RLG00000035092

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0019949
Physical Location & Seq
Forward (+)
60662778 .. 60663540
763 bp
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UTR
Exon/CDS
Intron
RLM00000035092

Sequence Viewer

Length: 468 bp
ATGCCCCTGCCTTCCTTCGACCAACTTGATTCGGCGAAGGATGCGATTTCAGCGTGGTCCGAGCTGTCTCGACGAGCTTGGGCGGAGGCGAAGGGTTTGACGACAGAGGATGGAGTTCGTCATCACCGATCTGATGATCGATATCTTGGTCAAGTACAAGGGCTCCTTGCCGGATTTTTTCCAGGAGTGGCACTCCGTGGTGGTGGAGGGGTTTGTGAAGCCTTCTACCGACGAAGTTCGCAAGGAAGTGTAAACGAAAAGCGACTCCAGGAAGGGCAGGTTCAGGGGAGTGTGTTTGTGAAGAAACGAGTGCTGATGGCATTGGATGAATATAATCAAGATCAGAATAGGGGCAGGAATTCGGGCGGGGCAACGGCGGCGGAGGATGAATACCACCTAGCACAGGAGGACGAGACGGAGGCGTTAGGATTGTTGAGGATGGATGCCAGGCTCTGGGTAACAGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

156

Amino Acids

17.15

Weight (kDa)

5.26

Isoelectric Point (pI)

57.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019949)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0244941
rosa_laevigata RLG00000008402 RLG00000024958 RLG00000029546 RLG00000035092
rosa_multiflora Rmu_sc0002462.1_g000007
rosa_roxburghii Rroxscaffold_3G00242750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 268
AccB7I CCANNNNNTGG 1 cut(s) 453
AciI CCGC 4 cut(s) 83, 366, 377, 380
AcsI RAATTY 1 cut(s) 358
AdeI CACNNNGTG 1 cut(s) 197
AfaI GTAC 1 cut(s) 156
AfiI CCNNNNNNNGG 2 cut(s) 403, 453
AjnI CCWGG 3 cut(s) 181, 267, 446
AluBI AGCT 2 cut(s) 64, 77
AluI AGCT 2 cut(s) 64, 77
Alw26I GTCTC 2 cut(s) 72, 407
AlwNI CAGNNNCTG 1 cut(s) 453
ApoI RAATTY 1 cut(s) 358
AspS9I GGNCC 1 cut(s) 57
AsuHPI GGTGA 1 cut(s) 116
AvaII GGWCC 1 cut(s) 57
BanII GRGCYC 1 cut(s) 165
BccI CCATC 3 cut(s) 104, 310, 433
BceAI ACGGC 1 cut(s) 390
BciT130I CCWGG 3 cut(s) 183, 269, 448
BcoDI GTCTC 2 cut(s) 72, 407
BfaI CTAG 1 cut(s) 398
BfuAI ACCTGC 1 cut(s) 268
BisI GCNGC 1 cut(s) 378
BlsI GCNGC 1 cut(s) 379
Bme1390I CCNGG 3 cut(s) 183, 269, 448
Bme18I GGWCC 1 cut(s) 57
BmgT120I GGNCC 1 cut(s) 57
BmiI GGNNCC 1 cut(s) 164
BmrFI CCNGG 3 cut(s) 183, 269, 448
BmsI GCATC 2 cut(s) 31, 433
BplI GAGNNNNNCTC 2 cut(s) 177, 209
BpmI CTGGAG 1 cut(s) 251
Bsa29I ATCGAT 1 cut(s) 139
BsaBI GATNNNNATC 1 cut(s) 141
BsaJI CCNNGG 1 cut(s) 196
BsaXI ACNNNNNCTCC 2 cut(s) 147, 177
Bsc4I CCNNNNNNNGG 2 cut(s) 403, 453
Bse8I GATNNNNATC 1 cut(s) 141
BseBI CCWGG 3 cut(s) 183, 269, 448
BseCI ATCGAT 1 cut(s) 139
BseDI CCNNGG 1 cut(s) 196
BseGI GGATG 6 cut(s) 46, 115, 331, 391, 444, 448
BseJI GATNNNNATC 1 cut(s) 141
BseLI CCNNNNNNNGG 2 cut(s) 403, 453
BshVI ATCGAT 1 cut(s) 139
BsiSI CCGG 1 cut(s) 171
BslI CCNNNNNNNGG 2 cut(s) 403, 453
BsmAI GTCTC 2 cut(s) 72, 407
BsmBI CGTCTC 1 cut(s) 407
Bsp1286I GDGCHC 1 cut(s) 165
Bsp143I GATC 3 cut(s) 128, 136, 340
BspACI CCGC 4 cut(s) 83, 366, 377, 380
BspDI ATCGAT 1 cut(s) 139
BspLI GGNNCC 1 cut(s) 164
BspMI ACCTGC 1 cut(s) 268
BssECI CCNNGG 1 cut(s) 196
BssMI GATC 3 cut(s) 128, 136, 340
Bst2UI CCWGG 3 cut(s) 183, 269, 448
BstDSI CCRYGG 1 cut(s) 196
BstENI CCTNNNNNAGG 1 cut(s) 401
BstF5I GGATG 6 cut(s) 46, 115, 331, 391, 444, 448
BstKTI GATC 3 cut(s) 131, 139, 343
BstMAI GTCTC 2 cut(s) 72, 407
BstMBI GATC 3 cut(s) 128, 136, 340
BstMWI GCNNNNNNNGC 3 cut(s) 41, 50, 377
BstNI CCWGG 3 cut(s) 183, 269, 448
BstSCI CCNGG 3 cut(s) 181, 267, 446
Bsu15I ATCGAT 1 cut(s) 139
BsuTUI ATCGAT 1 cut(s) 139
BtgI CCRYGG 1 cut(s) 196
BtsCI GGATG 6 cut(s) 46, 115, 331, 391, 444, 448
BveI ACCTGC 1 cut(s) 268
CaiI CAGNNNCTG 1 cut(s) 453
Cfr13I GGNCC 1 cut(s) 57
ClaI ATCGAT 1 cut(s) 139
Csp6I GTAC 1 cut(s) 155
CviJI RGCY 5 cut(s) 64, 77, 163, 221, 451
CviKI_1 RGCY 5 cut(s) 64, 77, 163, 221, 451
CviQI GTAC 1 cut(s) 155
DpnI GATC 3 cut(s) 130, 138, 342
DpnII GATC 3 cut(s) 128, 136, 340
DraIII CACNNNGTG 1 cut(s) 197
EciI GGCGGA 2 cut(s) 98, 395
Eco24I GRGCYC 1 cut(s) 165
Eco32I GATATC 1 cut(s) 143
Eco47I GGWCC 1 cut(s) 57
EcoNI CCTNNNNNAGG 1 cut(s) 401
EcoRI GAATTC 1 cut(s) 358
EcoRII CCWGG 3 cut(s) 181, 267, 446
EcoRV GATATC 1 cut(s) 143
EcoT38I GRGCYC 1 cut(s) 165
Esp3I CGTCTC 1 cut(s) 407
FaiI YATR 1 cut(s) 333
FalI AAGNNNNNCTT 2 cut(s) 150, 182
FauI CCCGC 1 cut(s) 359
Fnu4HI GCNGC 1 cut(s) 378
FokI GGATG 6 cut(s) 53, 122, 338, 398, 451, 455
FriOI GRGCYC 1 cut(s) 165
Fsp4HI GCNGC 1 cut(s) 378
FspBI CTAG 1 cut(s) 398
GluI GCNGC 1 cut(s) 378
GsuI CTGGAG 1 cut(s) 251
HapII CCGG 1 cut(s) 171
HinfI GANTC 2 cut(s) 29, 264
HpaII CCGG 1 cut(s) 171
HphI GGTGA 1 cut(s) 116
Hpy166II GTNNAC 1 cut(s) 253
Hpy188I TCNGA 3 cut(s) 61, 133, 345
Hpy188III TCNNGA 2 cut(s) 69, 338
Hpy8I GTNNAC 1 cut(s) 253
Hpy99I CGWCG 2 cut(s) 75, 234
HpyAV CCTTC 6 cut(s) 21, 25, 31, 85, 232, 266
HpyF10VI GCNNNNNNNGC 3 cut(s) 41, 50, 377
Kzo9I GATC 3 cut(s) 128, 136, 340
LmnI GCTCC 1 cut(s) 168
LweI GCATC 2 cut(s) 31, 433
MaeI CTAG 1 cut(s) 398
MaeIII GTNAC 1 cut(s) 457
MalI GATC 3 cut(s) 130, 138, 342
MboI GATC 3 cut(s) 128, 136, 340
MboII GAAGA 1 cut(s) 313
MhlI GDGCHC 1 cut(s) 165
MluCI AATT 1 cut(s) 358
MlyI GAGTC 1 cut(s) 258
MnlI CCTC 7 cut(s) 79, 100, 200, 376, 400, 412, 429
MspI CCGG 1 cut(s) 171
MspR9I CCNGG 3 cut(s) 183, 269, 448
MvaI CCWGG 3 cut(s) 183, 269, 448
MwoI GCNNNNNNNGC 3 cut(s) 41, 50, 377
NdeII GATC 3 cut(s) 128, 136, 340
NlaIV GGNNCC 1 cut(s) 164
PcsI WCGNNNNNNNCGW 1 cut(s) 124
PfeI GAWTC 1 cut(s) 29
PflMI CCANNNNNTGG 1 cut(s) 453
PfoI TCCNGGA 2 cut(s) 181, 267
PkrI GCNGC 1 cut(s) 379
PleI GAGTC 1 cut(s) 258
PpsI GAGTC 1 cut(s) 258
Psp6I CCWGG 3 cut(s) 181, 267, 446
PspGI CCWGG 3 cut(s) 181, 267, 446
PspN4I GGNNCC 1 cut(s) 164
PspPI GGNCC 1 cut(s) 57
PstNI CAGNNNCTG 1 cut(s) 453
RsaI GTAC 1 cut(s) 156
RsaNI GTAC 1 cut(s) 155
SatI GCNGC 1 cut(s) 378
Sau3AI GATC 3 cut(s) 128, 136, 340
Sau96I GGNCC 1 cut(s) 57
SchI GAGTC 1 cut(s) 258
ScrFI CCNGG 3 cut(s) 183, 269, 448
SduI GDGCHC 1 cut(s) 165
SetI ASST 4 cut(s) 66, 79, 282, 399
SfaNI GCATC 2 cut(s) 31, 433
SinI GGWCC 1 cut(s) 57
Sse9I AATT 1 cut(s) 358
SsiI CCGC 4 cut(s) 83, 366, 377, 380
SspMI CTAG 1 cut(s) 398
StyD4I CCNGG 3 cut(s) 181, 267, 446
TaqI TCGA 3 cut(s) 18, 70, 139
TasI AATT 1 cut(s) 358
TatI WGTACW 1 cut(s) 154
TauI GCSGC 1 cut(s) 380
TfiI GAWTC 1 cut(s) 29
TspDTI ATGAA 2 cut(s) 342, 402
TspGWI ACGGA 2 cut(s) 185, 431
Van91I CCANNNNNTGG 1 cut(s) 453
VpaK11BI GGWCC 1 cut(s) 57
XagI CCTNNNNNAGG 1 cut(s) 401
XapI RAATTY 1 cut(s) 358
XspI CTAG 1 cut(s) 398
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.