RchiOBHm_Chr6g0244941

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Reverse (-)
888934 .. 890239
1306 bp
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UTR
Exon/CDS
Intron
PRQ21952

Sequence Viewer

Length: 153 bp
ATGGCATTGGATGAATATAATCAAGATCAGAATAGGGGCAGGAATTCGGGCGGGGCAACGGAGGCGGAGAATGACTACCACCCAGCACAGGAGGACAAGACGGAGGCGTTAGGATTGTTGAGGATGGATGCCAGGCTCTGGGTAACAGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

50

Amino Acids

5.67

Weight (kDa)

4.41

Isoelectric Point (pI)

40.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0019949)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 138
AciI CCGC 2 cut(s) 51, 65
AcsI RAATTY 1 cut(s) 43
AfiI CCNNNNNNNGG 2 cut(s) 88, 138
AjnI CCWGG 1 cut(s) 131
AlwNI CAGNNNCTG 1 cut(s) 138
ApoI RAATTY 1 cut(s) 43
BccI CCATC 1 cut(s) 118
BciT130I CCWGG 1 cut(s) 133
Bme1390I CCNGG 1 cut(s) 133
BmrFI CCNGG 1 cut(s) 133
BmsI GCATC 1 cut(s) 118
Bsc4I CCNNNNNNNGG 2 cut(s) 88, 138
BseBI CCWGG 1 cut(s) 133
BseGI GGATG 3 cut(s) 16, 129, 133
BseLI CCNNNNNNNGG 2 cut(s) 88, 138
BseYI CCCAGC 1 cut(s) 82
BslI CCNNNNNNNGG 2 cut(s) 88, 138
Bsp143I GATC 1 cut(s) 25
BspACI CCGC 2 cut(s) 51, 65
BssMI GATC 1 cut(s) 25
Bst2UI CCWGG 1 cut(s) 133
BstF5I GGATG 3 cut(s) 16, 129, 133
BstKTI GATC 1 cut(s) 28
BstMBI GATC 1 cut(s) 25
BstMWI GCNNNNNNNGC 1 cut(s) 62
BstNI CCWGG 1 cut(s) 133
BstSCI CCNGG 1 cut(s) 131
BtsCI GGATG 3 cut(s) 16, 129, 133
CaiI CAGNNNCTG 1 cut(s) 138
CviJI RGCY 1 cut(s) 136
CviKI_1 RGCY 1 cut(s) 136
DpnI GATC 1 cut(s) 27
DpnII GATC 1 cut(s) 25
EciI GGCGGA 1 cut(s) 80
EcoRI GAATTC 1 cut(s) 43
EcoRII CCWGG 1 cut(s) 131
FaiI YATR 1 cut(s) 18
FauI CCCGC 1 cut(s) 44
FokI GGATG 3 cut(s) 23, 136, 140
GsaI CCCAGC 1 cut(s) 86
Hpy188I TCNGA 1 cut(s) 30
Hpy188III TCNNGA 1 cut(s) 23
HpyF10VI GCNNNNNNNGC 1 cut(s) 62
Kzo9I GATC 1 cut(s) 25
LpnPI CCDG 6 cut(s) 25, 74, 96, 118, 124, 145
LweI GCATC 1 cut(s) 118
MaeIII GTNAC 1 cut(s) 142
MalI GATC 1 cut(s) 27
MboI GATC 1 cut(s) 25
MluCI AATT 1 cut(s) 43
MnlI CCTC 4 cut(s) 55, 85, 97, 114
MspR9I CCNGG 1 cut(s) 133
MvaI CCWGG 1 cut(s) 133
MwoI GCNNNNNNNGC 1 cut(s) 62
NdeII GATC 1 cut(s) 25
PflMI CCANNNNNTGG 1 cut(s) 138
Psp6I CCWGG 1 cut(s) 131
PspFI CCCAGC 1 cut(s) 82
PspGI CCWGG 1 cut(s) 131
PstNI CAGNNNCTG 1 cut(s) 138
Sau3AI GATC 1 cut(s) 25
ScrFI CCNGG 1 cut(s) 133
SfaNI GCATC 1 cut(s) 118
SgeI CNNG 9 cut(s) 35, 52, 60, 64, 95, 101, 109, 144, 145
Sse9I AATT 1 cut(s) 43
SsiI CCGC 2 cut(s) 51, 65
StyD4I CCNGG 1 cut(s) 131
TasI AATT 1 cut(s) 43
TspDTI ATGAA 1 cut(s) 27
TspGWI ACGGA 2 cut(s) 74, 116
Van91I CCANNNNNTGG 1 cut(s) 138
XapI RAATTY 1 cut(s) 43
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.