RchiOBHm_Chr5g0071921

28S ribosomal protein S29

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0011212
Physical Location & Seq
Forward (+)
77754710 .. 77756576
1867 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ34691

Sequence Viewer

Length: 543 bp
ATGAAAGATGGAATTGATTCCATGGCAATGCCTGAAGGTTCAACACTGTATGACCTGGTTGATACAGGAATCAAGCACACTCATGCAGCTGTTGGAGTGGTAGTTCGTTTGAGGAAGGAGTTATCTCTAGTGAAAGATATCCCTGTGCTGATTGCGATTGATCAGTACAATAACTGGTTTACGTTCAGTGAGTATGAAGAGGCAGTAACTGTTCGTTCTACTCGACCAATACATGCCAAAGAACTTGCTACGGTGAAGGCTTTTAGATCTATGATCCATGATGACATGATGGTGGGTGCCTTTTCTCATTCAACAGCAGTAGGAAAACTTCGTCAAGACTTGCCAGATGTGCCCTCTGATGCTCGCATTAACTTTCCTCGTTACACTTTAGATGAAGCAGCAGCTGTTTGCCATTACTACCTTAGACAGAGGCTTATACGCCGGGAAGCTTTCTCAGAGGAAAATTGCAAGAGAATATACTACTTGTCCAATGGAAACGGAGCAGAAATGAGATGGCTAGCTACTTTCATGCGGGAGCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DAP3

Protein Analysis

180

Amino Acids

20.62

Weight (kDa)

6.59

Isoelectric Point (pI)

42.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DAP3 PF10236 9 - 94 1.7e-13 Mitochondrial ribosomal death-associated protein 3
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011212)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G16870
fragaria_vesca FvH4_3g39930 FvH4_3g39930
malus_domestica MD03G1058000.v1.1 MD11G1060300.v1.1
prunus_persica Prupe.6G046100_v2.0.a1
pyrus_communis pycom03g04630 pycom11g04980
rosa_chinensis RchiOBHm_Chr5g0071911 RchiOBHm_Chr5g0071921
rosa_laevigata RLG00000036262
rosa_multiflora Rmu_sc0002149.1_g000018
rosa_roxburghii Rroxscaffold_1G00009260
rosa_rugosa Rorug05G0415600 Rorug05G0415700
rosa_samantha Rh5AG471600 Rh5BG491500 Rh5CG515400 Rh5DG503000
rosa_wichuraiana Rw5G043830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 296
AciI CCGC 1 cut(s) 532
AclWI GGATC 1 cut(s) 268
AcuI CTGAAG 1 cut(s) 54
AfaI GTAC 1 cut(s) 167
AgsI TTSAA 2 cut(s) 42, 312
AjnI CCWGG 1 cut(s) 54
AloI GAACNNNNNNTCC 2 cut(s) 87, 119
AluBI AGCT 4 cut(s) 89, 404, 449, 521
AluI AGCT 4 cut(s) 89, 404, 449, 521
AlwI GGATC 1 cut(s) 268
AlwNI CAGNNNCTG 2 cut(s) 209, 404
ApeKI GCWGC 3 cut(s) 86, 398, 401
Asp700I GAANNNNTTC 1 cut(s) 16
AsuC2I CCSGG 1 cut(s) 443
AsuHPI GGTGA 1 cut(s) 265
AsuNHI GCTAGC 1 cut(s) 517
BaeGI GKGCMC 1 cut(s) 354
BanI GGYRCC 1 cut(s) 296
BarI GAAGNNNNNNTAC 2 cut(s) 312, 344
BbvI GCAGC 3 cut(s) 98, 410, 413
BccI CCATC 3 cut(s) 2, 283, 507
BciT130I CCWGG 1 cut(s) 56
BclI TGATCA 1 cut(s) 160
BcnI CCSGG 1 cut(s) 443
BfaI CTAG 2 cut(s) 128, 518
BglII AGATCT 1 cut(s) 266
BisI GCNGC 3 cut(s) 87, 399, 402
BlsI GCNGC 3 cut(s) 88, 400, 403
Bme1390I CCNGG 2 cut(s) 56, 443
BmiI GGNNCC 1 cut(s) 298
BmrFI CCNGG 2 cut(s) 56, 443
BmsI GCATC 1 cut(s) 349
BmtI GCTAGC 1 cut(s) 521
BpuMI CCSGG 1 cut(s) 443
BsaJI CCNNGG 1 cut(s) 21
BsaXI ACNNNNNCTCC 2 cut(s) 87, 117
Bse1I ACTGG 1 cut(s) 179
Bse3DI GCAATG 1 cut(s) 33
BseBI CCWGG 1 cut(s) 56
BseDI CCNNGG 1 cut(s) 21
BseMI GCAATG 1 cut(s) 33
BseMII CTCAG 1 cut(s) 468
BseNI ACTGG 1 cut(s) 179
BseSI GKGCMC 1 cut(s) 354
BseXI GCAGC 3 cut(s) 98, 410, 413
BshNI GGYRCC 1 cut(s) 296
BsiSI CCGG 1 cut(s) 442
Bsp1286I GDGCHC 1 cut(s) 354
Bsp143I GATC 3 cut(s) 160, 266, 273
Bsp19I CCATGG 1 cut(s) 21
BspACI CCGC 1 cut(s) 532
BspCNI CTCAG 1 cut(s) 467
BspLI GGNNCC 1 cut(s) 298
BspOI GCTAGC 1 cut(s) 521
BspPI GGATC 1 cut(s) 268
BspT107I GGYRCC 1 cut(s) 296
BsrDI GCAATG 1 cut(s) 33
BsrI ACTGG 1 cut(s) 179
BssECI CCNNGG 1 cut(s) 21
BssMI GATC 3 cut(s) 160, 266, 273
BssT1I CCWWGG 1 cut(s) 21
Bst2UI CCWGG 1 cut(s) 56
Bst4CI ACNGT 3 cut(s) 48, 211, 253
Bst6I CTCTTC 1 cut(s) 192
BstC8I GCNNGC 2 cut(s) 364, 519
BstDEI CTNAG 2 cut(s) 422, 454
BstDSI CCRYGG 1 cut(s) 21
BstKTI GATC 3 cut(s) 163, 269, 276
BstMBI GATC 3 cut(s) 160, 266, 273
BstMWI GCNNNNNNNGC 1 cut(s) 349
BstNI CCWGG 1 cut(s) 56
BstNSI RCATGY 1 cut(s) 236
BstSCI CCNGG 2 cut(s) 54, 441
BstSLI GKGCMC 1 cut(s) 354
BstV1I GCAGC 3 cut(s) 98, 410, 413
BstX2I RGATCY 1 cut(s) 266
BstYI RGATCY 1 cut(s) 266
BtgI CCRYGG 1 cut(s) 21
BtsIMutI CAGTG 2 cut(s) 44, 193
Cac8I GCNNGC 2 cut(s) 364, 519
CaiI CAGNNNCTG 2 cut(s) 209, 404
CsiI ACCWGGT 1 cut(s) 54
Csp6I GTAC 1 cut(s) 166
CviAII CATG 6 cut(s) 22, 83, 233, 278, 286, 529
CviJI RGCY 7 cut(s) 89, 260, 404, 433, 449, 517, 521
CviKI_1 RGCY 7 cut(s) 89, 260, 404, 433, 449, 517, 521
CviQI GTAC 1 cut(s) 166
DdeI CTNAG 2 cut(s) 422, 454
DpnI GATC 3 cut(s) 162, 268, 275
DpnII GATC 3 cut(s) 160, 266, 273
Eam1104I CTCTTC 1 cut(s) 192
EarI CTCTTC 1 cut(s) 192
Eco130I CCWWGG 1 cut(s) 21
Eco32I GATATC 1 cut(s) 139
Eco57I CTGAAG 1 cut(s) 54
EcoRII CCWGG 1 cut(s) 54
EcoRV GATATC 1 cut(s) 139
EcoT14I CCWWGG 1 cut(s) 21
ErhI CCWWGG 1 cut(s) 21
FaeI CATG 6 cut(s) 25, 86, 236, 281, 289, 532
FatI CATG 6 cut(s) 21, 82, 232, 277, 285, 528
FauI CCCGC 1 cut(s) 525
FbaI TGATCA 1 cut(s) 160
Fnu4HI GCNGC 3 cut(s) 87, 399, 402
Fsp4HI GCNGC 3 cut(s) 87, 399, 402
FspBI CTAG 2 cut(s) 128, 518
GluI GCNGC 3 cut(s) 87, 399, 402
HapII CCGG 1 cut(s) 442
Hin1II CATG 6 cut(s) 25, 86, 236, 281, 289, 532
HindIII AAGCTT 1 cut(s) 447
HinfI GANTC 2 cut(s) 17, 69
HpaII CCGG 1 cut(s) 442
HphI GGTGA 1 cut(s) 265
Hpy166II GTNNAC 1 cut(s) 180
Hpy188I TCNGA 2 cut(s) 358, 457
Hpy188III TCNNGA 1 cut(s) 335
Hpy8I GTNNAC 1 cut(s) 180
HpyAV CCTTC 3 cut(s) 29, 109, 250
HpyCH4III ACNGT 3 cut(s) 48, 211, 253
HpyCH4IV ACGT 1 cut(s) 182
HpyCH4V TGCA 2 cut(s) 86, 468
HpyF10VI GCNNNNNNNGC 1 cut(s) 349
HpyF3I CTNAG 2 cut(s) 422, 454
HpySE526I ACGT 1 cut(s) 182
Hsp92II CATG 6 cut(s) 25, 86, 236, 281, 289, 532
Ksp22I TGATCA 1 cut(s) 160
Kzo9I GATC 3 cut(s) 160, 266, 273
LmnI GCTCC 2 cut(s) 500, 535
LpnPI CCDG 8 cut(s) 41, 45, 51, 68, 156, 160, 357, 455
Lsp1109I GCAGC 3 cut(s) 98, 410, 413
LweI GCATC 1 cut(s) 349
MabI ACCWGGT 1 cut(s) 54
MaeI CTAG 2 cut(s) 128, 518
MaeII ACGT 1 cut(s) 182
MaeIII GTNAC 2 cut(s) 205, 380
MalI GATC 3 cut(s) 162, 268, 275
MboI GATC 3 cut(s) 160, 266, 273
MboII GAAGA 1 cut(s) 209
MflI RGATCY 1 cut(s) 266
MhlI GDGCHC 1 cut(s) 354
MluCI AATT 2 cut(s) 12, 463
MmeI TCCRAC 1 cut(s) 73
MnlI CCTC 6 cut(s) 105, 193, 364, 387, 423, 451
MroXI GAANNNNTTC 1 cut(s) 16
MseI TTAA 1 cut(s) 369
MslI CAYNNNNRTG 3 cut(s) 26, 81, 290
MspA1I CMGCKG 2 cut(s) 89, 404
MspI CCGG 1 cut(s) 442
MspR9I CCNGG 2 cut(s) 56, 443
MvaI CCWGG 1 cut(s) 56
MwoI GCNNNNNNNGC 1 cut(s) 349
NciI CCSGG 1 cut(s) 443
NcoI CCATGG 1 cut(s) 21
NdeII GATC 3 cut(s) 160, 266, 273
NheI GCTAGC 1 cut(s) 517
NlaIII CATG 6 cut(s) 25, 86, 236, 281, 289, 532
NlaIV GGNNCC 1 cut(s) 298
NspI RCATGY 1 cut(s) 236
PcsI WCGNNNNNNNCGW 1 cut(s) 220
PdmI GAANNNNTTC 1 cut(s) 16
PfeI GAWTC 2 cut(s) 17, 69
PkrI GCNGC 3 cut(s) 88, 400, 403
Psp6I CCWGG 1 cut(s) 54
PspGI CCWGG 1 cut(s) 54
PspN4I GGNNCC 1 cut(s) 298
PstNI CAGNNNCTG 2 cut(s) 209, 404
PsuI RGATCY 1 cut(s) 266
PvuII CAGCTG 2 cut(s) 89, 404
RsaI GTAC 1 cut(s) 167
RsaNI GTAC 1 cut(s) 166
RseI CAYNNNNRTG 3 cut(s) 26, 81, 290
SaqAI TTAA 1 cut(s) 369
SatI GCNGC 3 cut(s) 87, 399, 402
Sau3AI GATC 3 cut(s) 160, 266, 273
ScrFI CCNGG 2 cut(s) 56, 443
SduI GDGCHC 1 cut(s) 354
SetI ASST 8 cut(s) 40, 57, 91, 185, 406, 423, 451, 523
SexAI ACCWGGT 1 cut(s) 54
SfaNI GCATC 1 cut(s) 349
SmiMI CAYNNNNRTG 3 cut(s) 26, 81, 290
Sse9I AATT 2 cut(s) 12, 463
SsiI CCGC 1 cut(s) 532
SspMI CTAG 2 cut(s) 128, 518
StyD4I CCNGG 2 cut(s) 54, 441
StyI CCWWGG 1 cut(s) 21
TaaI ACNGT 3 cut(s) 48, 211, 253
TaiI ACGT 1 cut(s) 185
TaqI TCGA 1 cut(s) 223
TasI AATT 2 cut(s) 12, 463
TatI WGTACW 1 cut(s) 165
TfiI GAWTC 2 cut(s) 17, 69
Tru1I TTAA 1 cut(s) 369
Tru9I TTAA 1 cut(s) 369
TscAI CASTG 2 cut(s) 51, 193
TseI GCWGC 3 cut(s) 86, 398, 401
TspDTI ATGAA 4 cut(s) 17, 210, 408, 517
TspGWI ACGGA 1 cut(s) 513
TspRI CASTG 2 cut(s) 51, 193
XceI RCATGY 1 cut(s) 236
XmnI GAANNNNTTC 1 cut(s) 16
XspI CTAG 2 cut(s) 128, 518
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.