RLG00000029546

No description available

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Forward (+)
40198715 .. 40199228
514 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029546

Sequence Viewer

Length: 360 bp
ATGGTGTTCGTCATCACCGATCTGATGACTGATATCTTGGTCAAGTATAAGGGCTCCTTGCCAGATTTTTTTCCAGGAGTGGCACTCCGTGGTGGTGGAGGGGTTTGTGAAGCCTTCTACCGACGAAGTTCGCCAGGAAGTGTAAACGAAAAGCGGCTCCAGGAAGGGCAGGTTCAGGGGAGTGTGTTTGTGAAGAAACGAGTGCTGATGGCATTGGATGAATATAATCAAGATCAGAATAGGGGCAGGAATTCGGGCTGGGCAACGGCGGCGGAGAATGACTACCACCCAGCACAGGAGGACGAGACGGAGGCGTTAGGATTGTTGAGGATGGATGCCAGGCTCTGGGTAACAGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

120

Amino Acids

13.3

Weight (kDa)

5.16

Isoelectric Point (pI)

51.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0019949)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 160
AccB7I CCANNNNNTGG 1 cut(s) 345
AciI CCGC 3 cut(s) 154, 269, 272
AcsI RAATTY 1 cut(s) 250
AdeI CACNNNGTG 1 cut(s) 89
AfiI CCNNNNNNNGG 2 cut(s) 295, 345
AjnI CCWGG 4 cut(s) 73, 133, 159, 338
Alw26I GTCTC 1 cut(s) 299
AlwNI CAGNNNCTG 1 cut(s) 345
ApoI RAATTY 1 cut(s) 250
AsuHPI GGTGA 1 cut(s) 7
BanII GRGCYC 1 cut(s) 56
BccI CCATC 2 cut(s) 202, 325
BceAI ACGGC 1 cut(s) 282
BciT130I CCWGG 4 cut(s) 75, 135, 161, 340
BcoDI GTCTC 1 cut(s) 299
BfuAI ACCTGC 1 cut(s) 160
BisI GCNGC 2 cut(s) 155, 270
BlsI GCNGC 2 cut(s) 156, 271
Bme1390I CCNGG 4 cut(s) 75, 135, 161, 340
BmiI GGNNCC 2 cut(s) 55, 158
BmrFI CCNGG 4 cut(s) 75, 135, 161, 340
BmsI GCATC 1 cut(s) 325
BplI GAGNNNNNCTC 2 cut(s) 69, 101
BpmI CTGGAG 1 cut(s) 143
BsaJI CCNNGG 1 cut(s) 88
Bsc4I CCNNNNNNNGG 2 cut(s) 295, 345
BseBI CCWGG 4 cut(s) 75, 135, 161, 340
BseDI CCNNGG 1 cut(s) 88
BseGI GGATG 3 cut(s) 223, 336, 340
BseLI CCNNNNNNNGG 2 cut(s) 295, 345
BseYI CCCAGC 2 cut(s) 258, 289
BslI CCNNNNNNNGG 2 cut(s) 295, 345
BsmAI GTCTC 1 cut(s) 299
BsmBI CGTCTC 1 cut(s) 299
Bsp1286I GDGCHC 1 cut(s) 56
Bsp143I GATC 2 cut(s) 19, 232
BspACI CCGC 3 cut(s) 154, 269, 272
BspLI GGNNCC 2 cut(s) 55, 158
BspMI ACCTGC 1 cut(s) 160
BssECI CCNNGG 1 cut(s) 88
BssMI GATC 2 cut(s) 19, 232
Bst2UI CCWGG 4 cut(s) 75, 135, 161, 340
BstDSI CCRYGG 1 cut(s) 88
BstF5I GGATG 3 cut(s) 223, 336, 340
BstKTI GATC 2 cut(s) 22, 235
BstMAI GTCTC 1 cut(s) 299
BstMBI GATC 2 cut(s) 19, 232
BstMWI GCNNNNNNNGC 1 cut(s) 269
BstNI CCWGG 4 cut(s) 75, 135, 161, 340
BstSCI CCNGG 4 cut(s) 73, 133, 159, 338
BtgI CCRYGG 1 cut(s) 88
BtsCI GGATG 3 cut(s) 223, 336, 340
BveI ACCTGC 1 cut(s) 160
CaiI CAGNNNCTG 1 cut(s) 345
CviJI RGCY 5 cut(s) 54, 113, 157, 258, 343
CviKI_1 RGCY 5 cut(s) 54, 113, 157, 258, 343
DpnI GATC 2 cut(s) 21, 234
DpnII GATC 2 cut(s) 19, 232
DraIII CACNNNGTG 1 cut(s) 89
EciI GGCGGA 1 cut(s) 287
Eco24I GRGCYC 1 cut(s) 56
Eco32I GATATC 1 cut(s) 34
EcoRI GAATTC 1 cut(s) 250
EcoRII CCWGG 4 cut(s) 73, 133, 159, 338
EcoRV GATATC 1 cut(s) 34
EcoT38I GRGCYC 1 cut(s) 56
Esp3I CGTCTC 1 cut(s) 299
FaiI YATR 2 cut(s) 48, 225
FalI AAGNNNNNCTT 2 cut(s) 41, 73
Fnu4HI GCNGC 2 cut(s) 155, 270
FokI GGATG 3 cut(s) 230, 343, 347
FriOI GRGCYC 1 cut(s) 56
Fsp4HI GCNGC 2 cut(s) 155, 270
GluI GCNGC 2 cut(s) 155, 270
GsaI CCCAGC 2 cut(s) 262, 293
GsuI CTGGAG 1 cut(s) 143
HphI GGTGA 1 cut(s) 7
Hpy166II GTNNAC 1 cut(s) 145
Hpy188I TCNGA 2 cut(s) 24, 237
Hpy188III TCNNGA 1 cut(s) 230
Hpy8I GTNNAC 1 cut(s) 145
Hpy99I CGWCG 1 cut(s) 126
HpyAV CCTTC 2 cut(s) 124, 158
HpyF10VI GCNNNNNNNGC 1 cut(s) 269
Kzo9I GATC 2 cut(s) 19, 232
LmnI GCTCC 2 cut(s) 59, 162
LweI GCATC 1 cut(s) 325
MaeIII GTNAC 1 cut(s) 349
MalI GATC 2 cut(s) 21, 234
MboI GATC 2 cut(s) 19, 232
MboII GAAGA 1 cut(s) 205
MhlI GDGCHC 1 cut(s) 56
MluCI AATT 1 cut(s) 250
MnlI CCTC 4 cut(s) 92, 292, 304, 321
MspR9I CCNGG 4 cut(s) 75, 135, 161, 340
MvaI CCWGG 4 cut(s) 75, 135, 161, 340
MwoI GCNNNNNNNGC 1 cut(s) 269
NdeII GATC 2 cut(s) 19, 232
NlaIV GGNNCC 2 cut(s) 55, 158
PcsI WCGNNNNNNNCGW 1 cut(s) 15
PflMI CCANNNNNTGG 1 cut(s) 345
PfoI TCCNGGA 2 cut(s) 73, 159
PkrI GCNGC 2 cut(s) 156, 271
Psp6I CCWGG 4 cut(s) 73, 133, 159, 338
PspFI CCCAGC 2 cut(s) 258, 289
PspGI CCWGG 4 cut(s) 73, 133, 159, 338
PspN4I GGNNCC 2 cut(s) 55, 158
PstNI CAGNNNCTG 1 cut(s) 345
SatI GCNGC 2 cut(s) 155, 270
Sau3AI GATC 2 cut(s) 19, 232
ScrFI CCNGG 4 cut(s) 75, 135, 161, 340
SduI GDGCHC 1 cut(s) 56
SetI ASST 1 cut(s) 174
SfaNI GCATC 1 cut(s) 325
Sse9I AATT 1 cut(s) 250
SsiI CCGC 3 cut(s) 154, 269, 272
StyD4I CCNGG 4 cut(s) 73, 133, 159, 338
TasI AATT 1 cut(s) 250
TauI GCSGC 2 cut(s) 157, 272
TspDTI ATGAA 1 cut(s) 234
TspGWI ACGGA 2 cut(s) 77, 323
Van91I CCANNNNNTGG 1 cut(s) 345
XapI RAATTY 1 cut(s) 250
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.