	2 cut(s)	183, 354
BstV2I	GAAGAC	2 cut(s)	158, 264
BstZ17I	GTATAC	1 cut(s)	342
BsuRI	GGCC	3 cut(s)	428, 684, 823
BtgI	CCRYGG	1 cut(s)	859
BtsCI	GGATG	4 cut(s)	153, 566, 733, 790
BtsIMutI	CAGTG	5 cut(s)	24, 261, 332, 376, 693
BtuMI	TCGCGA	1 cut(s)	183
BveI	ACCTGC	1 cut(s)	620
Cac8I	GCNNGC	2 cut(s)	80, 354
CaiI	CAGNNNCTG	1 cut(s)	362
CfoI	GCGC	2 cut(s)	354, 356
Cfr13I	GGNCC	1 cut(s)	748
CpoI	CGGWCCG	1 cut(s)	748
CseI	GACGC	1 cut(s)	128
Csp6I	GTAC	2 cut(s)	104, 712
CspI	CGGWCCG	1 cut(s)	748
CviAII	CATG	1 cut(s)	830
CviQI	GTAC	2 cut(s)	104, 712
DdeI	CTNAG	3 cut(s)	275, 448, 595
DpnI	GATC	2 cut(s)	165, 593
DpnII	GATC	2 cut(s)	163, 591
Eam1104I	CTCTTC	1 cut(s)	63
EarI	CTCTTC	1 cut(s)	63
Eco130I	CCWWGG	1 cut(s)	685
Eco47I	GGWCC	1 cut(s)	748
Eco57I	CTGAAG	3 cut(s)	48, 352, 356
EcoRI	GAATTC	1 cut(s)	452
EcoRII	CCWGG	1 cut(s)	428
EcoT14I	CCWWGG	1 cut(s)	685
EcoT22I	ATGCAT	1 cut(s)	568
ErhI	CCWWGG	1 cut(s)	685
FaeI	CATG	1 cut(s)	833
FaiI	YATR	6 cut(s)	47, 285, 342, 401, 791, 831
FaqI	GGGAC	1 cut(s)	131
FatI	CATG	1 cut(s)	829
FblI	GTMKAC	1 cut(s)	341
Fnu4HI	GCNGC	1 cut(s)	386
FokI	GGATG	4 cut(s)	160, 553, 740, 797
Fsp4HI	GCNGC	1 cut(s)	386
FspBI	CTAG	3 cut(s)	314, 389, 907
GlaI	GCGC	2 cut(s)	353, 355
GluI	GCNGC	1 cut(s)	386
GsuI	CTGGAG	1 cut(s)	486
HaeIII	GGCC	3 cut(s)	428, 684, 823
HapII	CCGG	1 cut(s)	570
HgaI	GACGC	1 cut(s)	128
HhaI	GCGC	2 cut(s)	354, 356
Hin1II	CATG	1 cut(s)	833
Hin6I	GCGC	2 cut(s)	352, 354
HinP1I	GCGC	2 cut(s)	352, 354
HindIII	AAGCTT	1 cut(s)	76
HinfI	GANTC	3 cut(s)	614, 690, 719
HpaII	CCGG	1 cut(s)	570
HphI	GGTGA	2 cut(s)	227, 601
Hpy166II	GTNNAC	2 cut(s)	235, 342
Hpy188I	TCNGA	4 cut(s)	60, 538, 663, 748
Hpy188III	TCNNGA	7 cut(s)	182, 254, 457, 570, 608, 641, 870
Hpy8I	GTNNAC	2 cut(s)	235, 342
HpyAV	CCTTC	1 cut(s)	547
HpyCH4III	ACNGT	2 cut(s)	18, 157
HpyCH4IV	ACGT	1 cut(s)	187
HpyF10VI	GCNNNNNNNGC	2 cut(s)	358, 635
HpyF3I	CTNAG	3 cut(s)	275, 448, 595
HpySE526I	ACGT	1 cut(s)	187
Hsp92II	CATG	1 cut(s)	833
HspAI	GCGC	2 cut(s)	352, 354
Kpn2I	TCCGGA	1 cut(s)	569
Kzo9I	GATC	2 cut(s)	163, 591
LweI	GCATC	6 cut(s)	232, 256, 553, 575, 613, 775
MaeI	CTAG	3 cut(s)	314, 389, 907
MaeII	ACGT	1 cut(s)	187
MaeIII	GTNAC	3 cut(s)	188, 432, 472
MalI	GATC	2 cut(s)	165, 593
MboI	GATC	2 cut(s)	163, 591
MboII	GAAGA	7 cut(s)	13, 80, 163, 269, 305, 685, 743
MluCI	AATT	3 cut(s)	159, 452, 853
MlyI	GAGTC	2 cut(s)	684, 728
MmeI	TCCRAC	1 cut(s)	499
MnlI	CCTC	9 cut(s)	64, 108, 108, 210, 463, 619, 663, 813, 841
Mph1103I	ATGCAT	1 cut(s)	568
MroI	TCCGGA	1 cut(s)	569
MseI	TTAA	5 cut(s)	11, 300, 510, 780, 882
MslI	CAYNNNNRTG	1 cut(s)	240
MspI	CCGG	1 cut(s)	570
MspR9I	CCNGG	1 cut(s)	430
MvaI	CCWGG	1 cut(s)	430
MvnI	CGCG	2 cut(s)	183, 354
MwoI	GCNNNNNNNGC	2 cut(s)	358, 635
NdeII	GATC	2 cut(s)	163, 591
NlaIII	CATG	1 cut(s)	833
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	2 cut(s)	188, 432
NruI	TCGCGA	1 cut(s)	183
NsiI	ATGCAT	1 cut(s)	568
NspI	RCATGY	1 cut(s)	833
PaqCI	CACCTGC	1 cut(s)	620
PauI	GCGCGC	1 cut(s)	352
PcsI	WCGNNNNNNNCGW	1 cut(s)	126
PfeI	GAWTC	1 cut(s)	614
PkrI	GCNGC	1 cut(s)	387
PleI	GAGTC	2 cut(s)	684, 727
PpsI	GAGTC	2 cut(s)	684, 727
Psp6I	CCWGG	1 cut(s)	428
PspGI	CCWGG	1 cut(s)	428
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	1 cut(s)	748
PstI	CTGCAG	1 cut(s)	92
PstNI	CAGNNNCTG	1 cut(s)	362
PteI	GCGCGC	1 cut(s)	352
RruI	TCGCGA	1 cut(s)	183
RsaI	GTAC	2 cut(s)	105, 713
RsaNI	GTAC	2 cut(s)	104, 712
RseI	CAYNNNNRTG	1 cut(s)	240
Rsr2I	CGGWCCG	1 cut(s)	748
RsrII	CGGWCCG	1 cut(s)	748
SaqAI	TTAA	5 cut(s)	11, 300, 510, 780, 882
SatI	GCNGC	1 cut(s)	386
Sau3AI	GATC	2 cut(s)	163, 591
Sau96I	GGNCC	1 cut(s)	748
SchI	GAGTC	2 cut(s)	684, 728
ScrFI	CCNGG	1 cut(s)	430
SfaNI	GCATC	6 cut(s)	232, 256, 553, 575, 613, 775
SfcI	CTRYAG	1 cut(s)	88
SinI	GGWCC	1 cut(s)	748
SmiMI	CAYNNNNRTG	1 cut(s)	240
SmlI	CTYRAG	1 cut(s)	99
SmoI	CTYRAG	1 cut(s)	99
Sse9I	AATT	3 cut(s)	159, 452, 853
SsiI	CCGC	2 cut(s)	385, 813
SspI	AATATT	1 cut(s)	178
SspMI	CTAG	3 cut(s)	314, 389, 907
StyD4I	CCNGG	1 cut(s)	428
StyI	CCWWGG	1 cut(s)	685
TaaI	ACNGT	2 cut(s)	18, 157
TaiI	ACGT	1 cut(s)	190
TaqI	TCGA	3 cut(s)	129, 456, 898
TaqII	GACCGA	1 cut(s)	765
TasI	AATT	3 cut(s)	159, 452, 853
TatI	WGTACW	2 cut(s)	103, 711
TauI	GCSGC	1 cut(s)	388
TfiI	GAWTC	1 cut(s)	614
Tru1I	TTAA	5 cut(s)	11, 300, 510, 780, 882
Tru9I	TTAA	5 cut(s)	11, 300, 510, 780, 882
TscAI	CASTG	5 cut(s)	31, 268, 339, 376, 700
TseFI	GTSAC	2 cut(s)	188, 432
Tsp45I	GTSAC	2 cut(s)	188, 432
TspDTI	ATGAA	4 cut(s)	81, 164, 336, 744
TspGWI	ACGGA	1 cut(s)	848
TspRI	CASTG	5 cut(s)	31, 268, 339, 376, 700
VpaK11BI	GGWCC	1 cut(s)	748
XapI	RAATTY	2 cut(s)	452, 853
XceI	RCATGY	1 cut(s)	833
XmiI	GTMKAC	1 cut(s)	341
XspI	CTAG	3 cut(s)	314, 389, 907
Zsp2I	ATGCAT	1 cut(s)	568

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.