Rroxscaffold_5G00347300

BAG family molecular chaperone regulator 8

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0020545
Physical Location & Seq
Reverse (-)
18635437 .. 18638493
3057 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00347300.1

Sequence Viewer

Length: 831 bp
ATGGGTCACGAGCACAATATATTTCGTGTCTTGGGTCACTCGCTCTCTCTCCAAGCCCAACCCCTCGCCGCTGTCCTCAACCCCTCGCCGCCTCGTCCGAAACCGAATCAACCAACCTCTCTCCCTCCTCTCTTACTCAAAGAACTCAAACTCGAATTCCCTCTCGTTGCTGCACCACCAAAACTTGAACAGGAACAAAGTCTGCGAGAGCAGTTTCACGGTCACCATCTCCAAAACCACCTTCTCACCACCACCACTTGCCGCTGCACCACCTCCTACTCCATTTGTCACTACACCCAATCCGACCACCCTTACCCTCAACCACAACCAATCCCATACCCACTTCTCGAAGCCACTACCTCTCAACTCCTCATTTCTAATCCCCCGGATCCCTACCTTCACCACCACCAAAACTACCTCAATCGCCACCGAGCTCAATCATCAATTCCATTGCGATTATATATCAACAAATTCCAAGAAATACACTGCATAATCAATCAAACCAACATATCCAACATATGGGTATTTCCAAGTTCATCAAAAACCAAATTCCACCTCAAATTAACCCCAATTCTTTCTTTGAAACCCAAAATTACCGAAAAAAATCAATCCGAAGCAACGAGATTGGGTTACTTATCCTCGACCTACTTCGACAAAATCGCAACCACATGCGGCGTCGCCACCATCACCGTCGGCCTCGTACTCGCCATCACCGTTGGATTCCGTAGTCCGGTTCATCTTCCATTTGGATGGAACCGGACCGAAGTCGTGGTCATTGAAGCTCGCCTCCGTGGCCAAACTTTGATCATGAGATTTGAACCGGAGCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006457 GO:0008150 GO:0009266 GO:0009506 GO:0009605 GO:0009607 GO:0009628 GO:0009987 GO:0016020 GO:0030054 GO:0043207 GO:0044464 GO:0050896 GO:0055044 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BAG

Protein Analysis

276

Amino Acids

31.38

Weight (kDa)

9.42

Isoelectric Point (pI)

57.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020545)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0072481
rosa_multiflora Rmu_sc0000762.1_g000014
rosa_roxburghii Rroxscaffold_3G00257690 Rroxscaffold_5G00347300 Rroxscaffold_6G00398670 Rroxscaffold_6G00409190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 519
AccBSI CCGCTC 1 cut(s) 826
AciI CCGC 5 cut(s) 69, 89, 262, 672, 826
AclWI GGATC 2 cut(s) 383, 396
AcoI YGGCCR 1 cut(s) 793
AcsI RAATTY 3 cut(s) 155, 470, 548
AcyI GRCGYC 1 cut(s) 675
AfaI GTAC 1 cut(s) 702
AfiI CCNNNNNNNGG 2 cut(s) 519, 730
AgsI TTSAA 4 cut(s) 188, 583, 779, 818
AjuI GAANNNNNNNTTGG 2 cut(s) 225, 257
AluBI AGCT 2 cut(s) 434, 782
AluI AGCT 2 cut(s) 434, 782
Alw21I GWGCWC 2 cut(s) 15, 436
AlwI GGATC 2 cut(s) 383, 396
AoxI GGCC 2 cut(s) 694, 793
ApeKI GCWGC 2 cut(s) 170, 264
ApoI RAATTY 3 cut(s) 155, 470, 548
ArsI GACNNNNNNTTYG 2 cut(s) 756, 788
AspS9I GGNCC 1 cut(s) 759
AsuC2I CCSGG 1 cut(s) 386
AsuHPI GGTGA 5 cut(s) 215, 238, 392, 679, 703
AvaII GGWCC 1 cut(s) 759
BalI TGGCCA 1 cut(s) 795
BamHI GGATCC 1 cut(s) 388
BanII GRGCYC 1 cut(s) 436
BauI CACGAG 1 cut(s) 8
Bbv12I GWGCWC 2 cut(s) 15, 436
BbvI GCAGC 2 cut(s) 157, 251
BccI CCATC 4 cut(s) 234, 692, 716, 744
BclI TGATCA 1 cut(s) 804
BcnI CCSGG 1 cut(s) 386
BglI GCCNNNNNGGC 1 cut(s) 792
BisI GCNGC 6 cut(s) 69, 89, 171, 262, 265, 673
BlsI GCNGC 6 cut(s) 70, 90, 172, 263, 266, 674
Bme1390I CCNGG 1 cut(s) 386
Bme18I GGWCC 1 cut(s) 759
BmgT120I GGNCC 1 cut(s) 759
BmiI GGNNCC 2 cut(s) 390, 755
BmrFI CCNGG 1 cut(s) 386
BoxI GACNNNNGTC 1 cut(s) 764
BpuMI CCSGG 1 cut(s) 386
BsaHI GRCGYC 1 cut(s) 675
BsaJI CCNNGG 2 cut(s) 384, 790
BsaWI WCCGGW 3 cut(s) 730, 756, 820
Bsc4I CCNNNNNNNGG 2 cut(s) 519, 730
Bse3DI GCAATG 1 cut(s) 449
BseDI CCNNGG 2 cut(s) 384, 790
BseGI GGATG 1 cut(s) 755
BseLI CCNNNNNNNGG 2 cut(s) 519, 730
BseMI GCAATG 1 cut(s) 449
BseRI GAGGAG 2 cut(s) 117, 359
BseXI GCAGC 2 cut(s) 157, 251
BsgI GTGCAG 2 cut(s) 156, 250
BshFI GGCC 2 cut(s) 696, 795
BsiHKAI GWGCWC 2 cut(s) 15, 436
BsiSI CCGG 4 cut(s) 386, 731, 757, 821
BslI CCNNNNNNNGG 2 cut(s) 519, 730
BsnI GGCC 2 cut(s) 696, 795
Bsp1286I GDGCHC 2 cut(s) 15, 436
Bsp143I GATC 2 cut(s) 388, 804
BspACI CCGC 5 cut(s) 69, 89, 262, 672, 826
BspANI GGCC 2 cut(s) 696, 795
BspHI TCATGA 1 cut(s) 807
BspLI GGNNCC 2 cut(s) 390, 755
BspPI GGATC 2 cut(s) 383, 396
BsrBI CCGCTC 1 cut(s) 826
BsrDI GCAATG 1 cut(s) 449
BssECI CCNNGG 2 cut(s) 384, 790
BssMI GATC 2 cut(s) 388, 804
BssNI GRCGYC 1 cut(s) 675
BssSI CACGAG 1 cut(s) 8
Bst2BI CACGAG 1 cut(s) 8
Bst4CI ACNGT 3 cut(s) 221, 691, 715
BstACI GRCGYC 1 cut(s) 675
BstC8I GCNNGC 1 cut(s) 784
BstDSI CCRYGG 1 cut(s) 790
BstEII GGTNACC 1 cut(s) 221
BstF5I GGATG 1 cut(s) 755
BstKTI GATC 2 cut(s) 391, 807
BstMBI GATC 2 cut(s) 388, 804
BstMWI GCNNNNNNNGC 1 cut(s) 792
BstNSI RCATGY 1 cut(s) 672
BstPAI GACNNNNGTC 1 cut(s) 764
BstPI GGTNACC 1 cut(s) 221
BstSCI CCNGG 1 cut(s) 384
BstV1I GCAGC 2 cut(s) 157, 251
BstX2I RGATCY 1 cut(s) 388
BstXI CCANNNNNNTGG 1 cut(s) 750
BstYI RGATCY 1 cut(s) 388
BsuRI GGCC 2 cut(s) 696, 795
BtgI CCRYGG 1 cut(s) 790
BtsCI GGATG 1 cut(s) 755
BtsI GCAGTG 1 cut(s) 484
BtsIMutI CAGTG 1 cut(s) 484
Cac8I GCNNGC 1 cut(s) 784
CciI TCATGA 1 cut(s) 807
Cfr13I GGNCC 1 cut(s) 759
CpoI CGGWCCG 1 cut(s) 759
CseI GACGC 1 cut(s) 664
Csp6I GTAC 1 cut(s) 701
CspI CGGWCCG 1 cut(s) 759
CviAII CATG 2 cut(s) 669, 808
CviJI RGCY 6 cut(s) 56, 353, 434, 696, 782, 795
CviKI_1 RGCY 6 cut(s) 56, 353, 434, 696, 782, 795
CviQI GTAC 1 cut(s) 701
DpnI GATC 2 cut(s) 390, 806
DpnII GATC 2 cut(s) 388, 804
EaeI YGGCCR 1 cut(s) 793
Ecl136II GAGCTC 1 cut(s) 434
Eco24I GRGCYC 1 cut(s) 436
Eco47I GGWCC 1 cut(s) 759
Eco53kI GAGCTC 1 cut(s) 434
Eco91I GGTNACC 1 cut(s) 221
EcoICRI GAGCTC 1 cut(s) 434
EcoO65I GGTNACC 1 cut(s) 221
EcoRI GAATTC 1 cut(s) 155
EcoT38I GRGCYC 1 cut(s) 436
FaeI CATG 2 cut(s) 672, 811
FatI CATG 2 cut(s) 668, 807
FauNDI CATATG 1 cut(s) 518
FbaI TGATCA 1 cut(s) 804
Fnu4HI GCNGC 6 cut(s) 69, 89, 171, 262, 265, 673
FokI GGATG 1 cut(s) 762
FriOI GRGCYC 1 cut(s) 436
Fsp4HI GCNGC 6 cut(s) 69, 89, 171, 262, 265, 673
GluI GCNGC 6 cut(s) 69, 89, 171, 262, 265, 673
HaeIII GGCC 2 cut(s) 696, 795
HapII CCGG 4 cut(s) 386, 731, 757, 821
HgaI GACGC 1 cut(s) 664
Hin1I GRCGYC 1 cut(s) 675
Hin1II CATG 2 cut(s) 672, 811
HinfI GANTC 2 cut(s) 106, 720
HpaII CCGG 4 cut(s) 386, 731, 757, 821
HphI GGTGA 5 cut(s) 215, 238, 392, 679, 703
Hpy188I TCNGA 3 cut(s) 99, 304, 613
Hpy188III TCNNGA 3 cut(s) 8, 347, 808
Hpy99I CGWCG 2 cut(s) 680, 695
HpyAV CCTTC 2 cut(s) 251, 407
HpyCH4III ACNGT 3 cut(s) 221, 691, 715
HpyCH4V TGCA 3 cut(s) 173, 267, 489
HpyF10VI GCNNNNNNNGC 1 cut(s) 792
Hsp92I GRCGYC 1 cut(s) 675
Hsp92II CATG 2 cut(s) 672, 811
Ksp22I TGATCA 1 cut(s) 804
Kzo9I GATC 2 cut(s) 388, 804
LmnI GCTCC 1 cut(s) 823
LpnPI CCDG 4 cut(s) 176, 399, 744, 770
Lsp1109I GCAGC 2 cut(s) 157, 251
MaeIII GTNAC 5 cut(s) 5, 35, 221, 287, 629
MalI GATC 2 cut(s) 390, 806
MbiI CCGCTC 1 cut(s) 826
MboI GATC 2 cut(s) 388, 804
MboII GAAGA 1 cut(s) 731
MflI RGATCY 1 cut(s) 388
MhlI GDGCHC 2 cut(s) 15, 436
MlsI TGGCCA 1 cut(s) 795
MluCI AATT 7 cut(s) 155, 444, 470, 548, 560, 570, 591
MluNI TGGCCA 1 cut(s) 795
MmeI TCCRAC 3 cut(s) 327, 537, 697
Mox20I TGGCCA 1 cut(s) 795
MscI TGGCCA 1 cut(s) 795
MseI TTAA 1 cut(s) 563
MslI CAYNNNNRTG 1 cut(s) 748
Msp20I TGGCCA 1 cut(s) 795
MspA1I CMGCKG 2 cut(s) 71, 264
MspI CCGG 4 cut(s) 386, 731, 757, 821
MspR9I CCNGG 1 cut(s) 386
MwoI GCNNNNNNNGC 1 cut(s) 792
NciI CCSGG 1 cut(s) 386
NdeI CATATG 1 cut(s) 518
NdeII GATC 2 cut(s) 388, 804
NlaIII CATG 2 cut(s) 672, 811
NlaIV GGNNCC 2 cut(s) 390, 755
NmuCI GTSAC 4 cut(s) 5, 35, 221, 287
NspI RCATGY 1 cut(s) 672
PagI TCATGA 1 cut(s) 807
PcsI WCGNNNNNNNCGW 1 cut(s) 711
PfeI GAWTC 2 cut(s) 106, 720
PflMI CCANNNNNTGG 1 cut(s) 519
PkrI GCNGC 6 cut(s) 70, 90, 172, 263, 266, 674
PshAI GACNNNNGTC 1 cut(s) 764
Psp124BI GAGCTC 1 cut(s) 436
PspEI GGTNACC 1 cut(s) 221
PspN4I GGNNCC 2 cut(s) 390, 755
PspPI GGNCC 1 cut(s) 759
PsuI RGATCY 1 cut(s) 388
RsaI GTAC 1 cut(s) 702
RsaNI GTAC 1 cut(s) 701
RseI CAYNNNNRTG 1 cut(s) 748
Rsr2I CGGWCCG 1 cut(s) 759
RsrII CGGWCCG 1 cut(s) 759
SacI GAGCTC 1 cut(s) 436
SaqAI TTAA 1 cut(s) 563
SatI GCNGC 6 cut(s) 69, 89, 171, 262, 265, 673
Sau3AI GATC 2 cut(s) 388, 804
Sau96I GGNCC 1 cut(s) 759
ScrFI CCNGG 1 cut(s) 386
SduI GDGCHC 2 cut(s) 15, 436
SinI GGWCC 1 cut(s) 759
SmiMI CAYNNNNRTG 1 cut(s) 748
Sse9I AATT 7 cut(s) 155, 444, 470, 548, 560, 570, 591
SsiI CCGC 5 cut(s) 69, 89, 262, 672, 826
SstI GAGCTC 1 cut(s) 436
StyD4I CCNGG 1 cut(s) 384
TaaI ACNGT 3 cut(s) 221, 691, 715
TaqI TCGA 4 cut(s) 153, 348, 641, 651
TaqII GACCGA 1 cut(s) 776
TasI AATT 7 cut(s) 155, 444, 470, 548, 560, 570, 591
TauI GCSGC 4 cut(s) 71, 91, 264, 675
TfiI GAWTC 2 cut(s) 106, 720
Tru1I TTAA 1 cut(s) 563
Tru9I TTAA 1 cut(s) 563
TscAI CASTG 1 cut(s) 491
TseFI GTSAC 4 cut(s) 5, 35, 221, 287
TseI GCWGC 2 cut(s) 170, 264
Tsp45I GTSAC 4 cut(s) 5, 35, 221, 287
TspDTI ATGAA 2 cut(s) 525, 725
TspGWI ACGGA 2 cut(s) 713, 779
TspRI CASTG 1 cut(s) 491
Van91I CCANNNNNTGG 1 cut(s) 519
VpaK11BI GGWCC 1 cut(s) 759
XapI RAATTY 3 cut(s) 155, 470, 548
XceI RCATGY 1 cut(s) 672
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.