Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0019415

Physical Location & Seq

Genomic Coordinates Reverse (-)

66942709 .. 66943395

Gene Structure 687 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG420400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGCTCAATGATATTAAGGTTGTTAGAGACTTCAAATGTCCTGATGGCACAACAGAGAAGGAGATTGATGCATCAGGAGATGGTGATGTTCTGGTGATCTTGGATTTGCATCAAGACGAATCATTGTTTGAGGCCGGTGTTGCTCGTGAGATTGTTAGCAGAGTTCAGAAGTTGAGGAAGAAATCTGGCCTTGGACTCACTGACATTGTGGAGATGTACTTTGAGTCTTTGGATGAAGATAAATCAGTCTCGGACCGAGTTTTGCATTTGCAGGAACAATACATTAAGGATGCCATAGGTTCGCCAATGCTTCCTTGCGGTGTGAGGCCATCACATGCTGTTGTGCTTGGGGAGGAGAATTTCCGTGGAGTATCTGGAATGTCATTTAATATCAGGTTGGTTCGACCTATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004822 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006428 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0017101 GO:0019538 GO:0019752 GO:0019899 GO:0032991 GO:0034641 GO:0034645 GO:0034660 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0051020 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

Anticodon_1 tRNA-synt_1

Protein Analysis

137

Amino Acids

15.24

Weight (kDa)

4.93

Isoelectric Point (pI)

38.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF5915	PF19302	21 - 84	5e-12	Domain of unknown function (DUF5915)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0019415)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0060191
rosa_multiflora	Rmu_sc0003366.1_g000009
rosa_samantha	Rh5AG392300 Rh5BG404800 Rh5CG428900 Rh5DG420400 Rh5DG420500
rosa_wichuraiana	Rw5G036980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	318
AcsI	RAATTY	1 cut(s)	358
AfaI	GTAC	1 cut(s)	218
AgsI	TTSAA	1 cut(s)	34
Alw26I	GTCTC	2 cut(s)	21, 253
AoxI	GGCC	3 cut(s)	132, 187, 326
ApoI	RAATTY	1 cut(s)	358
AspS9I	GGNCC	1 cut(s)	253
AsuHPI	GGTGA	2 cut(s)	95, 106
AvaII	GGWCC	1 cut(s)	253
BauI	CACGAG	1 cut(s)	144
BccI	CCATC	3 cut(s)	38, 74, 337
BcoDI	GTCTC	2 cut(s)	21, 253
BfaI	CTAG	1 cut(s)	412
Bme18I	GGWCC	1 cut(s)	253
BmgT120I	GGNCC	1 cut(s)	253
BmsI	GCATC	4 cut(s)	58, 80, 118, 280
BsaBI	GATNNNNATC	1 cut(s)	108
BsaJI	CCNNGG	2 cut(s)	190, 364
Bse118I	RCCGGY	1 cut(s)	134
Bse8I	GATNNNNATC	1 cut(s)	108
BseDI	CCNNGG	2 cut(s)	190, 364
BseGI	GGATG	2 cut(s)	238, 295
BseJI	GATNNNNATC	1 cut(s)	108
BseRI	GAGGAG	1 cut(s)	368
BshFI	GGCC	3 cut(s)	134, 189, 328
BsiSI	CCGG	1 cut(s)	135
BsmAI	GTCTC	2 cut(s)	21, 253
BsnI	GGCC	3 cut(s)	134, 189, 328
Bsp143I	GATC	1 cut(s)	96
BspACI	CCGC	1 cut(s)	318
BspANI	GGCC	3 cut(s)	134, 189, 328
BsrFI	RCCGGY	1 cut(s)	134
BssAI	RCCGGY	1 cut(s)	134
BssECI	CCNNGG	2 cut(s)	190, 364
BssMI	GATC	1 cut(s)	96
BssSI	CACGAG	1 cut(s)	144
BssT1I	CCWWGG	1 cut(s)	190
Bst2BI	CACGAG	1 cut(s)	144
BstDSI	CCRYGG	1 cut(s)	364
BstF5I	GGATG	2 cut(s)	238, 295
BstKTI	GATC	1 cut(s)	99
BstMAI	GTCTC	2 cut(s)	21, 253
BstMBI	GATC	1 cut(s)	96
BstMWI	GCNNNNNNNGC	1 cut(s)	140
BstNSI	RCATGY	1 cut(s)	338
BsuRI	GGCC	3 cut(s)	134, 189, 328
BtgI	CCRYGG	1 cut(s)	364
BtsCI	GGATG	2 cut(s)	238, 295
BtsIMutI	CAGTG	1 cut(s)	198
Cfr10I	RCCGGY	1 cut(s)	134
Cfr13I	GGNCC	1 cut(s)	253
CpoI	CGGWCCG	1 cut(s)	253
Csp6I	GTAC	1 cut(s)	217
CspI	CGGWCCG	1 cut(s)	253
CviAII	CATG	1 cut(s)	335
CviJI	RGCY	3 cut(s)	134, 189, 328
CviKI_1	RGCY	3 cut(s)	134, 189, 328
CviQI	GTAC	1 cut(s)	217
DpnI	GATC	1 cut(s)	98
DpnII	GATC	1 cut(s)	96
Eco130I	CCWWGG	1 cut(s)	190
Eco47I	GGWCC	1 cut(s)	253
EcoT14I	CCWWGG	1 cut(s)	190
EcoT22I	ATGCAT	1 cut(s)	73
ErhI	CCWWGG	1 cut(s)	190
FaeI	CATG	1 cut(s)	338
FaiI	YATR	2 cut(s)	296, 336
FatI	CATG	1 cut(s)	334
FokI	GGATG	2 cut(s)	245, 302
FspBI	CTAG	1 cut(s)	412
HaeIII	GGCC	3 cut(s)	134, 189, 328
HapII	CCGG	1 cut(s)	135
Hin1II	CATG	1 cut(s)	338
HinfI	GANTC	3 cut(s)	119, 195, 224
HpaII	CCGG	1 cut(s)	135
HphI	GGTGA	2 cut(s)	95, 106
Hpy188I	TCNGA	2 cut(s)	168, 253
Hpy188III	TCNNGA	5 cut(s)	41, 75, 113, 146, 375
HpyAV	CCTTC	1 cut(s)	52
HpyCH4V	TGCA	4 cut(s)	71, 109, 265, 271
HpyF10VI	GCNNNNNNNGC	1 cut(s)	140
Hsp92II	CATG	1 cut(s)	338
Kzo9I	GATC	1 cut(s)	96
LpnPI	CCDG	8 cut(s)	54, 60, 77, 148, 171, 257, 360, 379
LweI	GCATC	4 cut(s)	58, 80, 118, 280
MaeI	CTAG	1 cut(s)	412
MalI	GATC	1 cut(s)	98
MboI	GATC	1 cut(s)	96
MboII	GAAGA	2 cut(s)	190, 248
MluCI	AATT	1 cut(s)	358
MlyI	GAGTC	2 cut(s)	189, 233
MnlI	CCTC	4 cut(s)	124, 168, 318, 346
Mph1103I	ATGCAT	1 cut(s)	73
MseI	TTAA	3 cut(s)	15, 285, 387
MspI	CCGG	1 cut(s)	135
MwoI	GCNNNNNNNGC	1 cut(s)	140
NdeII	GATC	1 cut(s)	96
NlaIII	CATG	1 cut(s)	338
NsiI	ATGCAT	1 cut(s)	73
NspI	RCATGY	1 cut(s)	338
PfeI	GAWTC	1 cut(s)	119
PleI	GAGTC	2 cut(s)	189, 232
PpsI	GAGTC	2 cut(s)	189, 232
PspPI	GGNCC	1 cut(s)	253
RsaI	GTAC	1 cut(s)	218
RsaNI	GTAC	1 cut(s)	217
Rsr2I	CGGWCCG	1 cut(s)	253
RsrII	CGGWCCG	1 cut(s)	253
SaqAI	TTAA	3 cut(s)	15, 285, 387
Sau3AI	GATC	1 cut(s)	96
Sau96I	GGNCC	1 cut(s)	253
SchI	GAGTC	2 cut(s)	189, 233
SetI	ASST	4 cut(s)	21, 301, 398, 409
SfaNI	GCATC	4 cut(s)	58, 80, 118, 280
SinI	GGWCC	1 cut(s)	253
Sse9I	AATT	1 cut(s)	358
SsiI	CCGC	1 cut(s)	318
SspMI	CTAG	1 cut(s)	412
StyI	CCWWGG	1 cut(s)	190
TaqI	TCGA	1 cut(s)	403
TaqII	GACCGA	1 cut(s)	270
TasI	AATT	1 cut(s)	358
TatI	WGTACW	1 cut(s)	216
TfiI	GAWTC	1 cut(s)	119
Tru1I	TTAA	3 cut(s)	15, 285, 387
Tru9I	TTAA	3 cut(s)	15, 285, 387
TscAI	CASTG	1 cut(s)	205
TspDTI	ATGAA	1 cut(s)	249
TspGWI	ACGGA	1 cut(s)	353
TspRI	CASTG	1 cut(s)	205
VpaK11BI	GGWCC	1 cut(s)	253
XapI	RAATTY	1 cut(s)	358
XceI	RCATGY	1 cut(s)	338
XspI	CTAG	1 cut(s)	412
Zsp2I	ATGCAT	1 cut(s)	73

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.