Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0019415

Physical Location & Seq

Genomic Coordinates Reverse (-)

68034688 .. 68035449

Gene Structure 762 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG392300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGAAGACAGTAATTGATCTTGCTCGTAATATTCGCGAACGTCACAACAAGCCTCTCAAAACACCCCTAAAAGAGATGGTCATTGTTCACCCTGATGCAGACTTTCTTGAAGACACTGATGCCAAGCTAAGAGAATATGTGCTTGAAGAACTTAATGTGCAATCTCTAGTCCTGTGCAATGATACACTGAAGTATACTTCATCGCGCGCAGAGCCTGACTTCAGTGTGTTAGGTAAGCGGCTAGGAAAATCTATGGGAGTTGTTTCCAAACAAGTCAAGGCCAGGTCACAGGAAAGTATCTTAGAATTCGAGAAAACCGGAGAGGTTACTCTTTGTGGTCATTCTCTAAAGCTCAATGATATTAAGGTTGTTAGAGACTTCAAATGTCCTGATGGCACAACAGAGAAGGAGATTGATGCATCAGGAGATGGTGATGTTCTGGTGATCTTGGATTTGCATCAAGATGAATCATTGTTTGAGGCAGGTGTTGCTCGTGAGATTGTTAGCAGAGTTCAGAAGTTGAGGAAGAAATCTGGCCTTGGACTCACTGACATTGTGGAGATGTACTTTGAGTCTTTGGATGAAGATAAATCAGTCTCGGACCGAGTTTTGCATTTGCAGGAACAATACATTAAGGATGCCATAGGTTCGCCAATGCTTCCTTGCGGTGTGAGGCCATCACATGCTGTTGTGCATGGGGAGGAGAATTTCCGTGGAGTATCTGGAATGTCATTTAATATCAGTTTGGTTCGACCTATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004822 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006428 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0017101 GO:0019538 GO:0019752 GO:0019899 GO:0032991 GO:0034641 GO:0034645 GO:0034660 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0051020 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

Anticodon_1 tRNA-synt_1

Protein Analysis

253

Amino Acids

28.31

Weight (kDa)

5.59

Isoelectric Point (pI)

35.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF5915	PF19302	45 - 199	1e-26	Domain of unknown function (DUF5915)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019415)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0060191
rosa_multiflora	Rmu_sc0003366.1_g000009
rosa_samantha	Rh5AG392300 Rh5BG404800 Rh5CG428900 Rh5DG420400 Rh5DG420500
rosa_wichuraiana	Rw5G036980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	473
Acc36I	ACCTGC	1 cut(s)	473
AccI	GTMKAC	1 cut(s)	194
AccII	CGCG	3 cut(s)	36, 205, 207
AciI	CCGC	2 cut(s)	238, 666
AcsI	RAATTY	2 cut(s)	305, 706
AcuI	CTGAAG	2 cut(s)	205, 209
AfaI	GTAC	1 cut(s)	566
AgsI	TTSAA	3 cut(s)	110, 146, 382
AjnI	CCWGG	1 cut(s)	281
AluBI	AGCT	2 cut(s)	127, 352
AluI	AGCT	2 cut(s)	127, 352
Alw26I	GTCTC	2 cut(s)	369, 601
AlwNI	CAGNNNCTG	1 cut(s)	215
AoxI	GGCC	3 cut(s)	279, 535, 674
ApoI	RAATTY	2 cut(s)	305, 706
AspLEI	GCGC	2 cut(s)	207, 209
AspS9I	GGNCC	1 cut(s)	601
AsuHPI	GGTGA	3 cut(s)	80, 443, 454
AvaII	GGWCC	1 cut(s)	601
BauI	CACGAG	1 cut(s)	492
BbsI	GAAGAC	2 cut(s)	11, 117
BccI	CCATC	4 cut(s)	70, 386, 422, 685
BciT130I	CCWGG	1 cut(s)	283
BcoDI	GTCTC	2 cut(s)	369, 601
BfaI	CTAG	3 cut(s)	167, 242, 760
BfuAI	ACCTGC	1 cut(s)	473
BisI	GCNGC	1 cut(s)	239
BlsI	GCNGC	1 cut(s)	240
Bme1390I	CCNGG	1 cut(s)	283
Bme18I	GGWCC	1 cut(s)	601
BmgT120I	GGNCC	1 cut(s)	601
BmrFI	CCNGG	1 cut(s)	283
BmsI	GCATC	6 cut(s)	85, 109, 406, 428, 466, 628
BpiI	GAAGAC	2 cut(s)	11, 117
BsaBI	GATNNNNATC	1 cut(s)	456
BsaJI	CCNNGG	2 cut(s)	538, 712
BsaWI	WCCGGW	1 cut(s)	317
Bse3DI	GCAATG	1 cut(s)	184
Bse8I	GATNNNNATC	1 cut(s)	456
BseBI	CCWGG	1 cut(s)	283
BseDI	CCNNGG	2 cut(s)	538, 712
BseGI	GGATG	2 cut(s)	586, 643
BseJI	GATNNNNATC	1 cut(s)	456
BseMI	GCAATG	1 cut(s)	184
BsePI	GCGCGC	1 cut(s)	205
BseRI	GAGGAG	1 cut(s)	716
Bsh1236I	CGCG	3 cut(s)	36, 205, 207
BshFI	GGCC	3 cut(s)	281, 537, 676
BsiSI	CCGG	1 cut(s)	318
BsmAI	GTCTC	2 cut(s)	369, 601
BsnI	GGCC	3 cut(s)	281, 537, 676
Bsp143I	GATC	2 cut(s)	16, 444
Bsp68I	TCGCGA	1 cut(s)	36
BspACI	CCGC	2 cut(s)	238, 666
BspANI	GGCC	3 cut(s)	281, 537, 676
BspFNI	CGCG	3 cut(s)	36, 205, 207
BspMI	ACCTGC	1 cut(s)	473
BsrDI	GCAATG	1 cut(s)	184
BssECI	CCNNGG	2 cut(s)	538, 712
BssHII	GCGCGC	1 cut(s)	205
BssMI	GATC	2 cut(s)	16, 444
BssNAI	GTATAC	1 cut(s)	195
BssSI	CACGAG	1 cut(s)	492
BssT1I	CCWWGG	1 cut(s)	538
Bst1107I	GTATAC	1 cut(s)	195
Bst2BI	CACGAG	1 cut(s)	492
Bst2UI	CCWGG	1 cut(s)	283
Bst4CI	ACNGT	1 cut(s)	10
BstAPI	GCANNNNNTGC	1 cut(s)	488
BstC8I	GCNNGC	1 cut(s)	207
BstDEI	CTNAG	2 cut(s)	128, 301
BstDSI	CCRYGG	1 cut(s)	712
BstF5I	GGATG	2 cut(s)	586, 643
BstFNI	CGCG	3 cut(s)	36, 205, 207
BstHHI	GCGC	2 cut(s)	207, 209
BstKTI	GATC	2 cut(s)	19, 447
BstMAI	GTCTC	2 cut(s)	369, 601
BstMBI	GATC	2 cut(s)	16, 444
BstMWI	GCNNNNNNNGC	2 cut(s)	211, 488
BstNI	CCWGG	1 cut(s)	283
BstNSI	RCATGY	1 cut(s)	686
BstSCI	CCNGG	1 cut(s)	281
BstUI	CGCG	3 cut(s)	36, 205, 207
BstV2I	GAAGAC	2 cut(s)	11, 117
BstZ17I	GTATAC	1 cut(s)	195
BsuRI	GGCC	3 cut(s)	281, 537, 676
BtgI	CCRYGG	1 cut(s)	712
BtgZI	GCGATG	1 cut(s)	186
BtsCI	GGATG	2 cut(s)	586, 643
BtsIMutI	CAGTG	4 cut(s)	114, 185, 229, 546
BtuMI	TCGCGA	1 cut(s)	36
BveI	ACCTGC	1 cut(s)	473
Cac8I	GCNNGC	1 cut(s)	207
CaiI	CAGNNNCTG	1 cut(s)	215
CfoI	GCGC	2 cut(s)	207, 209
Cfr13I	GGNCC	1 cut(s)	601
CpoI	CGGWCCG	1 cut(s)	601
Csp6I	GTAC	1 cut(s)	565
CspI	CGGWCCG	1 cut(s)	601
CviAII	CATG	2 cut(s)	683, 695
CviJI	RGCY	8 cut(s)	52, 127, 214, 241, 281, 352, 537, 676
CviKI_1	RGCY	8 cut(s)	52, 127, 214, 241, 281, 352, 537, 676
CviQI	GTAC	1 cut(s)	565
DdeI	CTNAG	2 cut(s)	128, 301
DpnI	GATC	2 cut(s)	18, 446
DpnII	GATC	2 cut(s)	16, 444
Eco130I	CCWWGG	1 cut(s)	538
Eco47I	GGWCC	1 cut(s)	601
Eco57I	CTGAAG	2 cut(s)	205, 209
EcoRI	GAATTC	1 cut(s)	305
EcoRII	CCWGG	1 cut(s)	281
EcoT14I	CCWWGG	1 cut(s)	538
EcoT22I	ATGCAT	1 cut(s)	421
ErhI	CCWWGG	1 cut(s)	538
FaeI	CATG	2 cut(s)	686, 698
FaiI	YATR	6 cut(s)	138, 195, 254, 644, 684, 696
FatI	CATG	2 cut(s)	682, 694
FblI	GTMKAC	1 cut(s)	194
Fnu4HI	GCNGC	1 cut(s)	239
FokI	GGATG	2 cut(s)	593, 650
Fsp4HI	GCNGC	1 cut(s)	239
FspBI	CTAG	3 cut(s)	167, 242, 760
GlaI	GCGC	2 cut(s)	206, 208
GluI	GCNGC	1 cut(s)	239
HaeIII	GGCC	3 cut(s)	281, 537, 676
HapII	CCGG	1 cut(s)	318
HhaI	GCGC	2 cut(s)	207, 209
Hin1II	CATG	2 cut(s)	686, 698
Hin6I	GCGC	2 cut(s)	205, 207
HinP1I	GCGC	2 cut(s)	205, 207
HinfI	GANTC	3 cut(s)	467, 543, 572
HpaII	CCGG	1 cut(s)	318
HphI	GGTGA	3 cut(s)	80, 443, 454
Hpy166II	GTNNAC	2 cut(s)	88, 195
Hpy188I	TCNGA	2 cut(s)	516, 601
Hpy188III	TCNNGA	8 cut(s)	35, 107, 310, 389, 423, 461, 494, 723
Hpy8I	GTNNAC	2 cut(s)	88, 195
HpyAV	CCTTC	1 cut(s)	400
HpyCH4III	ACNGT	1 cut(s)	10
HpyCH4IV	ACGT	1 cut(s)	40
HpyCH4V	TGCA	8 cut(s)	98, 160, 177, 419, 457, 613, 619, 694
HpyF10VI	GCNNNNNNNGC	2 cut(s)	211, 488
HpyF3I	CTNAG	2 cut(s)	128, 301
HpySE526I	ACGT	1 cut(s)	40
Hsp92II	CATG	2 cut(s)	686, 698
HspAI	GCGC	2 cut(s)	205, 207
Kzo9I	GATC	2 cut(s)	16, 444
LweI	GCATC	6 cut(s)	85, 109, 406, 428, 466, 628
MaeI	CTAG	3 cut(s)	167, 242, 760
MaeII	ACGT	1 cut(s)	40
MaeIII	GTNAC	3 cut(s)	41, 285, 325
MalI	GATC	2 cut(s)	18, 446
MboI	GATC	2 cut(s)	16, 444
MboII	GAAGA	5 cut(s)	16, 122, 158, 538, 596
MluCI	AATT	3 cut(s)	12, 305, 706
MlyI	GAGTC	2 cut(s)	537, 581
MnlI	CCTC	6 cut(s)	63, 316, 472, 516, 666, 694
Mph1103I	ATGCAT	1 cut(s)	421
MseI	TTAA	4 cut(s)	153, 363, 633, 735
MslI	CAYNNNNRTG	2 cut(s)	93, 462
MspI	CCGG	1 cut(s)	318
MspR9I	CCNGG	1 cut(s)	283
MvaI	CCWGG	1 cut(s)	283
MvnI	CGCG	3 cut(s)	36, 205, 207
MwoI	GCNNNNNNNGC	2 cut(s)	211, 488
NdeII	GATC	2 cut(s)	16, 444
NlaIII	CATG	2 cut(s)	686, 698
NmuCI	GTSAC	2 cut(s)	41, 285
NruI	TCGCGA	1 cut(s)	36
NsiI	ATGCAT	1 cut(s)	421
NspI	RCATGY	1 cut(s)	686
PaqCI	CACCTGC	1 cut(s)	473
PauI	GCGCGC	1 cut(s)	205
PfeI	GAWTC	1 cut(s)	467
PkrI	GCNGC	1 cut(s)	240
PleI	GAGTC	2 cut(s)	537, 580
PpsI	GAGTC	2 cut(s)	537, 580
Psp6I	CCWGG	1 cut(s)	281
PspGI	CCWGG	1 cut(s)	281
PspPI	GGNCC	1 cut(s)	601
PstNI	CAGNNNCTG	1 cut(s)	215
PteI	GCGCGC	1 cut(s)	205
RruI	TCGCGA	1 cut(s)	36
RsaI	GTAC	1 cut(s)	566
RsaNI	GTAC	1 cut(s)	565
RseI	CAYNNNNRTG	2 cut(s)	93, 462
Rsr2I	CGGWCCG	1 cut(s)	601
RsrII	CGGWCCG	1 cut(s)	601
SaqAI	TTAA	4 cut(s)	153, 363, 633, 735
SatI	GCNGC	1 cut(s)	239
Sau3AI	GATC	2 cut(s)	16, 444
Sau96I	GGNCC	1 cut(s)	601
SchI	GAGTC	2 cut(s)	537, 581
ScrFI	CCNGG	1 cut(s)	283
SfaNI	GCATC	6 cut(s)	85, 109, 406, 428, 466, 628
SinI	GGWCC	1 cut(s)	601
SmiMI	CAYNNNNRTG	2 cut(s)	93, 462
Sse9I	AATT	3 cut(s)	12, 305, 706
SsiI	CCGC	2 cut(s)	238, 666
SspI	AATATT	1 cut(s)	31
SspMI	CTAG	3 cut(s)	167, 242, 760
StyD4I	CCNGG	1 cut(s)	281
StyI	CCWWGG	1 cut(s)	538
TaaI	ACNGT	1 cut(s)	10
TaiI	ACGT	1 cut(s)	43
TaqI	TCGA	2 cut(s)	309, 751
TaqII	GACCGA	1 cut(s)	618
TasI	AATT	3 cut(s)	12, 305, 706
TatI	WGTACW	1 cut(s)	564
TauI	GCSGC	1 cut(s)	241
TfiI	GAWTC	1 cut(s)	467
Tru1I	TTAA	4 cut(s)	153, 363, 633, 735
Tru9I	TTAA	4 cut(s)	153, 363, 633, 735
TscAI	CASTG	4 cut(s)	121, 192, 229, 553
TseFI	GTSAC	2 cut(s)	41, 285
Tsp45I	GTSAC	2 cut(s)	41, 285
TspDTI	ATGAA	4 cut(s)	17, 189, 480, 597
TspGWI	ACGGA	1 cut(s)	701
TspRI	CASTG	4 cut(s)	121, 192, 229, 553
VpaK11BI	GGWCC	1 cut(s)	601
XapI	RAATTY	2 cut(s)	305, 706
XceI	RCATGY	1 cut(s)	686
XmiI	GTMKAC	1 cut(s)	194
XspI	CTAG	3 cut(s)	167, 242, 760
Zsp2I	ATGCAT	1 cut(s)	421

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.