RchiOBHm_Chr5g0071911

28S ribosomal protein S29

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0011212
Physical Location & Seq
Forward (+)
77753212 .. 77754708
1497 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ34690

Sequence Viewer

Length: 741 bp
ATGCTGCGAACGATTCTTCGAAGGGCAATAGCGACGGGCCCAAGGTCCGACGGCCCATGGAGGCTGACGGCGACGGCGAACTACTCGTCGTCCAAGGACACCAAGTCGACGGTGAAGAAGGCCAAGAAGAGTAACAAGTCTAAAGGCGAGGCCACTGCCGCCGCAGACGACGATGCCTACGCCGGCGCCGACGCCGATCTCTTCGACGATAAAGGTCGTGCTCGACGGCTTCAGGCCGACGAGAGCGATCCCTCGCTCGATGTGGGGCCCAATGGCCGACCTCTCTTCACTTCTACTCCGACGCTGGCTCAGCTCACCAGCATGGACAGCTGCTCCTACTTCAAGTTCAAGACGGAGGAGTTGAACAAGGTGTTGCCGGAGGGTTTGCCGTTGGGGATGGTGAGGGAGTTCGAGGAGGCAATGCAGAGCGCCGTGCTTGTTCGCCAGAGCTTCCTTGATCTCCGGGACAATTTCCGGCGGGTTGTGGACCCGCCGTTGGGATCAGCTAGGAGCAAAGGGTCAAAAGTTAAAAAACAGATTGTTTTGGATGGCCCTGTAAGCTGTGGAAAGAGTACGGCTCTTGCGATGCTAGTTCATTGGGCTCGTGAGGAAGGTTGGTTGGTTTTGTATGTTCCCAGAGGCAAGGACTGGACTCATGGAGGTTTTTTCTATAAAAACCCACAAACAGGTCTTTGGGATACACCTGTTCAAGCTGAAAATATTCTCAAGGCAAGATTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DAP3

Protein Analysis

246

Amino Acids

27.12

Weight (kDa)

9.45

Isoelectric Point (pI)

44.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DAP3 PF10236 172 - 243 1.3e-11 Mitochondrial ribosomal death-associated protein 3
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011212)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G16870
fragaria_vesca FvH4_3g39930 FvH4_3g39930
malus_domestica MD03G1058000.v1.1 MD11G1060300.v1.1
prunus_persica Prupe.6G046100_v2.0.a1
pyrus_communis pycom03g04630 pycom11g04980
rosa_chinensis RchiOBHm_Chr5g0071911 RchiOBHm_Chr5g0071921
rosa_laevigata RLG00000036262
rosa_multiflora Rmu_sc0002149.1_g000018
rosa_roxburghii Rroxscaffold_1G00009260
rosa_rugosa Rorug05G0415600 Rorug05G0415700
rosa_samantha Rh5AG471600 Rh5BG491500 Rh5CG515400 Rh5DG503000
rosa_wichuraiana Rw5G043830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 185
AccI GTMKAC 1 cut(s) 107
AciI CCGC 4 cut(s) 159, 162, 478, 491
AclWI GGATC 2 cut(s) 242, 508
AcoI YGGCCR 1 cut(s) 274
AcuI CTGAAG 1 cut(s) 215
AcyI GRCGYC 2 cut(s) 186, 192
AfaI GTAC 1 cut(s) 574
AfiI CCNNNNNNNGG 3 cut(s) 496, 497, 686
AgsI TTSAA 4 cut(s) 343, 349, 364, 710
AhdI GACNNNNNGTC 1 cut(s) 103
AluBI AGCT 6 cut(s) 313, 330, 450, 506, 561, 713
AluI AGCT 6 cut(s) 313, 330, 450, 506, 561, 713
Alw21I GWGCWC 1 cut(s) 223
AlwI GGATC 2 cut(s) 242, 508
AoxI GGCC 8 cut(s) 37, 52, 120, 150, 234, 266, 274, 550
ApaI GGGCCC 2 cut(s) 41, 270
ApeKI GCWGC 2 cut(s) 4, 330
ArsI GACNNNNNNTTYG 2 cut(s) 71, 103
Asp700I GAANNNNTTC 1 cut(s) 720
AspLEI GCGC 2 cut(s) 188, 431
AspS9I GGNCC 8 cut(s) 37, 38, 45, 53, 266, 267, 487, 551
AsuC2I CCSGG 1 cut(s) 464
AsuHPI GGTGA 3 cut(s) 124, 307, 412
AsuII TTCGAA 1 cut(s) 19
AvaII GGWCC 2 cut(s) 45, 487
BaeGI GKGCMC 2 cut(s) 41, 270
BaeI ACNNNNGTAYC 2 cut(s) 690, 723
BanI GGYRCC 1 cut(s) 185
BanII GRGCYC 3 cut(s) 41, 270, 604
BauI CACGAG 1 cut(s) 603
Bbv12I GWGCWC 1 cut(s) 223
BbvI GCAGC 1 cut(s) 317
BccI CCATC 2 cut(s) 391, 542
BceAI ACGGC 8 cut(s) 67, 84, 90, 242, 373, 416, 478, 591
BcgI CGANNNNNNTGC 2 cut(s) 137, 171
BciVI GTATCC 1 cut(s) 691
BcnI CCSGG 1 cut(s) 464
BfaI CTAG 2 cut(s) 507, 590
BfoI RGCGCY 2 cut(s) 189, 432
BfuI GTATCC 1 cut(s) 691
BisI GCNGC 4 cut(s) 5, 159, 162, 331
BlpI GCTNAGC 1 cut(s) 309
BlsI GCNGC 4 cut(s) 6, 160, 163, 332
Bme1390I CCNGG 1 cut(s) 464
Bme18I GGWCC 2 cut(s) 45, 487
BmeRI GACNNNNNGTC 1 cut(s) 103
BmgT120I GGNCC 8 cut(s) 37, 38, 45, 53, 266, 267, 487, 551
BmiI GGNNCC 5 cut(s) 39, 187, 267, 268, 489
BmrFI CCNGG 1 cut(s) 464
BmsI GCATC 2 cut(s) 163, 576
BplI GAGNNNNNCTC 2 cut(s) 562, 594
Bpu1102I GCTNAGC 1 cut(s) 309
Bpu14I TTCGAA 1 cut(s) 19
BpuEI CTTGAG 1 cut(s) 710
BpuMI CCSGG 1 cut(s) 464
BsaHI GRCGYC 2 cut(s) 186, 192
BsaJI CCNNGG 3 cut(s) 41, 56, 93
BsaXI ACNNNNNCTCC 4 cut(s) 280, 310, 317, 347
Bsc4I CCNNNNNNNGG 3 cut(s) 496, 497, 686
Bse118I RCCGGY 1 cut(s) 182
Bse1I ACTGG 1 cut(s) 653
Bse3DI GCAATG 1 cut(s) 426
BseDI CCNNGG 3 cut(s) 41, 56, 93
BseGI GGATG 2 cut(s) 402, 553
BseLI CCNNNNNNNGG 3 cut(s) 496, 497, 686
BseMI GCAATG 1 cut(s) 426
BseMII CTCAG 1 cut(s) 323
BseNI ACTGG 1 cut(s) 653
BseRI GAGGAG 2 cut(s) 371, 428
BseSI GKGCMC 2 cut(s) 41, 270
BseXI GCAGC 1 cut(s) 317
BshFI GGCC 8 cut(s) 39, 54, 122, 152, 236, 268, 276, 552
BshNI GGYRCC 1 cut(s) 185
BsiHKAI GWGCWC 1 cut(s) 223
BsiSI CCGG 4 cut(s) 183, 377, 463, 475
BslFI GGGAC 1 cut(s) 479
BslI CCNNNNNNNGG 3 cut(s) 496, 497, 686
BsmFI GGGAC 1 cut(s) 479
BsnI GGCC 8 cut(s) 39, 54, 122, 152, 236, 268, 276, 552
Bsp119I TTCGAA 1 cut(s) 19
Bsp120I GGGCCC 2 cut(s) 37, 266
Bsp1286I GDGCHC 4 cut(s) 41, 223, 270, 604
Bsp143I GATC 4 cut(s) 196, 247, 457, 500
Bsp1720I GCTNAGC 1 cut(s) 309
Bsp19I CCATGG 1 cut(s) 56
BspACI CCGC 4 cut(s) 159, 162, 478, 491
BspANI GGCC 8 cut(s) 39, 54, 122, 152, 236, 268, 276, 552
BspCNI CTCAG 1 cut(s) 322
BspLI GGNNCC 5 cut(s) 39, 187, 267, 268, 489
BspPI GGATC 2 cut(s) 242, 508
BspT104I TTCGAA 1 cut(s) 19
BspT107I GGYRCC 1 cut(s) 185
BsrDI GCAATG 1 cut(s) 426
BsrFI RCCGGY 1 cut(s) 182
BsrI ACTGG 1 cut(s) 653
BssAI RCCGGY 1 cut(s) 182
BssECI CCNNGG 3 cut(s) 41, 56, 93
BssMI GATC 4 cut(s) 196, 247, 457, 500
BssNI GRCGYC 2 cut(s) 186, 192
BssSI CACGAG 1 cut(s) 603
BssT1I CCWWGG 3 cut(s) 41, 56, 93
Bst2BI CACGAG 1 cut(s) 603
Bst4CI ACNGT 1 cut(s) 112
Bst6I CTCTTC 3 cut(s) 122, 206, 290
BstACI GRCGYC 2 cut(s) 186, 192
BstBI TTCGAA 1 cut(s) 19
BstC8I GCNNGC 2 cut(s) 184, 306
BstDEI CTNAG 1 cut(s) 309
BstDSI CCRYGG 1 cut(s) 56
BstF5I GGATG 2 cut(s) 402, 553
BstH2I RGCGCY 2 cut(s) 189, 432
BstHHI GCGC 2 cut(s) 188, 431
BstKTI GATC 4 cut(s) 199, 250, 460, 503
BstMBI GATC 4 cut(s) 196, 247, 457, 500
BstMWI GCNNNNNNNGC 4 cut(s) 158, 310, 327, 558
BstSCI CCNGG 1 cut(s) 462
BstSLI GKGCMC 2 cut(s) 41, 270
BstV1I GCAGC 1 cut(s) 317
BsuI GTATCC 1 cut(s) 691
BsuRI GGCC 8 cut(s) 39, 54, 122, 152, 236, 268, 276, 552
BtgI CCRYGG 1 cut(s) 56
BtgZI GCGATG 1 cut(s) 599
BtsCI GGATG 2 cut(s) 402, 553
BtsI GCAGTG 1 cut(s) 153
BtsIMutI CAGTG 1 cut(s) 153
Cac8I GCNNGC 2 cut(s) 184, 306
CfoI GCGC 2 cut(s) 188, 431
Cfr10I RCCGGY 1 cut(s) 182
Cfr13I GGNCC 8 cut(s) 37, 38, 45, 53, 266, 267, 487, 551
CseI GACGC 2 cut(s) 200, 310
Csp6I GTAC 1 cut(s) 573
CviAII CATG 3 cut(s) 57, 322, 656
CviQI GTAC 1 cut(s) 573
DdeI CTNAG 1 cut(s) 309
DinI GGCGCC 1 cut(s) 187
DpnI GATC 4 cut(s) 198, 249, 459, 502
DpnII GATC 4 cut(s) 196, 247, 457, 500
DriI GACNNNNNGTC 1 cut(s) 103
EaeI YGGCCR 1 cut(s) 274
Eam1104I CTCTTC 3 cut(s) 122, 206, 290
Eam1105I GACNNNNNGTC 1 cut(s) 103
EarI CTCTTC 3 cut(s) 122, 206, 290
Eco130I CCWWGG 3 cut(s) 41, 56, 93
Eco24I GRGCYC 3 cut(s) 41, 270, 604
Eco47I GGWCC 2 cut(s) 45, 487
Eco57I CTGAAG 1 cut(s) 215
EcoO109I RGGNCCY 1 cut(s) 266
EcoT14I CCWWGG 3 cut(s) 41, 56, 93
EcoT38I GRGCYC 3 cut(s) 41, 270, 604
EgeI GGCGCC 1 cut(s) 187
EheI GGCGCC 1 cut(s) 187
ErhI CCWWGG 3 cut(s) 41, 56, 93
FaeI CATG 3 cut(s) 60, 325, 659
FaiI YATR 5 cut(s) 58, 323, 630, 657, 672
FaqI GGGAC 1 cut(s) 479
FatI CATG 3 cut(s) 56, 321, 655
FauI CCCGC 2 cut(s) 471, 498
FblI GTMKAC 1 cut(s) 107
Fnu4HI GCNGC 4 cut(s) 5, 159, 162, 331
FokI GGATG 2 cut(s) 409, 560
FriOI GRGCYC 3 cut(s) 41, 270, 604
Fsp4HI GCNGC 4 cut(s) 5, 159, 162, 331
FspBI CTAG 2 cut(s) 507, 590
GlaI GCGC 2 cut(s) 187, 430
GluI GCNGC 4 cut(s) 5, 159, 162, 331
HaeII RGCGCY 2 cut(s) 189, 432
HaeIII GGCC 8 cut(s) 39, 54, 122, 152, 236, 268, 276, 552
HapII CCGG 4 cut(s) 183, 377, 463, 475
HgaI GACGC 2 cut(s) 200, 310
HhaI GCGC 2 cut(s) 188, 431
Hin1I GRCGYC 2 cut(s) 186, 192
Hin1II CATG 3 cut(s) 60, 325, 659
Hin6I GCGC 2 cut(s) 186, 429
HinP1I GCGC 2 cut(s) 186, 429
HincII GTYRAC 1 cut(s) 108
HindII GTYRAC 1 cut(s) 108
HinfI GANTC 2 cut(s) 13, 652
HpaII CCGG 4 cut(s) 183, 377, 463, 475
HphI GGTGA 3 cut(s) 124, 307, 412
Hpy166II GTNNAC 2 cut(s) 108, 487
Hpy188I TCNGA 2 cut(s) 49, 300
Hpy188III TCNNGA 2 cut(s) 349, 605
Hpy8I GTNNAC 2 cut(s) 108, 487
HpyAV CCTTC 3 cut(s) 15, 112, 605
HpyCH4III ACNGT 1 cut(s) 112
HpyCH4V TGCA 1 cut(s) 424
HpyF10VI GCNNNNNNNGC 4 cut(s) 158, 310, 327, 558
HpyF3I CTNAG 1 cut(s) 309
Hsp92I GRCGYC 2 cut(s) 186, 192
Hsp92II CATG 3 cut(s) 60, 325, 659
HspAI GCGC 2 cut(s) 186, 429
KasI GGCGCC 1 cut(s) 185
KroI GCCGGC 1 cut(s) 182
KroNI GCCGGC 1 cut(s) 184
Kzo9I GATC 4 cut(s) 196, 247, 457, 500
LmnI GCTCC 2 cut(s) 338, 510
Lsp1109I GCAGC 1 cut(s) 317
LweI GCATC 2 cut(s) 163, 576
MaeI CTAG 2 cut(s) 507, 590
MaeIII GTNAC 1 cut(s) 131
MalI GATC 4 cut(s) 198, 249, 459, 502
MboI GATC 4 cut(s) 196, 247, 457, 500
MboII GAAGA 5 cut(s) 8, 127, 139, 193, 277
MhlI GDGCHC 4 cut(s) 41, 223, 270, 604
MluCI AATT 1 cut(s) 469
Mly113I GGCGCC 1 cut(s) 186
MlyI GAGTC 1 cut(s) 646
MmeI TCCRAC 2 cut(s) 72, 323
MreI CGCCGGCG 1 cut(s) 182
MroNI GCCGGC 1 cut(s) 182
MroXI GAANNNNTTC 1 cut(s) 720
MseI TTAA 1 cut(s) 528
MslI CAYNNNNRTG 1 cut(s) 320
MspA1I CMGCKG 1 cut(s) 330
MspI CCGG 4 cut(s) 183, 377, 463, 475
MspR9I CCNGG 1 cut(s) 464
MwoI GCNNNNNNNGC 4 cut(s) 158, 310, 327, 558
NaeI GCCGGC 1 cut(s) 184
NarI GGCGCC 1 cut(s) 186
NciI CCSGG 1 cut(s) 464
NcoI CCATGG 1 cut(s) 56
NdeII GATC 4 cut(s) 196, 247, 457, 500
NgoMIV GCCGGC 1 cut(s) 182
NlaIII CATG 3 cut(s) 60, 325, 659
NlaIV GGNNCC 5 cut(s) 39, 187, 267, 268, 489
NspV TTCGAA 1 cut(s) 19
PcsI WCGNNNNNNNCGW 3 cut(s) 74, 186, 581
PdiI GCCGGC 1 cut(s) 184
PdmI GAANNNNTTC 1 cut(s) 720
PfeI GAWTC 1 cut(s) 13
PfoI TCCNGGA 1 cut(s) 462
PkrI GCNGC 4 cut(s) 6, 160, 163, 332
PleI GAGTC 1 cut(s) 646
PluTI GGCGCC 1 cut(s) 189
PpsI GAGTC 1 cut(s) 646
PspN4I GGNNCC 5 cut(s) 39, 187, 267, 268, 489
PspOMI GGGCCC 2 cut(s) 37, 266
PspPI GGNCC 8 cut(s) 37, 38, 45, 53, 266, 267, 487, 551
PvuII CAGCTG 1 cut(s) 330
RsaI GTAC 1 cut(s) 574
RsaNI GTAC 1 cut(s) 573
RseI CAYNNNNRTG 1 cut(s) 320
SalI GTCGAC 1 cut(s) 106
SaqAI TTAA 1 cut(s) 528
SatI GCNGC 4 cut(s) 5, 159, 162, 331
Sau3AI GATC 4 cut(s) 196, 247, 457, 500
Sau96I GGNCC 8 cut(s) 37, 38, 45, 53, 266, 267, 487, 551
SchI GAGTC 1 cut(s) 646
ScrFI CCNGG 1 cut(s) 464
SduI GDGCHC 4 cut(s) 41, 223, 270, 604
SfaNI GCATC 2 cut(s) 163, 576
SfoI GGCGCC 1 cut(s) 187
SfuI TTCGAA 1 cut(s) 19
SgrAI CRCCGGYG 1 cut(s) 182
SinI GGWCC 2 cut(s) 45, 487
SmiMI CAYNNNNRTG 1 cut(s) 320
SmlI CTYRAG 1 cut(s) 725
SmoI CTYRAG 1 cut(s) 725
Sse9I AATT 1 cut(s) 469
SsiI CCGC 4 cut(s) 159, 162, 478, 491
SspDI GGCGCC 1 cut(s) 185
SspI AATATT 1 cut(s) 721
SspMI CTAG 2 cut(s) 507, 590
StyD4I CCNGG 1 cut(s) 462
StyI CCWWGG 3 cut(s) 41, 56, 93
TaaI ACNGT 1 cut(s) 112
TaqI TCGA 6 cut(s) 19, 107, 204, 223, 258, 411
TasI AATT 1 cut(s) 469
TauI GCSGC 2 cut(s) 161, 164
TfiI GAWTC 1 cut(s) 13
Tru1I TTAA 1 cut(s) 528
Tru9I TTAA 1 cut(s) 528
TscAI CASTG 1 cut(s) 160
TseI GCWGC 2 cut(s) 4, 330
TspDTI ATGAA 1 cut(s) 584
TspGWI ACGGA 1 cut(s) 368
TspRI CASTG 1 cut(s) 160
VpaK11BI GGWCC 2 cut(s) 45, 487
XmiI GTMKAC 1 cut(s) 107
XmnI GAANNNNTTC 1 cut(s) 720
XspI CTAG 2 cut(s) 507, 590
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.