Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0019949

Physical Location & Seq

Genomic Coordinates Reverse (-)

30072165 .. 30072671

Gene Structure 507 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008402

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGGTGTTCGTCATCACCAATTTGATGACCGATATCTTGGTCAAGTACAAGGGCTCCTTGCCGGATTTTTTCCAGGAGTGGCACTCCGTGGTGGTGGAGGGGTTTGTGAAGCCTTCTACCGATGAAGTTCAGGGGAGTGTGTTTGTGAAGAAACGAGTGCTGATGGCATTGGATGAATATAATCAAGATCATAATAGGGGCAGGAATTCGGGCAGGGCAACGGAGGCGGAGGATGACTACCACCCAGCACAGGGAGACGAGACAGAGGTGTTAGGATTGTTGAGGATGGATGCCAGGCTCTGGGTAACAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016043 GO:0017003 GO:0017004 GO:0017006 GO:0018063 GO:0019538 GO:0019866 GO:0020037 GO:0022607 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0034622 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0065003 GO:0071704 GO:0071840 GO:0097159 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CcmE

Protein Analysis

105

Amino Acids

11.9

Weight (kDa)

4.82

Isoelectric Point (pI)

31.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CcmE	PF03100	2 - 55	2.6e-07	CcmE domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0019949)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0244941
rosa_laevigata	RLG00000008402 RLG00000024958 RLG00000029546 RLG00000035092
rosa_multiflora	Rmu_sc0002462.1_g000007
rosa_roxburghii	Rroxscaffold_3G00242750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	300
AciI	CCGC	1 cut(s)	227
AcsI	RAATTY	1 cut(s)	205
AdeI	CACNNNGTG	1 cut(s)	88
AfaI	GTAC	1 cut(s)	47
AfiI	CCNNNNNNNGG	3 cut(s)	250, 251, 300
AjnI	CCWGG	2 cut(s)	72, 293
Alw26I	GTCTC	2 cut(s)	249, 254
AlwNI	CAGNNNCTG	1 cut(s)	300
ApoI	RAATTY	1 cut(s)	205
AsuHPI	GGTGA	1 cut(s)	7
BanII	GRGCYC	1 cut(s)	56
BccI	CCATC	2 cut(s)	157, 280
BciT130I	CCWGG	2 cut(s)	74, 295
BcoDI	GTCTC	2 cut(s)	249, 254
Bme1390I	CCNGG	2 cut(s)	74, 295
BmiI	GGNNCC	1 cut(s)	55
BmrFI	CCNGG	2 cut(s)	74, 295
BmsI	GCATC	1 cut(s)	280
BplI	GAGNNNNNCTC	2 cut(s)	68, 100
BsaJI	CCNNGG	1 cut(s)	87
BsaXI	ACNNNNNCTCC	2 cut(s)	38, 68
Bsc4I	CCNNNNNNNGG	3 cut(s)	250, 251, 300
BseBI	CCWGG	2 cut(s)	74, 295
BseDI	CCNNGG	1 cut(s)	87
BseGI	GGATG	4 cut(s)	178, 238, 291, 295
BseLI	CCNNNNNNNGG	3 cut(s)	250, 251, 300
BseYI	CCCAGC	1 cut(s)	244
BsiSI	CCGG	1 cut(s)	62
BslI	CCNNNNNNNGG	3 cut(s)	250, 251, 300
BsmAI	GTCTC	2 cut(s)	249, 254
BsmBI	CGTCTC	1 cut(s)	249
Bsp1286I	GDGCHC	1 cut(s)	56
Bsp143I	GATC	1 cut(s)	187
BspACI	CCGC	1 cut(s)	227
BspLI	GGNNCC	1 cut(s)	55
BssECI	CCNNGG	1 cut(s)	87
BssMI	GATC	1 cut(s)	187
Bst2UI	CCWGG	2 cut(s)	74, 295
BstDSI	CCRYGG	1 cut(s)	87
BstF5I	GGATG	4 cut(s)	178, 238, 291, 295
BstKTI	GATC	1 cut(s)	190
BstMAI	GTCTC	2 cut(s)	249, 254
BstMBI	GATC	1 cut(s)	187
BstMWI	GCNNNNNNNGC	1 cut(s)	224
BstNI	CCWGG	2 cut(s)	74, 295
BstSCI	CCNGG	2 cut(s)	72, 293
BtgI	CCRYGG	1 cut(s)	87
BtsCI	GGATG	4 cut(s)	178, 238, 291, 295
CaiI	CAGNNNCTG	1 cut(s)	300
Csp6I	GTAC	1 cut(s)	46
CviJI	RGCY	3 cut(s)	54, 112, 298
CviKI_1	RGCY	3 cut(s)	54, 112, 298
CviQI	GTAC	1 cut(s)	46
DpnI	GATC	1 cut(s)	189
DpnII	GATC	1 cut(s)	187
DraIII	CACNNNGTG	1 cut(s)	88
EciI	GGCGGA	1 cut(s)	242
Eco24I	GRGCYC	1 cut(s)	56
Eco32I	GATATC	1 cut(s)	34
EcoRI	GAATTC	1 cut(s)	205
EcoRII	CCWGG	2 cut(s)	72, 293
EcoRV	GATATC	1 cut(s)	34
EcoT38I	GRGCYC	1 cut(s)	56
Esp3I	CGTCTC	1 cut(s)	249
FaiI	YATR	2 cut(s)	180, 192
FalI	AAGNNNNNCTT	2 cut(s)	41, 73
FokI	GGATG	4 cut(s)	185, 245, 298, 302
FriOI	GRGCYC	1 cut(s)	56
GsaI	CCCAGC	1 cut(s)	248
HapII	CCGG	1 cut(s)	62
HpaII	CCGG	1 cut(s)	62
HphI	GGTGA	1 cut(s)	7
Hpy188III	TCNNGA	1 cut(s)	185
HpyAV	CCTTC	1 cut(s)	123
HpyF10VI	GCNNNNNNNGC	1 cut(s)	224
Kzo9I	GATC	1 cut(s)	187
LmnI	GCTCC	1 cut(s)	59
LweI	GCATC	1 cut(s)	280
MaeIII	GTNAC	1 cut(s)	304
MalI	GATC	1 cut(s)	189
MboI	GATC	1 cut(s)	187
MboII	GAAGA	1 cut(s)	160
MhlI	GDGCHC	1 cut(s)	56
MluCI	AATT	2 cut(s)	19, 205
MnlI	CCTC	5 cut(s)	91, 217, 223, 259, 276
MspI	CCGG	1 cut(s)	62
MspR9I	CCNGG	2 cut(s)	74, 295
MvaI	CCWGG	2 cut(s)	74, 295
MwoI	GCNNNNNNNGC	1 cut(s)	224
NdeII	GATC	1 cut(s)	187
NlaIV	GGNNCC	1 cut(s)	55
PflMI	CCANNNNNTGG	1 cut(s)	300
PfoI	TCCNGGA	1 cut(s)	72
Psp6I	CCWGG	2 cut(s)	72, 293
PspFI	CCCAGC	1 cut(s)	244
PspGI	CCWGG	2 cut(s)	72, 293
PspN4I	GGNNCC	1 cut(s)	55
PstNI	CAGNNNCTG	1 cut(s)	300
RsaI	GTAC	1 cut(s)	47
RsaNI	GTAC	1 cut(s)	46
Sau3AI	GATC	1 cut(s)	187
ScrFI	CCNGG	2 cut(s)	74, 295
SduI	GDGCHC	1 cut(s)	56
SetI	ASST	1 cut(s)	270
SfaNI	GCATC	1 cut(s)	280
Sse9I	AATT	2 cut(s)	19, 205
SsiI	CCGC	1 cut(s)	227
StyD4I	CCNGG	2 cut(s)	72, 293
TaqII	GACCGA	1 cut(s)	44
TasI	AATT	2 cut(s)	19, 205
TatI	WGTACW	1 cut(s)	45
TspDTI	ATGAA	2 cut(s)	138, 189
TspGWI	ACGGA	2 cut(s)	76, 236
Van91I	CCANNNNNTGG	1 cut(s)	300
XapI	RAATTY	1 cut(s)	205

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.