RchiOBHm_Chr5g0072481

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0020545
Physical Location & Seq
Reverse (-)
78449325 .. 78452985
3661 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ34744

Sequence Viewer

Length: 597 bp
ATGCTTACCTGGGCAGCCCTTCCTAACCAAGAGTGGCGTGTCTCACTCTCGGTCCAACACGTGCCTTTTTTGTGTGTGTGTGTGTCTTCTGTTCTCTCTCCTCCTCTCCCTCTCCACTCCCTATCATCCAGCGCAACCTTTCTCGAATCTCTCTCACCTTTTCTTAACCCCTCGCTGCCTGGTCTGAAACCCGAATCCACCTCTCTCCCTCCTCTCTTACTCAAAGAACTCGAACTTGCATTCCCTCTGAAATTTGGACCTCTCCTCCCCGAAATCTCATCTTCCTTCATAGCATTATCCCCAAATTTGTTATCAAACCTTCTATATATCCTTCGATTTCTAGTAAATGTAGACGGATTGGAGCTTGGAAATCGTCTCCGATTCGACTTGCCAAAGCGGTCATTAGAGCTCGAACTCCCACGATTGATTCTCGCCGGAAAAGAGAGTTCCAACGAAAACGGGGGTACTGTAACCGGTATCCGACCACCGCCGTCCGATTCATCTCCCCGACCACCACCTCCGCGAGTCGGGTCAGTCCTCATAGAATTAAAGAGGAGGAGGAATGAGGTTTGGGGATGGTCAAGTTGGTTGGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

198

Amino Acids

21.79

Weight (kDa)

8.71

Isoelectric Point (pI)

64.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020545)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0072481
rosa_multiflora Rmu_sc0000762.1_g000014
rosa_roxburghii Rroxscaffold_3G00257690 Rroxscaffold_5G00347300 Rroxscaffold_6G00398670 Rroxscaffold_6G00409190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 351
AccII CGCG 1 cut(s) 523
AciI CCGC 3 cut(s) 397, 488, 521
AcsI RAATTY 2 cut(s) 251, 304
AcvI CACGTG 1 cut(s) 61
AfaI GTAC 1 cut(s) 466
AfiI CCNNNNNNNGG 1 cut(s) 527
AflIII ACRYGT 1 cut(s) 58
AgeI ACCGGT 1 cut(s) 473
AjnI CCWGG 2 cut(s) 8, 178
AloI GAACNNNNNNTCC 2 cut(s) 225, 257
AluBI AGCT 2 cut(s) 364, 409
AluI AGCT 2 cut(s) 364, 409
Alw21I GWGCWC 1 cut(s) 411
Alw26I GTCTC 2 cut(s) 46, 380
ApeKI GCWGC 2 cut(s) 14, 175
ApoI RAATTY 2 cut(s) 251, 304
AsiGI ACCGGT 1 cut(s) 473
AspLEI GCGC 1 cut(s) 134
AspS9I GGNCC 2 cut(s) 52, 257
AsuHPI GGTGA 1 cut(s) 147
AvaII GGWCC 2 cut(s) 52, 257
BanII GRGCYC 1 cut(s) 411
BbrPI CACGTG 1 cut(s) 61
BbsI GAAGAC 1 cut(s) 78
Bbv12I GWGCWC 1 cut(s) 411
BbvI GCAGC 2 cut(s) 26, 162
BccI CCATC 1 cut(s) 570
BceAI ACGGC 1 cut(s) 475
BciT130I CCWGG 2 cut(s) 10, 180
BciVI GTATCC 1 cut(s) 488
BcoDI GTCTC 2 cut(s) 46, 380
BfaI CTAG 1 cut(s) 341
BfuI GTATCC 1 cut(s) 488
BisI GCNGC 2 cut(s) 15, 176
BlsI GCNGC 2 cut(s) 16, 177
Bme1390I CCNGG 2 cut(s) 10, 180
Bme18I GGWCC 2 cut(s) 52, 257
BmgT120I GGNCC 2 cut(s) 52, 257
BmrFI CCNGG 2 cut(s) 10, 180
BpiI GAAGAC 1 cut(s) 78
BsaAI YACGTR 1 cut(s) 61
BsaJI CCNNGG 1 cut(s) 9
BsaWI WCCGGW 1 cut(s) 473
BsaXI ACNNNNNCTCC 2 cut(s) 249, 279
Bsc4I CCNNNNNNNGG 1 cut(s) 527
Bse118I RCCGGY 1 cut(s) 473
BseBI CCWGG 2 cut(s) 10, 180
BseDI CCNNGG 1 cut(s) 9
BseGI GGATG 2 cut(s) 125, 581
BseLI CCNNNNNNNGG 1 cut(s) 527
BseRI GAGGAG 6 cut(s) 90, 93, 201, 254, 568, 571
BseXI GCAGC 2 cut(s) 26, 162
Bsh1236I CGCG 1 cut(s) 523
BshTI ACCGGT 1 cut(s) 473
BsiHKAI GWGCWC 1 cut(s) 411
BsiSI CCGG 2 cut(s) 435, 474
BslI CCNNNNNNNGG 1 cut(s) 527
BsmAI GTCTC 2 cut(s) 46, 380
BsmBI CGTCTC 1 cut(s) 380
BsmI GAATGC 1 cut(s) 239
Bsp1286I GDGCHC 1 cut(s) 411
BspACI CCGC 3 cut(s) 397, 488, 521
BspFNI CGCG 1 cut(s) 523
BsrFI RCCGGY 1 cut(s) 473
BssAI RCCGGY 1 cut(s) 473
BssECI CCNNGG 1 cut(s) 9
Bst2UI CCWGG 2 cut(s) 10, 180
Bst4CI ACNGT 1 cut(s) 469
BstBAI YACGTR 1 cut(s) 61
BstF5I GGATG 2 cut(s) 125, 581
BstFNI CGCG 1 cut(s) 523
BstHHI GCGC 1 cut(s) 134
BstMAI GTCTC 2 cut(s) 46, 380
BstNI CCWGG 2 cut(s) 10, 180
BstSCI CCNGG 2 cut(s) 8, 178
BstUI CGCG 1 cut(s) 523
BstV1I GCAGC 2 cut(s) 26, 162
BstV2I GAAGAC 1 cut(s) 78
BsuI GTATCC 1 cut(s) 488
BtsCI GGATG 2 cut(s) 125, 581
CfoI GCGC 1 cut(s) 134
Cfr10I RCCGGY 1 cut(s) 473
Cfr13I GGNCC 2 cut(s) 52, 257
Csp6I GTAC 1 cut(s) 465
CspAI ACCGGT 1 cut(s) 473
CviJI RGCY 3 cut(s) 17, 364, 409
CviKI_1 RGCY 3 cut(s) 17, 364, 409
CviQI GTAC 1 cut(s) 465
Ecl136II GAGCTC 1 cut(s) 409
Eco24I GRGCYC 1 cut(s) 411
Eco47I GGWCC 2 cut(s) 52, 257
Eco53kI GAGCTC 1 cut(s) 409
Eco72I CACGTG 1 cut(s) 61
EcoICRI GAGCTC 1 cut(s) 409
EcoRII CCWGG 2 cut(s) 8, 178
EcoT38I GRGCYC 1 cut(s) 411
Esp3I CGTCTC 1 cut(s) 380
FaiI YATR 4 cut(s) 290, 325, 327, 542
FblI GTMKAC 1 cut(s) 351
Fnu4HI GCNGC 2 cut(s) 15, 176
FokI GGATG 2 cut(s) 112, 588
FriOI GRGCYC 1 cut(s) 411
Fsp4HI GCNGC 2 cut(s) 15, 176
FspBI CTAG 1 cut(s) 341
GlaI GCGC 1 cut(s) 133
GluI GCNGC 2 cut(s) 15, 176
HapII CCGG 2 cut(s) 435, 474
HhaI GCGC 1 cut(s) 134
Hin6I GCGC 1 cut(s) 132
HinP1I GCGC 1 cut(s) 132
HinfI GANTC 6 cut(s) 146, 194, 381, 427, 497, 525
HpaII CCGG 2 cut(s) 435, 474
HphI GGTGA 1 cut(s) 147
Hpy166II GTNNAC 1 cut(s) 352
Hpy188I TCNGA 5 cut(s) 186, 249, 380, 482, 496
Hpy188III TCNNGA 1 cut(s) 143
Hpy8I GTNNAC 1 cut(s) 352
HpyAV CCTTC 4 cut(s) 29, 295, 329, 341
HpyCH4III ACNGT 1 cut(s) 469
HpyCH4IV ACGT 1 cut(s) 60
HpyCH4V TGCA 1 cut(s) 239
HpySE526I ACGT 1 cut(s) 60
HspAI GCGC 1 cut(s) 132
LmnI GCTCC 1 cut(s) 361
LpnPI CCDG 6 cut(s) 22, 142, 165, 192, 448, 487
Lsp1109I GCAGC 2 cut(s) 26, 162
MaeI CTAG 1 cut(s) 341
MaeII ACGT 1 cut(s) 60
MaeIII GTNAC 1 cut(s) 469
MboII GAAGA 2 cut(s) 78, 273
MhlI GDGCHC 1 cut(s) 411
MluCI AATT 3 cut(s) 251, 304, 545
MlyI GAGTC 1 cut(s) 534
MmeI TCCRAC 3 cut(s) 79, 474, 505
MseI TTAA 2 cut(s) 165, 548
MspI CCGG 2 cut(s) 435, 474
MspR9I CCNGG 2 cut(s) 10, 180
Mva1269I GAATGC 1 cut(s) 239
MvaI CCWGG 2 cut(s) 10, 180
MvnI CGCG 1 cut(s) 523
PctI GAATGC 1 cut(s) 239
PfeI GAWTC 5 cut(s) 146, 194, 381, 427, 497
PinAI ACCGGT 1 cut(s) 473
PkrI GCNGC 2 cut(s) 16, 177
PleI GAGTC 1 cut(s) 533
PmaCI CACGTG 1 cut(s) 61
PmlI CACGTG 1 cut(s) 61
PpsI GAGTC 1 cut(s) 533
Ppu21I YACGTR 1 cut(s) 61
Psp124BI GAGCTC 1 cut(s) 411
Psp6I CCWGG 2 cut(s) 8, 178
PspCI CACGTG 1 cut(s) 61
PspGI CCWGG 2 cut(s) 8, 178
PspPI GGNCC 2 cut(s) 52, 257
RsaI GTAC 1 cut(s) 466
RsaNI GTAC 1 cut(s) 465
SacI GAGCTC 1 cut(s) 411
SaqAI TTAA 2 cut(s) 165, 548
SatI GCNGC 2 cut(s) 15, 176
Sau96I GGNCC 2 cut(s) 52, 257
SchI GAGTC 1 cut(s) 534
ScrFI CCNGG 2 cut(s) 10, 180
SduI GDGCHC 1 cut(s) 411
SinI GGWCC 2 cut(s) 52, 257
Sse9I AATT 3 cut(s) 251, 304, 545
SsiI CCGC 3 cut(s) 397, 488, 521
SspMI CTAG 1 cut(s) 341
SstI GAGCTC 1 cut(s) 411
StyD4I CCNGG 2 cut(s) 8, 178
TaaI ACNGT 1 cut(s) 469
TaiI ACGT 1 cut(s) 63
TaqI TCGA 5 cut(s) 144, 231, 334, 384, 411
TaqII GACCGA 1 cut(s) 40
TasI AATT 3 cut(s) 251, 304, 545
TfiI GAWTC 5 cut(s) 146, 194, 381, 427, 497
Tru1I TTAA 2 cut(s) 165, 548
Tru9I TTAA 2 cut(s) 165, 548
TseI GCWGC 2 cut(s) 14, 175
TspDTI ATGAA 2 cut(s) 277, 489
TspGWI ACGGA 1 cut(s) 369
VpaK11BI GGWCC 2 cut(s) 52, 257
XapI RAATTY 2 cut(s) 251, 304
XmiI GTMKAC 1 cut(s) 351
XspI CTAG 1 cut(s) 341
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.