RchiOBHm_Chr6g0245001
HSP70 Family

Belongs to the heat shock protein 70 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0021166
Physical Location & Seq
Reverse (-)
938995 .. 941405
2411 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ21958

Sequence Viewer

Length: 801 bp
ATGTTAATTTTGGGTTCAAACACACCATCTTATGTTGCTTTCACTTACACACGGCGTTTAGGTGATGCTGCTAAGAACCAGGCCGTCATGAACCCCATTAATACTGTTTTTGATGCAAGGCGTTTGATTGGTAGGAGATTCAGTGATTCATGTGTTAGAAGTAACATCAAGTTATGGCCTTTCAAGGTGATTTCTAGCGATTATAACAAACCGATGATTGTGGTCAAGTATAAGAATGAAACGAAACAATTAGCTCCGGAAGAGATATCATCAATGGTTCTCTATAAGATGCGTGAAATAGTAGAGGTCTATCTTGGATCTGTAGTAAAGAATGCAGTTGTAACTGTCCCAGCATATTTTAATGACTCTCAAAGACAGGCCACAAAGGACGTTGGTTTAATTGCCGGCATGAACGTTATGCATATCATCAATGAGCCAACAGCTGCGGCAATTGCATATGGTCTTGACAAAAAAGTCACTAGCACTAGTGGGAAGAATGTTCTCATATTCGATCTTGGTGGTGGTACCTTTGATGTTTCCATTCTTAAAATTGAAGATGAGATTTTTGAAGTGAAAGCTACTACTAGAGATACCCATCTTGGAGGTGAAGATTTTGACAATAGAATGGTGAACCATTTTGTACAAGAGTTTGAGAAGAAACACAAGAAGGACATTAGCAAAAACCCTGAAGCATTGAGGAGATTGAGAACATCTTGTGAGAGAGCGAAAAGGACTCTTTCTTCAACTGCTAAAACCACTATTGAAATTGATTCTATATTTGAGGGAAAAGACATTTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 ko04010 ko04141 ko04144 ko04213 ko04612 ko04915 ko05134 ko05145 ko05162 ko05164 ko05169 map03040 map04010 map04141 map04144 map04213 map04612 map04915 map05134 map05145 map05162 map05164 map05169
Pfam Domains
Protein Families
HSP70

Protein Analysis

266

Amino Acids

29.91

Weight (kDa)

9.25

Isoelectric Point (pI)

52.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSP70 PF00012 7 - 259 2.6e-106 Hsp70 protein
MreB_Mbl PF06723 96 - 218 1e-11 MreB/Mbl protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021166)

Species Orthologous Gene IDs
malus_domestica MD16G1239900.v1.1
rosa_chinensis RchiOBHm_Chr6g0245001 RchiOBHm_Chr7g0201211
rosa_rugosa Rorug07G0062300
rosa_samantha Rh7AG189400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 204
AasI GACNNNNNNGTC 1 cut(s) 473
Acc65I GGTACC 1 cut(s) 524
AccB1I GGYRCC 1 cut(s) 524
AccIII TCCGGA 1 cut(s) 256
AciI CCGC 1 cut(s) 446
AclI AACGTT 1 cut(s) 414
AclWI GGATC 1 cut(s) 325
AcuI CTGAAG 1 cut(s) 708
AfaI GTAC 2 cut(s) 526, 642
AgsI TTSAA 6 cut(s) 18, 184, 554, 569, 744, 764
AhlI ACTAGT 1 cut(s) 485
AjnI CCWGG 1 cut(s) 78
AluBI AGCT 3 cut(s) 254, 443, 578
AluI AGCT 3 cut(s) 254, 443, 578
AlwI GGATC 1 cut(s) 325
Aor13HI TCCGGA 1 cut(s) 256
AoxI GGCC 3 cut(s) 81, 176, 378
ApeKI GCWGC 2 cut(s) 68, 443
AseI ATTAAT 1 cut(s) 99
Asp718I GGTACC 1 cut(s) 524
AsuHPI GGTGA 4 cut(s) 74, 199, 617, 640
BanI GGYRCC 1 cut(s) 524
BbvI GCAGC 2 cut(s) 55, 430
BccI CCATC 2 cut(s) 34, 603
BceAI ACGGC 2 cut(s) 68, 68
BciT130I CCWGG 1 cut(s) 80
BcuI ACTAGT 1 cut(s) 485
BfaI CTAG 4 cut(s) 195, 480, 486, 585
BfmI CTRYAG 1 cut(s) 321
BisI GCNGC 3 cut(s) 69, 444, 447
BlsI GCNGC 3 cut(s) 70, 445, 448
Bme1390I CCNGG 1 cut(s) 80
BmiI GGNNCC 1 cut(s) 526
BmrFI CCNGG 1 cut(s) 80
BmsI GCATC 3 cut(s) 55, 103, 279
BsaBI GATNNNNATC 1 cut(s) 594
BsaWI WCCGGW 1 cut(s) 256
BsaXI ACNNNNNCTCC 2 cut(s) 127, 157
Bse118I RCCGGY 1 cut(s) 404
Bse8I GATNNNNATC 1 cut(s) 594
BseAI TCCGGA 1 cut(s) 256
BseBI CCWGG 1 cut(s) 80
BseJI GATNNNNATC 1 cut(s) 594
BseRI GAGGAG 1 cut(s) 712
BseXI GCAGC 2 cut(s) 55, 430
BseYI CCCAGC 1 cut(s) 349
BshFI GGCC 3 cut(s) 83, 178, 380
BshNI GGYRCC 1 cut(s) 524
BsiSI CCGG 2 cut(s) 257, 405
BslFI GGGAC 1 cut(s) 332
BsmFI GGGAC 1 cut(s) 332
BsmI GAATGC 1 cut(s) 337
BsnI GGCC 3 cut(s) 83, 178, 380
Bsp13I TCCGGA 1 cut(s) 256
Bsp1407I TGTACA 1 cut(s) 640
Bsp143I GATC 2 cut(s) 317, 511
BspACI CCGC 1 cut(s) 446
BspANI GGCC 3 cut(s) 83, 178, 380
BspEI TCCGGA 1 cut(s) 256
BspHI TCATGA 1 cut(s) 87
BspLI GGNNCC 1 cut(s) 526
BspPI GGATC 1 cut(s) 325
BspT107I GGYRCC 1 cut(s) 524
BsrFI RCCGGY 1 cut(s) 404
BsrGI TGTACA 1 cut(s) 640
BssAI RCCGGY 1 cut(s) 404
BssMI GATC 2 cut(s) 317, 511
Bst2UI CCWGG 1 cut(s) 80
Bst4CI ACNGT 2 cut(s) 106, 346
Bst6I CTCTTC 1 cut(s) 255
BstAUI TGTACA 1 cut(s) 640
BstC8I GCNNGC 1 cut(s) 406
BstDEI CTNAG 1 cut(s) 72
BstKTI GATC 2 cut(s) 320, 514
BstMBI GATC 2 cut(s) 317, 511
BstMWI GCNNNNNNNGC 1 cut(s) 452
BstNI CCWGG 1 cut(s) 80
BstSCI CCNGG 1 cut(s) 78
BstSFI CTRYAG 1 cut(s) 321
BstV1I GCAGC 2 cut(s) 55, 430
BstX2I RGATCY 1 cut(s) 317
BstYI RGATCY 1 cut(s) 317
BsuRI GGCC 3 cut(s) 83, 178, 380
BtsIMutI CAGTG 1 cut(s) 148
Cac8I GCNNGC 1 cut(s) 406
CciI TCATGA 1 cut(s) 87
Cfr10I RCCGGY 1 cut(s) 404
Csp6I GTAC 2 cut(s) 525, 641
CviAII CATG 3 cut(s) 88, 150, 409
CviJI RGCY 7 cut(s) 83, 178, 254, 380, 436, 443, 578
CviKI_1 RGCY 7 cut(s) 83, 178, 254, 380, 436, 443, 578
CviQI GTAC 2 cut(s) 525, 641
DdeI CTNAG 1 cut(s) 72
DpnI GATC 2 cut(s) 319, 513
DpnII GATC 2 cut(s) 317, 511
DrdI GACNNNNNNGTC 1 cut(s) 473
DseDI GACNNNNNNGTC 1 cut(s) 473
Eam1104I CTCTTC 1 cut(s) 255
EarI CTCTTC 1 cut(s) 255
Eco32I GATATC 1 cut(s) 267
Eco57I CTGAAG 1 cut(s) 708
EcoRII CCWGG 1 cut(s) 78
EcoRV GATATC 1 cut(s) 267
EcoT22I ATGCAT 1 cut(s) 423
FaeI CATG 3 cut(s) 91, 153, 412
FaqI GGGAC 1 cut(s) 332
FatI CATG 3 cut(s) 87, 149, 408
FauNDI CATATG 1 cut(s) 457
Fnu4HI GCNGC 3 cut(s) 69, 444, 447
Fsp4HI GCNGC 3 cut(s) 69, 444, 447
FspBI CTAG 4 cut(s) 195, 480, 486, 585
GluI GCNGC 3 cut(s) 69, 444, 447
GsaI CCCAGC 1 cut(s) 353
HaeIII GGCC 3 cut(s) 83, 178, 380
HapII CCGG 2 cut(s) 257, 405
Hin1II CATG 3 cut(s) 91, 153, 412
HinfI GANTC 5 cut(s) 138, 146, 365, 733, 770
HpaII CCGG 2 cut(s) 257, 405
HphI GGTGA 4 cut(s) 74, 199, 617, 640
Hpy166II GTNNAC 1 cut(s) 631
Hpy188III TCNNGA 3 cut(s) 88, 257, 464
Hpy8I GTNNAC 1 cut(s) 631
HpyAV CCTTC 1 cut(s) 661
HpyCH4III ACNGT 2 cut(s) 106, 346
HpyCH4IV ACGT 2 cut(s) 390, 414
HpyCH4V TGCA 4 cut(s) 116, 335, 421, 455
HpyF10VI GCNNNNNNNGC 1 cut(s) 452
HpyF3I CTNAG 1 cut(s) 72
HpySE526I ACGT 2 cut(s) 390, 414
Hsp92II CATG 3 cut(s) 91, 153, 412
Kpn2I TCCGGA 1 cut(s) 256
KpnI GGTACC 1 cut(s) 528
KroI GCCGGC 1 cut(s) 404
KroNI GCCGGC 1 cut(s) 406
Kzo9I GATC 2 cut(s) 317, 511
LmnI GCTCC 1 cut(s) 259
LpnPI CCDG 7 cut(s) 65, 92, 270, 362, 363, 418, 699
Lsp1109I GCAGC 2 cut(s) 55, 430
LweI GCATC 3 cut(s) 55, 103, 279
MaeI CTAG 4 cut(s) 195, 480, 486, 585
MaeII ACGT 2 cut(s) 390, 414
MaeIII GTNAC 3 cut(s) 161, 340, 475
MalI GATC 2 cut(s) 319, 513
MboI GATC 2 cut(s) 317, 511
MboII GAAGA 6 cut(s) 272, 505, 566, 620, 667, 732
MfeI CAATTG 1 cut(s) 450
MflI RGATCY 1 cut(s) 317
MluCI AATT 6 cut(s) 6, 248, 399, 450, 549, 765
MlyI GAGTC 2 cut(s) 359, 727
MnlI CCTC 4 cut(s) 298, 596, 690, 775
Mph1103I ATGCAT 1 cut(s) 423
MroI TCCGGA 1 cut(s) 256
MroNI GCCGGC 1 cut(s) 404
MseI TTAA 5 cut(s) 5, 99, 360, 398, 546
MspA1I CMGCKG 1 cut(s) 443
MspI CCGG 2 cut(s) 257, 405
MspR9I CCNGG 1 cut(s) 80
MunI CAATTG 1 cut(s) 450
Mva1269I GAATGC 1 cut(s) 337
MvaI CCWGG 1 cut(s) 80
MwoI GCNNNNNNNGC 1 cut(s) 452
NaeI GCCGGC 1 cut(s) 406
NdeI CATATG 1 cut(s) 457
NdeII GATC 2 cut(s) 317, 511
NgoMIV GCCGGC 1 cut(s) 404
NlaIII CATG 3 cut(s) 91, 153, 412
NlaIV GGNNCC 1 cut(s) 526
NmuCI GTSAC 1 cut(s) 475
NsiI ATGCAT 1 cut(s) 423
PagI TCATGA 1 cut(s) 87
PctI GAATGC 1 cut(s) 337
PdiI GCCGGC 1 cut(s) 406
PfeI GAWTC 3 cut(s) 138, 146, 770
PkrI GCNGC 3 cut(s) 70, 445, 448
PleI GAGTC 2 cut(s) 359, 727
PpsI GAGTC 2 cut(s) 359, 727
PshBI ATTAAT 1 cut(s) 99
PsiI TTATAA 1 cut(s) 204
Psp1406I AACGTT 1 cut(s) 414
Psp6I CCWGG 1 cut(s) 78
PspFI CCCAGC 1 cut(s) 349
PspGI CCWGG 1 cut(s) 78
PspN4I GGNNCC 1 cut(s) 526
PsuI RGATCY 1 cut(s) 317
PvuII CAGCTG 1 cut(s) 443
RsaI GTAC 2 cut(s) 526, 642
RsaNI GTAC 2 cut(s) 525, 641
SaqAI TTAA 5 cut(s) 5, 99, 360, 398, 546
SatI GCNGC 3 cut(s) 69, 444, 447
Sau3AI GATC 2 cut(s) 317, 511
SchI GAGTC 2 cut(s) 359, 727
ScrFI CCNGG 1 cut(s) 80
SfaNI GCATC 3 cut(s) 55, 103, 279
SfcI CTRYAG 1 cut(s) 321
SpeI ACTAGT 1 cut(s) 485
Sse9I AATT 6 cut(s) 6, 248, 399, 450, 549, 765
SsiI CCGC 1 cut(s) 446
SspMI CTAG 4 cut(s) 195, 480, 486, 585
StyD4I CCNGG 1 cut(s) 78
TaaI ACNGT 2 cut(s) 106, 346
TaiI ACGT 2 cut(s) 393, 417
TaqI TCGA 1 cut(s) 510
TasI AATT 6 cut(s) 6, 248, 399, 450, 549, 765
TatI WGTACW 1 cut(s) 640
TauI GCSGC 1 cut(s) 449
TfiI GAWTC 3 cut(s) 138, 146, 770
Tru1I TTAA 5 cut(s) 5, 99, 360, 398, 546
Tru9I TTAA 5 cut(s) 5, 99, 360, 398, 546
TscAI CASTG 1 cut(s) 148
TseFI GTSAC 1 cut(s) 475
TseI GCWGC 2 cut(s) 68, 443
Tsp45I GTSAC 1 cut(s) 475
TspDTI ATGAA 4 cut(s) 104, 138, 252, 425
TspRI CASTG 1 cut(s) 148
VspI ATTAAT 1 cut(s) 99
XspI CTAG 4 cut(s) 195, 480, 486, 585
Zsp2I ATGCAT 1 cut(s) 423
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.