Rroxscaffold_6G00398670

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0020545
Physical Location & Seq
Forward (+)
20555806 .. 20558410
2605 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00398670.1

Sequence Viewer

Length: 861 bp
ATGCATGGTTTGTGTGACTATGTCATTGAAGGAGATGGGACTGAAATTGACAAGTGCGTGCAGTACAAGTTATCTCTAAGTCCGAAAGTTTGCAATATATTTCCCAACCCCTCGCCACTGTCCTTAACCCCTCACCGCCTCGTCGAAACTAAATCAACCAACCTCTCTCCCTCCTCTCTTACTCAAAGAACTCAAACTCGAATTCCCTTTGTTGCTACACCACCAAAACTTGAACAAGAACAAAGTCTGCGAGAGCAATTTCACGGTCACCATCTCCAAAACCACCTTCTCACCACCACCACTTGCCGCAGTACCACCTCCTACTCCATTTGTAACTACACCCAATCCGACCACCCTTACCCTCAACCACAACCAATCCCGGACCCACTTCTCCAAGCCACGCCTCTCAACTCCTCATTTCTAATCCCCCGGATCCCTACCTTCACCACCACCAAAACTACCACAACCGCCATCGAGCTCGGTCAACAATTCCATTGCGATTATATATCAACAAATTCCAAGAACTACACCTGCATAATCAATCAAACCAACATGTCCAACATATGGGTATTTCCAAGTTCATCAAAAACCAAATTCCACCTCAAATTAATCCCAATTCTTTCTTTGAAACCCAAAATTACCAGAAAAAAATCAATCCGAAGCACACGAGATTGGGTTACCTATCCCAATCCTCGGCCCGACTTCAACAAAATCGCAACCACATGCAGCGTCACCACCATCACCGTCGGATTCCGTAGTATGGTTCATCTTCCATTTGGATGGAACCGGACCGAAGTAGTGGTCATTGAAGCTCTGCCTCGTGGCCAAACTACGATCACGAGATTTGAACTAGAGCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

286

Amino Acids

32.47

Weight (kDa)

9.28

Isoelectric Point (pI)

47.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020545)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0072481
rosa_multiflora Rmu_sc0000762.1_g000014
rosa_roxburghii Rroxscaffold_3G00257690 Rroxscaffold_5G00347300 Rroxscaffold_6G00398670 Rroxscaffold_6G00409190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 539
Acc36I ACCTGC 1 cut(s) 539
AccB7I CCANNNNNTGG 1 cut(s) 564
AciI CCGC 3 cut(s) 136, 307, 468
AclWI GGATC 2 cut(s) 427, 440
AcoI YGGCCR 1 cut(s) 823
AcsI RAATTY 3 cut(s) 201, 514, 593
AfaI GTAC 2 cut(s) 65, 313
AfiI CCNNNNNNNGG 3 cut(s) 564, 693, 760
AflIII ACRYGT 1 cut(s) 552
AgsI TTSAA 6 cut(s) 29, 233, 628, 706, 809, 848
AjuI GAANNNNNNNTTGG 2 cut(s) 270, 302
AluBI AGCT 2 cut(s) 478, 812
AluI AGCT 2 cut(s) 478, 812
Alw21I GWGCWC 1 cut(s) 480
AlwI GGATC 2 cut(s) 427, 440
AoxI GGCC 2 cut(s) 695, 823
ApeKI GCWGC 1 cut(s) 726
ApoI RAATTY 3 cut(s) 201, 514, 593
ArsI GACNNNNNNTTYG 2 cut(s) 786, 818
AseI ATTAAT 1 cut(s) 608
AspS9I GGNCC 3 cut(s) 382, 696, 789
AsuC2I CCSGG 2 cut(s) 380, 430
AsuHPI GGTGA 6 cut(s) 125, 260, 283, 436, 724, 733
AvaII GGWCC 2 cut(s) 382, 789
BalI TGGCCA 1 cut(s) 825
BamHI GGATCC 1 cut(s) 432
BanII GRGCYC 1 cut(s) 480
BauI CACGAG 3 cut(s) 666, 819, 838
Bbv12I GWGCWC 1 cut(s) 480
BbvI GCAGC 1 cut(s) 738
BccI CCATC 5 cut(s) 29, 279, 479, 746, 774
BcnI CCSGG 2 cut(s) 380, 430
BfaI CTAG 1 cut(s) 851
BfuAI ACCTGC 1 cut(s) 539
BisI GCNGC 2 cut(s) 307, 727
BlsI GCNGC 2 cut(s) 308, 728
Bme1390I CCNGG 2 cut(s) 380, 430
Bme18I GGWCC 2 cut(s) 382, 789
BmgT120I GGNCC 3 cut(s) 382, 696, 789
BmiI GGNNCC 3 cut(s) 384, 434, 785
BmrFI CCNGG 2 cut(s) 380, 430
BpuMI CCSGG 2 cut(s) 380, 430
BsaJI CCNNGG 2 cut(s) 428, 692
BsaWI WCCGGW 1 cut(s) 786
Bsc4I CCNNNNNNNGG 3 cut(s) 564, 693, 760
Bse3DI GCAATG 1 cut(s) 493
BseDI CCNNGG 2 cut(s) 428, 692
BseGI GGATG 1 cut(s) 785
BseLI CCNNNNNNNGG 3 cut(s) 564, 693, 760
BseMI GCAATG 1 cut(s) 493
BseRI GAGGAG 2 cut(s) 163, 403
BseXI GCAGC 1 cut(s) 738
BsgI GTGCAG 1 cut(s) 80
BshFI GGCC 2 cut(s) 697, 825
BsiHKAI GWGCWC 1 cut(s) 480
BsiSI CCGG 3 cut(s) 380, 430, 787
BslFI GGGAC 1 cut(s) 52
BslI CCNNNNNNNGG 3 cut(s) 564, 693, 760
BsmFI GGGAC 1 cut(s) 52
BsnI GGCC 2 cut(s) 697, 825
Bsp1286I GDGCHC 1 cut(s) 480
Bsp143I GATC 2 cut(s) 432, 834
BspACI CCGC 3 cut(s) 136, 307, 468
BspANI GGCC 2 cut(s) 697, 825
BspLI GGNNCC 3 cut(s) 384, 434, 785
BspMI ACCTGC 1 cut(s) 539
BspPI GGATC 2 cut(s) 427, 440
BsrDI GCAATG 1 cut(s) 493
BssECI CCNNGG 2 cut(s) 428, 692
BssMI GATC 2 cut(s) 432, 834
BssSI CACGAG 3 cut(s) 666, 819, 838
Bst2BI CACGAG 3 cut(s) 666, 819, 838
Bst4CI ACNGT 3 cut(s) 120, 266, 745
BstC8I GCNNGC 1 cut(s) 59
BstDEI CTNAG 1 cut(s) 77
BstEII GGTNACC 2 cut(s) 266, 676
BstF5I GGATG 1 cut(s) 785
BstKTI GATC 2 cut(s) 435, 837
BstMBI GATC 2 cut(s) 432, 834
BstNSI RCATGY 2 cut(s) 556, 726
BstPI GGTNACC 2 cut(s) 266, 676
BstSCI CCNGG 2 cut(s) 378, 428
BstV1I GCAGC 1 cut(s) 738
BstX2I RGATCY 1 cut(s) 432
BstXI CCANNNNNNTGG 1 cut(s) 780
BstYI RGATCY 1 cut(s) 432
BsuRI GGCC 2 cut(s) 697, 825
BtsCI GGATG 1 cut(s) 785
BtsIMutI CAGTG 1 cut(s) 116
BveI ACCTGC 1 cut(s) 539
Cac8I GCNNGC 1 cut(s) 59
Cfr13I GGNCC 3 cut(s) 382, 696, 789
CpoI CGGWCCG 1 cut(s) 789
CseI GACGC 1 cut(s) 718
Csp6I GTAC 2 cut(s) 64, 312
CspI CGGWCCG 1 cut(s) 789
CviAII CATG 3 cut(s) 5, 553, 723
CviJI RGCY 5 cut(s) 398, 478, 697, 812, 825
CviKI_1 RGCY 5 cut(s) 398, 478, 697, 812, 825
CviQI GTAC 2 cut(s) 64, 312
DdeI CTNAG 1 cut(s) 77
DpnI GATC 2 cut(s) 434, 836
DpnII GATC 2 cut(s) 432, 834
EaeI YGGCCR 1 cut(s) 823
Ecl136II GAGCTC 1 cut(s) 478
Eco24I GRGCYC 1 cut(s) 480
Eco47I GGWCC 2 cut(s) 382, 789
Eco53kI GAGCTC 1 cut(s) 478
Eco91I GGTNACC 2 cut(s) 266, 676
EcoICRI GAGCTC 1 cut(s) 478
EcoO65I GGTNACC 2 cut(s) 266, 676
EcoRI GAATTC 1 cut(s) 201
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 480
FaeI CATG 3 cut(s) 8, 556, 726
FaqI GGGAC 1 cut(s) 52
FatI CATG 3 cut(s) 4, 552, 722
FauNDI CATATG 1 cut(s) 563
Fnu4HI GCNGC 2 cut(s) 307, 727
FokI GGATG 1 cut(s) 792
FriOI GRGCYC 1 cut(s) 480
Fsp4HI GCNGC 2 cut(s) 307, 727
FspBI CTAG 1 cut(s) 851
GluI GCNGC 2 cut(s) 307, 727
HaeIII GGCC 2 cut(s) 697, 825
HapII CCGG 3 cut(s) 380, 430, 787
HgaI GACGC 1 cut(s) 718
Hin1II CATG 3 cut(s) 8, 556, 726
HincII GTYRAC 1 cut(s) 485
HindII GTYRAC 1 cut(s) 485
HinfI GANTC 1 cut(s) 750
HpaII CCGG 3 cut(s) 380, 430, 787
HphI GGTGA 6 cut(s) 125, 260, 283, 436, 724, 733
Hpy166II GTNNAC 1 cut(s) 485
Hpy188I TCNGA 4 cut(s) 84, 349, 659, 749
Hpy188III TCNNGA 1 cut(s) 838
Hpy8I GTNNAC 1 cut(s) 485
Hpy99I CGWCG 2 cut(s) 146, 749
HpyAV CCTTC 3 cut(s) 23, 296, 451
HpyCH4III ACNGT 3 cut(s) 120, 266, 745
HpyCH4V TGCA 5 cut(s) 4, 61, 93, 534, 726
HpyF3I CTNAG 1 cut(s) 77
Hsp92II CATG 3 cut(s) 8, 556, 726
Kzo9I GATC 2 cut(s) 432, 834
LpnPI CCDG 5 cut(s) 393, 443, 544, 655, 800
Lsp1109I GCAGC 1 cut(s) 738
MaeI CTAG 1 cut(s) 851
MaeIII GTNAC 5 cut(s) 14, 266, 332, 676, 730
MalI GATC 2 cut(s) 434, 836
MboI GATC 2 cut(s) 432, 834
MboII GAAGA 1 cut(s) 761
MflI RGATCY 1 cut(s) 432
MhlI GDGCHC 1 cut(s) 480
MlsI TGGCCA 1 cut(s) 825
MluCI AATT 9 cut(s) 45, 201, 257, 488, 514, 593, 605, 615, 636
MluNI TGGCCA 1 cut(s) 825
MmeI TCCRAC 3 cut(s) 372, 582, 727
Mox20I TGGCCA 1 cut(s) 825
Mph1103I ATGCAT 1 cut(s) 6
MscI TGGCCA 1 cut(s) 825
MseI TTAA 2 cut(s) 125, 608
MslI CAYNNNNRTG 1 cut(s) 778
Msp20I TGGCCA 1 cut(s) 825
MspI CCGG 3 cut(s) 380, 430, 787
MspR9I CCNGG 2 cut(s) 380, 430
NciI CCSGG 2 cut(s) 380, 430
NdeI CATATG 1 cut(s) 563
NdeII GATC 2 cut(s) 432, 834
NlaIII CATG 3 cut(s) 8, 556, 726
NlaIV GGNNCC 3 cut(s) 384, 434, 785
NmeAIII GCCGAG 1 cut(s) 673
NmuCI GTSAC 3 cut(s) 14, 266, 730
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 2 cut(s) 556, 726
PaqCI CACCTGC 1 cut(s) 539
PciI ACATGT 1 cut(s) 552
PfeI GAWTC 1 cut(s) 750
PflFI GACNNNGTC 1 cut(s) 20
PflMI CCANNNNNTGG 1 cut(s) 564
PfoI TCCNGGA 1 cut(s) 378
PkrI GCNGC 2 cut(s) 308, 728
PscI ACATGT 1 cut(s) 552
PshBI ATTAAT 1 cut(s) 608
Psp124BI GAGCTC 1 cut(s) 480
PspEI GGTNACC 2 cut(s) 266, 676
PspN4I GGNNCC 3 cut(s) 384, 434, 785
PspPI GGNCC 3 cut(s) 382, 696, 789
PsuI RGATCY 1 cut(s) 432
PsyI GACNNNGTC 1 cut(s) 20
RsaI GTAC 2 cut(s) 65, 313
RsaNI GTAC 2 cut(s) 64, 312
RseI CAYNNNNRTG 1 cut(s) 778
Rsr2I CGGWCCG 1 cut(s) 789
RsrII CGGWCCG 1 cut(s) 789
SacI GAGCTC 1 cut(s) 480
SaqAI TTAA 2 cut(s) 125, 608
SatI GCNGC 2 cut(s) 307, 727
Sau3AI GATC 2 cut(s) 432, 834
Sau96I GGNCC 3 cut(s) 382, 696, 789
ScrFI CCNGG 2 cut(s) 380, 430
SduI GDGCHC 1 cut(s) 480
SetI ASST 9 cut(s) 165, 288, 320, 443, 480, 533, 603, 683, 814
SinI GGWCC 2 cut(s) 382, 789
SmiMI CAYNNNNRTG 1 cut(s) 778
Sse9I AATT 9 cut(s) 45, 201, 257, 488, 514, 593, 605, 615, 636
SsiI CCGC 3 cut(s) 136, 307, 468
SspMI CTAG 1 cut(s) 851
SstI GAGCTC 1 cut(s) 480
StyD4I CCNGG 2 cut(s) 378, 428
TaaI ACNGT 3 cut(s) 120, 266, 745
TaqI TCGA 3 cut(s) 144, 199, 474
TaqII GACCGA 2 cut(s) 470, 806
TasI AATT 9 cut(s) 45, 201, 257, 488, 514, 593, 605, 615, 636
TatI WGTACW 1 cut(s) 63
TauI GCSGC 1 cut(s) 309
TfiI GAWTC 1 cut(s) 750
Tru1I TTAA 2 cut(s) 125, 608
Tru9I TTAA 2 cut(s) 125, 608
TscAI CASTG 1 cut(s) 123
TseFI GTSAC 3 cut(s) 14, 266, 730
TseI GCWGC 1 cut(s) 726
Tsp45I GTSAC 3 cut(s) 14, 266, 730
TspDTI ATGAA 2 cut(s) 570, 755
TspGWI ACGGA 1 cut(s) 743
TspRI CASTG 1 cut(s) 123
Tth111I GACNNNGTC 1 cut(s) 20
Van91I CCANNNNNTGG 1 cut(s) 564
VpaK11BI GGWCC 2 cut(s) 382, 789
VspI ATTAAT 1 cut(s) 608
XapI RAATTY 3 cut(s) 201, 514, 593
XceI RCATGY 2 cut(s) 556, 726
XspI CTAG 1 cut(s) 851
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.