Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003366.1

Orthogroup ID

OG0019415

Physical Location & Seq

Genomic Coordinates Forward (+)

29554 .. 31015

Gene Structure 1462 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003366.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

atggaggttctcgatcaatatggggctgatgtagttcgaatgtatattatcaactctcctgttgttcgtgcagaaccattacgattcaagaaggaaggagtatatggagttgtcaaggatgtatttctgccttggtacaatgcatataggttcctcgttcaacaatctaaaagtctcaatgcgcctttcctcccttttgatcaaactactgtacagaagtcatctaatgtgcttgaccagtggatctactcagccacagagtctcttgtgcattttgtctgtcaagagatggatgcttaccgactctacacggtggtgccatatcttttgaagtttcttgacaacttgacaaacatctatgtaaggttgaatcgcacgaggctgaagctaaagggtactaacgaagaagattgcaggatgagactctctactcttttccatgtccttttagtgtcatgtaaagtgatggcaccattaacaccgttcttcactgaagccctttaccaaaatatgctaaaagttctgaatgatgaagaggaaagcttgcattactgcagtttccctcaagtacaaggaaagagggacgctcgtatcgagcaaagtgttgcaaggataagacatgatgccaatctaagagaatatgtgcttgaagaacttaatgtgcaatctctagtcctgtgcaatgatacactgaagtatacttcatcgcgcgcagagcctgacttcagtgtgttaggtaagcggctaggaaaatctatgggactcaatgatattaaggttgttagagacttcaaatgtcctgatggcacaacagagaaggagattgatgcatcaggagatggtgatgttctggtgatcttggatttgcatcaagacgaatcattgtttgaggcaggtgttgctcgtgagattgttagcagagttcagaagttgaggaagaaatctggccttggactcactgacattgtggagatgtactttgagtctttggatgaagataaatcagtctcggaccgagttttgcatttgcaggaacaatacattaaggatgccataggttcgccaatgtttccttgcggtgtgaggccatcacatgctgttgtgcttggggaggagaatttccgtggagtatctggaatgtcatttaatatcaggttggttcgacctatctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004822 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006428 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0017101 GO:0019538 GO:0019752 GO:0019899 GO:0032991 GO:0034641 GO:0034645 GO:0034660 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0051020 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

Anticodon_1 tRNA-synt_1

Protein Analysis

390

Amino Acids

44.65

Weight (kDa)

5.9

Isoelectric Point (pI)

39.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019415)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0060191
rosa_multiflora	Rmu_sc0003366.1_g000009
rosa_samantha	Rh5AG392300 Rh5BG404800 Rh5CG428900 Rh5DG420400 Rh5DG420500
rosa_wichuraiana	Rw5G036980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	884
Acc36I	ACCTGC	1 cut(s)	884
AccB1I	GGYRCC	2 cut(s)	316, 469
AccI	GTMKAC	1 cut(s)	698
AccII	CGCG	2 cut(s)	709, 711
AciI	CCGC	2 cut(s)	742, 1077
AclWI	GGATC	1 cut(s)	251
AcsI	RAATTY	1 cut(s)	1117
AcuI	CTGAAG	4 cut(s)	404, 513, 709, 713
AfaI	GTAC	5 cut(s)	137, 213, 397, 570, 977
AgsI	TTSAA	6 cut(s)	88, 161, 331, 370, 650, 793
AleI	CACNNNNGTG	1 cut(s)	314
AluBI	AGCT	2 cut(s)	388, 543
AluI	AGCT	2 cut(s)	388, 543
Alw26I	GTCTC	5 cut(s)	179, 267, 415, 780, 1012
AlwI	GGATC	1 cut(s)	251
AlwNI	CAGNNNCTG	1 cut(s)	719
AoxI	GGCC	2 cut(s)	946, 1085
ApoI	RAATTY	1 cut(s)	1117
AspLEI	GCGC	3 cut(s)	184, 711, 713
AspS9I	GGNCC	1 cut(s)	1012
AsuHPI	GGTGA	2 cut(s)	854, 865
AsuII	TTCGAA	1 cut(s)	37
AvaII	GGWCC	1 cut(s)	1012
BaeI	ACNNNNGTAYC	2 cut(s)	574, 607
BanI	GGYRCC	2 cut(s)	316, 469
BauI	CACGAG	2 cut(s)	376, 903
BccI	CCATC	5 cut(s)	283, 460, 797, 833, 1096
BclI	TGATCA	1 cut(s)	199
BcoDI	GTCTC	5 cut(s)	179, 267, 415, 780, 1012
BfaI	CTAG	3 cut(s)	671, 746, 1171
BfmI	CTRYAG	1 cut(s)	553
BfuAI	ACCTGC	1 cut(s)	884
BisI	GCNGC	1 cut(s)	743
BlsI	GCNGC	1 cut(s)	744
Bme18I	GGWCC	1 cut(s)	1012
BmgT120I	GGNCC	1 cut(s)	1012
BmiI	GGNNCC	3 cut(s)	152, 318, 471
BmsI	GCATC	6 cut(s)	283, 613, 817, 839, 877, 1039
BplI	GAGNNNNNCTC	2 cut(s)	571, 603
Bpu14I	TTCGAA	1 cut(s)	37
BpuEI	CTTGAG	1 cut(s)	549
BsaBI	GATNNNNATC	2 cut(s)	627, 867
BsaJI	CCNNGG	3 cut(s)	131, 949, 1123
Bse1I	ACTGG	1 cut(s)	238
Bse3DI	GCAATG	1 cut(s)	688
Bse8I	GATNNNNATC	2 cut(s)	627, 867
BseDI	CCNNGG	3 cut(s)	131, 949, 1123
BseGI	GGATG	5 cut(s)	124, 298, 423, 997, 1054
BseJI	GATNNNNATC	2 cut(s)	627, 867
BseMI	GCAATG	1 cut(s)	688
BseMII	CTCAG	1 cut(s)	264
BseNI	ACTGG	1 cut(s)	238
BsePI	GCGCGC	1 cut(s)	709
BseRI	GAGGAG	1 cut(s)	1127
BsgI	GTGCAG	1 cut(s)	90
Bsh1236I	CGCG	2 cut(s)	709, 711
BshFI	GGCC	2 cut(s)	948, 1087
BshNI	GGYRCC	2 cut(s)	316, 469
BslFI	GGGAC	2 cut(s)	596, 774
BsmAI	GTCTC	5 cut(s)	179, 267, 415, 780, 1012
BsmFI	GGGAC	2 cut(s)	596, 774
BsnI	GGCC	2 cut(s)	948, 1087
Bsp119I	TTCGAA	1 cut(s)	37
Bsp1407I	TGTACA	1 cut(s)	211
Bsp143I	GATC	4 cut(s)	13, 199, 243, 855
BspACI	CCGC	2 cut(s)	742, 1077
BspANI	GGCC	2 cut(s)	948, 1087
BspCNI	CTCAG	1 cut(s)	263
BspFNI	CGCG	2 cut(s)	709, 711
BspLI	GGNNCC	3 cut(s)	152, 318, 471
BspMAI	CTGCAG	1 cut(s)	557
BspMI	ACCTGC	1 cut(s)	884
BspPI	GGATC	1 cut(s)	251
BspT104I	TTCGAA	1 cut(s)	37
BspT107I	GGYRCC	2 cut(s)	316, 469
BsrDI	GCAATG	1 cut(s)	688
BsrGI	TGTACA	1 cut(s)	211
BsrI	ACTGG	1 cut(s)	238
BssECI	CCNNGG	3 cut(s)	131, 949, 1123
BssHII	GCGCGC	1 cut(s)	709
BssMI	GATC	4 cut(s)	13, 199, 243, 855
BssNAI	GTATAC	1 cut(s)	699
BssSI	CACGAG	2 cut(s)	376, 903
BssT1I	CCWWGG	2 cut(s)	131, 949
Bst1107I	GTATAC	1 cut(s)	699
Bst2BI	CACGAG	2 cut(s)	376, 903
Bst4CI	ACNGT	3 cut(s)	211, 313, 483
Bst6I	CTCTTC	1 cut(s)	528
BstAPI	GCANNNNNTGC	1 cut(s)	899
BstAUI	TGTACA	1 cut(s)	211
BstBI	TTCGAA	1 cut(s)	37
BstC8I	GCNNGC	2 cut(s)	545, 711
BstDEI	CTNAG	2 cut(s)	250, 632
BstDSI	CCRYGG	1 cut(s)	1123
BstF5I	GGATG	5 cut(s)	124, 298, 423, 997, 1054
BstFNI	CGCG	2 cut(s)	709, 711
BstHHI	GCGC	3 cut(s)	184, 711, 713
BstKTI	GATC	4 cut(s)	16, 202, 246, 858
BstMAI	GTCTC	5 cut(s)	179, 267, 415, 780, 1012
BstMBI	GATC	4 cut(s)	13, 199, 243, 855
BstMWI	GCNNNNNNNGC	2 cut(s)	715, 899
BstNSI	RCATGY	1 cut(s)	1097
BstSFI	CTRYAG	1 cut(s)	553
BstUI	CGCG	2 cut(s)	709, 711
BstX2I	RGATCY	1 cut(s)	243
BstYI	RGATCY	1 cut(s)	243
BstZ17I	GTATAC	1 cut(s)	699
BsuRI	GGCC	2 cut(s)	948, 1087
BtgI	CCRYGG	1 cut(s)	1123
BtgZI	GCGATG	1 cut(s)	690
BtsCI	GGATG	5 cut(s)	124, 298, 423, 997, 1054
BtsIMutI	CAGTG	5 cut(s)	245, 489, 689, 733, 957
BveI	ACCTGC	1 cut(s)	884
Cac8I	GCNNGC	2 cut(s)	545, 711
CaiI	CAGNNNCTG	1 cut(s)	719
CfoI	GCGC	3 cut(s)	184, 711, 713
Cfr13I	GGNCC	1 cut(s)	1012
CpoI	CGGWCCG	1 cut(s)	1012
CseI	GACGC	1 cut(s)	593
Csp6I	GTAC	5 cut(s)	136, 212, 396, 569, 976
CspI	CGGWCCG	1 cut(s)	1012
CviAII	CATG	4 cut(s)	440, 456, 620, 1094
CviQI	GTAC	5 cut(s)	136, 212, 396, 569, 976
DdeI	CTNAG	2 cut(s)	250, 632
DpnI	GATC	4 cut(s)	15, 201, 245, 857
DpnII	GATC	4 cut(s)	13, 199, 243, 855
Eam1104I	CTCTTC	1 cut(s)	528
EarI	CTCTTC	1 cut(s)	528
Eco130I	CCWWGG	2 cut(s)	131, 949
Eco47I	GGWCC	1 cut(s)	1012
Eco57I	CTGAAG	4 cut(s)	404, 513, 709, 713
EcoT14I	CCWWGG	2 cut(s)	131, 949
EcoT22I	ATGCAT	2 cut(s)	145, 832
ErhI	CCWWGG	2 cut(s)	131, 949
FaeI	CATG	4 cut(s)	443, 459, 623, 1097
FaqI	GGGAC	2 cut(s)	596, 774
FatI	CATG	4 cut(s)	439, 455, 619, 1093
FbaI	TGATCA	1 cut(s)	199
FblI	GTMKAC	1 cut(s)	698
Fnu4HI	GCNGC	1 cut(s)	743
FokI	GGATG	5 cut(s)	131, 305, 430, 1004, 1061
Fsp4HI	GCNGC	1 cut(s)	743
FspBI	CTAG	3 cut(s)	671, 746, 1171
GlaI	GCGC	3 cut(s)	183, 710, 712
GluI	GCNGC	1 cut(s)	743
HaeIII	GGCC	2 cut(s)	948, 1087
HgaI	GACGC	1 cut(s)	593
HhaI	GCGC	3 cut(s)	184, 711, 713
Hin1II	CATG	4 cut(s)	443, 459, 623, 1097
Hin6I	GCGC	3 cut(s)	182, 709, 711
HinP1I	GCGC	3 cut(s)	182, 709, 711
HindIII	AAGCTT	1 cut(s)	541
HinfI	GANTC	9 cut(s)	84, 260, 303, 370, 423, 762, 878, 954, 983
HphI	GGTGA	2 cut(s)	854, 865
Hpy166II	GTNNAC	1 cut(s)	699
Hpy188I	TCNGA	3 cut(s)	525, 927, 1012
Hpy188III	TCNNGA	9 cut(s)	11, 88, 284, 338, 800, 834, 872, 905, 1134
Hpy8I	GTNNAC	1 cut(s)	699
HpyAV	CCTTC	3 cut(s)	85, 89, 811
HpyCH4III	ACNGT	3 cut(s)	211, 313, 483
HpyF10VI	GCNNNNNNNGC	2 cut(s)	715, 899
HpyF3I	CTNAG	2 cut(s)	250, 632
Hsp92II	CATG	4 cut(s)	443, 459, 623, 1097
HspAI	GCGC	3 cut(s)	182, 709, 711
Ksp22I	TGATCA	1 cut(s)	199
Kzo9I	GATC	4 cut(s)	13, 199, 243, 855
LweI	GCATC	6 cut(s)	283, 613, 817, 839, 877, 1039
MaeI	CTAG	3 cut(s)	671, 746, 1171
MalI	GATC	4 cut(s)	15, 201, 245, 857
MboI	GATC	4 cut(s)	13, 199, 243, 855
MboII	GAAGA	7 cut(s)	416, 419, 478, 545, 662, 949, 1007
MflI	RGATCY	1 cut(s)	243
MluCI	AATT	1 cut(s)	1117
MlyI	GAGTC	6 cut(s)	269, 297, 417, 756, 948, 992
Mph1103I	ATGCAT	2 cut(s)	145, 832
MseI	TTAA	5 cut(s)	476, 657, 774, 1044, 1146
MslI	CAYNNNNRTG	1 cut(s)	314
MvnI	CGCG	2 cut(s)	709, 711
MwoI	GCNNNNNNNGC	2 cut(s)	715, 899
NdeII	GATC	4 cut(s)	13, 199, 243, 855
NlaIII	CATG	4 cut(s)	443, 459, 623, 1097
NlaIV	GGNNCC	3 cut(s)	152, 318, 471
NsiI	ATGCAT	2 cut(s)	145, 832
NspI	RCATGY	1 cut(s)	1097
NspV	TTCGAA	1 cut(s)	37
OliI	CACNNNNGTG	1 cut(s)	314
PaqCI	CACCTGC	1 cut(s)	884
PauI	GCGCGC	1 cut(s)	709
PcsI	WCGNNNNNNNCGW	1 cut(s)	591
PfeI	GAWTC	3 cut(s)	84, 370, 878
PkrI	GCNGC	1 cut(s)	744
PleI	GAGTC	6 cut(s)	268, 297, 417, 756, 948, 991
PpsI	GAGTC	6 cut(s)	268, 297, 417, 756, 948, 991
PspN4I	GGNNCC	3 cut(s)	152, 318, 471
PspPI	GGNCC	1 cut(s)	1012
PstI	CTGCAG	1 cut(s)	557
PstNI	CAGNNNCTG	1 cut(s)	719
PsuI	RGATCY	1 cut(s)	243
PteI	GCGCGC	1 cut(s)	709
RsaI	GTAC	5 cut(s)	137, 213, 397, 570, 977
RsaNI	GTAC	5 cut(s)	136, 212, 396, 569, 976
RseI	CAYNNNNRTG	1 cut(s)	314
Rsr2I	CGGWCCG	1 cut(s)	1012
RsrII	CGGWCCG	1 cut(s)	1012
SaqAI	TTAA	5 cut(s)	476, 657, 774, 1044, 1146
SatI	GCNGC	1 cut(s)	743
Sau3AI	GATC	4 cut(s)	13, 199, 243, 855
Sau96I	GGNCC	1 cut(s)	1012
SchI	GAGTC	6 cut(s)	269, 297, 417, 756, 948, 992
SfaNI	GCATC	6 cut(s)	283, 613, 817, 839, 877, 1039
SfcI	CTRYAG	1 cut(s)	553
SfuI	TTCGAA	1 cut(s)	37
SinI	GGWCC	1 cut(s)	1012
SmiMI	CAYNNNNRTG	1 cut(s)	314
SmlI	CTYRAG	1 cut(s)	564
SmoI	CTYRAG	1 cut(s)	564
Sse9I	AATT	1 cut(s)	1117
SsiI	CCGC	2 cut(s)	742, 1077
SspMI	CTAG	3 cut(s)	671, 746, 1171
StyI	CCWWGG	2 cut(s)	131, 949
TaaI	ACNGT	3 cut(s)	211, 313, 483
TaqI	TCGA	4 cut(s)	12, 37, 594, 1162
TaqII	GACCGA	1 cut(s)	1029
TasI	AATT	1 cut(s)	1117
TatI	WGTACW	3 cut(s)	211, 568, 975
TauI	GCSGC	1 cut(s)	745
TfiI	GAWTC	3 cut(s)	84, 370, 878
Tru1I	TTAA	5 cut(s)	476, 657, 774, 1044, 1146
Tru9I	TTAA	5 cut(s)	476, 657, 774, 1044, 1146
TscAI	CASTG	5 cut(s)	245, 496, 696, 733, 964
TspDTI	ATGAA	3 cut(s)	546, 693, 1008
TspGWI	ACGGA	1 cut(s)	1112
TspRI	CASTG	5 cut(s)	245, 496, 696, 733, 964
VpaK11BI	GGWCC	1 cut(s)	1012
XapI	RAATTY	1 cut(s)	1117
XceI	RCATGY	1 cut(s)	1097
XmiI	GTMKAC	1 cut(s)	698
XspI	CTAG	3 cut(s)	671, 746, 1171
Zsp2I	ATGCAT	2 cut(s)	145, 832

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.