Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0019949

Physical Location & Seq

Genomic Coordinates Reverse (-)

40778224 .. 40778730

Gene Structure 507 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024958

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGGTGTTCGTCATCACCAATCTGATGACCGATATCTTGGTCAAGTACAAGGGCTCCTTGCCGGATTTTTTCCAGGAGTGGCACTCCGTGGTGGTGGAGGGGTTTGTGAAGCCTTCTACCTATGAAGTTCGCAAGGAAGTTCAGGGGAGTGTGTTTATGAAGAAACGAGTACTGATGGCATTGGATCAATATAATCAAGATCAGAATAGGGGCAGGAATTCGGGCGGGGCAACGGAAGCGGAGGATGACTACCACCCAGCACAGGAGGACGAGACGGATGCGTTAGGATTGTTGAGGATGGATGCCAGGCTTTGGGTAACAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016043 GO:0017003 GO:0017004 GO:0017006 GO:0018063 GO:0019538 GO:0019866 GO:0020037 GO:0022607 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0034622 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0065003 GO:0071704 GO:0071840 GO:0097159 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CcmE

Protein Analysis

109

Amino Acids

12.42

Weight (kDa)

4.83

Isoelectric Point (pI)

29.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CcmE	PF03100	2 - 39	6.6e-07	CcmE domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0019949)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0244941
rosa_laevigata	RLG00000008402 RLG00000024958 RLG00000029546 RLG00000035092
rosa_multiflora	Rmu_sc0002462.1_g000007
rosa_roxburghii	Rroxscaffold_3G00242750

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	312
AciI	CCGC	2 cut(s)	225, 239
AclWI	GGATC	1 cut(s)	192
AcsI	RAATTY	1 cut(s)	217
AdeI	CACNNNGTG	1 cut(s)	88
AfaI	GTAC	2 cut(s)	47, 171
AfiI	CCNNNNNNNGG	2 cut(s)	262, 312
AjnI	CCWGG	2 cut(s)	72, 305
Alw26I	GTCTC	1 cut(s)	266
AlwI	GGATC	1 cut(s)	192
ApoI	RAATTY	1 cut(s)	217
AsuHPI	GGTGA	1 cut(s)	7
BanII	GRGCYC	1 cut(s)	56
BccI	CCATC	2 cut(s)	169, 292
BcgI	CGANNNNNNTGC	2 cut(s)	260, 294
BciT130I	CCWGG	2 cut(s)	74, 307
BcoDI	GTCTC	1 cut(s)	266
BmcAI	AGTACT	1 cut(s)	171
Bme1390I	CCNGG	2 cut(s)	74, 307
BmiI	GGNNCC	1 cut(s)	55
BmrFI	CCNGG	2 cut(s)	74, 307
BmsI	GCATC	2 cut(s)	268, 292
BplI	GAGNNNNNCTC	2 cut(s)	68, 100
BsaJI	CCNNGG	1 cut(s)	87
BsaXI	ACNNNNNCTCC	2 cut(s)	38, 68
Bsc4I	CCNNNNNNNGG	2 cut(s)	262, 312
BseBI	CCWGG	2 cut(s)	74, 307
BseDI	CCNNGG	1 cut(s)	87
BseGI	GGATG	4 cut(s)	250, 283, 303, 307
BseLI	CCNNNNNNNGG	2 cut(s)	262, 312
BseYI	CCCAGC	1 cut(s)	256
BsiSI	CCGG	1 cut(s)	62
BslI	CCNNNNNNNGG	2 cut(s)	262, 312
BsmAI	GTCTC	1 cut(s)	266
BsmBI	CGTCTC	1 cut(s)	266
Bsp1286I	GDGCHC	1 cut(s)	56
Bsp143I	GATC	2 cut(s)	184, 199
BspACI	CCGC	2 cut(s)	225, 239
BspLI	GGNNCC	1 cut(s)	55
BspPI	GGATC	1 cut(s)	192
BssECI	CCNNGG	1 cut(s)	87
BssMI	GATC	2 cut(s)	184, 199
Bst2UI	CCWGG	2 cut(s)	74, 307
BstDSI	CCRYGG	1 cut(s)	87
BstF5I	GGATG	4 cut(s)	250, 283, 303, 307
BstKTI	GATC	2 cut(s)	187, 202
BstMAI	GTCTC	1 cut(s)	266
BstMBI	GATC	2 cut(s)	184, 199
BstMWI	GCNNNNNNNGC	1 cut(s)	236
BstNI	CCWGG	2 cut(s)	74, 307
BstSCI	CCNGG	2 cut(s)	72, 305
BtgI	CCRYGG	1 cut(s)	87
BtsCI	GGATG	4 cut(s)	250, 283, 303, 307
Csp6I	GTAC	2 cut(s)	46, 170
CviJI	RGCY	3 cut(s)	54, 112, 310
CviKI_1	RGCY	3 cut(s)	54, 112, 310
CviQI	GTAC	2 cut(s)	46, 170
DpnI	GATC	2 cut(s)	186, 201
DpnII	GATC	2 cut(s)	184, 199
DraIII	CACNNNGTG	1 cut(s)	88
Eco24I	GRGCYC	1 cut(s)	56
Eco32I	GATATC	1 cut(s)	34
EcoRI	GAATTC	1 cut(s)	217
EcoRII	CCWGG	2 cut(s)	72, 305
EcoRV	GATATC	1 cut(s)	34
EcoT38I	GRGCYC	1 cut(s)	56
Esp3I	CGTCTC	1 cut(s)	266
FaiI	YATR	3 cut(s)	123, 158, 192
FalI	AAGNNNNNCTT	2 cut(s)	41, 73
FauI	CCCGC	1 cut(s)	218
FokI	GGATG	4 cut(s)	257, 290, 310, 314
FriOI	GRGCYC	1 cut(s)	56
GsaI	CCCAGC	1 cut(s)	260
HapII	CCGG	1 cut(s)	62
HpaII	CCGG	1 cut(s)	62
HphI	GGTGA	1 cut(s)	7
Hpy188I	TCNGA	2 cut(s)	24, 204
Hpy188III	TCNNGA	1 cut(s)	197
HpyAV	CCTTC	1 cut(s)	123
HpyF10VI	GCNNNNNNNGC	1 cut(s)	236
Kzo9I	GATC	2 cut(s)	184, 199
LmnI	GCTCC	1 cut(s)	59
LpnPI	CCDG	9 cut(s)	59, 75, 86, 128, 199, 248, 270, 292, 319
LweI	GCATC	2 cut(s)	268, 292
MaeIII	GTNAC	1 cut(s)	316
MalI	GATC	2 cut(s)	186, 201
MboI	GATC	2 cut(s)	184, 199
MboII	GAAGA	1 cut(s)	172
MhlI	GDGCHC	1 cut(s)	56
MluCI	AATT	1 cut(s)	217
MnlI	CCTC	4 cut(s)	91, 235, 259, 288
MspI	CCGG	1 cut(s)	62
MspR9I	CCNGG	2 cut(s)	74, 307
MvaI	CCWGG	2 cut(s)	74, 307
MwoI	GCNNNNNNNGC	1 cut(s)	236
NdeII	GATC	2 cut(s)	184, 199
NlaIV	GGNNCC	1 cut(s)	55
PflMI	CCANNNNNTGG	1 cut(s)	312
PfoI	TCCNGGA	1 cut(s)	72
Psp6I	CCWGG	2 cut(s)	72, 305
PspFI	CCCAGC	1 cut(s)	256
PspGI	CCWGG	2 cut(s)	72, 305
PspN4I	GGNNCC	1 cut(s)	55
RsaI	GTAC	2 cut(s)	47, 171
RsaNI	GTAC	2 cut(s)	46, 170
Sau3AI	GATC	2 cut(s)	184, 199
ScaI	AGTACT	1 cut(s)	171
ScrFI	CCNGG	2 cut(s)	74, 307
SduI	GDGCHC	1 cut(s)	56
SetI	ASST	1 cut(s)	122
SfaNI	GCATC	2 cut(s)	268, 292
Sse9I	AATT	1 cut(s)	217
SsiI	CCGC	2 cut(s)	225, 239
StyD4I	CCNGG	2 cut(s)	72, 305
TaqII	GACCGA	1 cut(s)	44
TasI	AATT	1 cut(s)	217
TatI	WGTACW	2 cut(s)	45, 169
TspDTI	ATGAA	2 cut(s)	138, 173
TspGWI	ACGGA	3 cut(s)	76, 248, 290
Van91I	CCANNNNNTGG	1 cut(s)	312
XapI	RAATTY	1 cut(s)	217
ZrmI	AGTACT	1 cut(s)	171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.