Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0021166

Physical Location & Seq

Genomic Coordinates Reverse (-)

18863878 .. 18864714

Gene Structure 837 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ18013

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGCCGCCAAGAACCAAAGACGTACATCGGATCATCAGTCAAGAATGTTGTTGTAACTGCATGTCCCAGCATACTTTAATGACTTCCAACGCCGGCCAGGCTACAAAAGATGCTGGTATAATTGCAGGTATGAACGTCATGCGCATCATCAATGAGCCTACCGCTACTGCTATTGCCTATGGTCTTGACAAAAAAGGTAGCACTGTTGGTGGAAAGAACGTTCTTATTTTTGATCTTGGTGGTGGCACTTTCGATGTTTCCCTTCTCAAAATTGAAGAGGGAATTTTCGAGGTGCAAGCTACTGCTGGAGATTCCCATCTTGGAGGTGAAGATTTTGACAACCGAATGGTGAACCATTTTGTACAAGAGTTTAAGAGGAAACACAAAAAAGATATAAGCAATAACCCCAAATTAAAGCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000302 GO:0003674 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005794 GO:0005829 GO:0005886 GO:0006464 GO:0006807 GO:0006950 GO:0006979 GO:0008144 GO:0008150 GO:0008152 GO:0009266 GO:0009314 GO:0009408 GO:0009416 GO:0009605 GO:0009607 GO:0009615 GO:0009617 GO:0009628 GO:0009636 GO:0009642 GO:0009644 GO:0009987 GO:0010035 GO:0010038 GO:0012505 GO:0016020 GO:0016567 GO:0017076 GO:0019538 GO:0019899 GO:0030312 GO:0030554 GO:0031090 GO:0031625 GO:0032446 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0042221 GO:0042493 GO:0042542 GO:0043167 GO:0043168 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046677 GO:0046686 GO:0048046 GO:0050896 GO:0051704 GO:0051707 GO:0070647 GO:0071704 GO:0071944 GO:0097159 GO:0097367 GO:0098588 GO:0098805 GO:1901265 GO:1901363 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko03040 ko04010 ko04141 ko04144 ko04213 ko04612 ko04915 ko05134 ko05145 ko05162 ko05164 ko05169 map03040 map04010 map04141 map04144 map04213 map04612 map04915 map05134 map05145 map05162 map05164 map05169

Pfam Domains

Protein Families

HSP70

Protein Analysis

140

Amino Acids

15.3

Weight (kDa)

7.72

Isoelectric Point (pI)

36.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MreB_Mbl	PF06723	28 - 125	8.1e-06	MreB/Mbl protein
HSP70	PF00012	32 - 137	7.4e-50	Hsp70 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0021166)

Species	Orthologous Gene IDs
malus_domestica	MD16G1239900.v1.1
rosa_chinensis	RchiOBHm_Chr6g0245001 RchiOBHm_Chr7g0201211
rosa_rugosa	Rorug07G0062300
rosa_samantha	Rh7AG189400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	143
Acc36I	ACCTGC	1 cut(s)	116
AciI	CCGC	2 cut(s)	5, 162
AclI	AACGTT	1 cut(s)	219
AclWI	GGATC	1 cut(s)	38
AcoI	YGGCCR	1 cut(s)	94
AcsI	RAATTY	1 cut(s)	282
AfaI	GTAC	2 cut(s)	24, 363
AgsI	TTSAA	1 cut(s)	275
AjnI	CCWGG	1 cut(s)	96
AloI	GAACNNNNNNTCC	2 cut(s)	204, 236
AluBI	AGCT	1 cut(s)	299
AluI	AGCT	1 cut(s)	299
AlwI	GGATC	1 cut(s)	38
AoxI	GGCC	1 cut(s)	94
ApoI	RAATTY	1 cut(s)	282
AspLEI	GCGC	1 cut(s)	144
AsuHPI	GGTGA	2 cut(s)	338, 361
BccI	CCATC	1 cut(s)	324
BciT130I	CCWGG	1 cut(s)	98
BfuAI	ACCTGC	1 cut(s)	116
BglI	GCCNNNNNGGC	1 cut(s)	98
BisI	GCNGC	1 cut(s)	5
BlsI	GCNGC	1 cut(s)	6
Bme1390I	CCNGG	1 cut(s)	98
BmrFI	CCNGG	1 cut(s)	98
BmsI	GCATC	2 cut(s)	100, 153
BpmI	CTGGAG	1 cut(s)	327
BsaBI	GATNNNNATC	1 cut(s)	315
Bse118I	RCCGGY	1 cut(s)	92
Bse8I	GATNNNNATC	1 cut(s)	315
BseBI	CCWGG	1 cut(s)	98
BseJI	GATNNNNATC	1 cut(s)	315
BseYI	CCCAGC	1 cut(s)	66
BshFI	GGCC	1 cut(s)	96
BsiSI	CCGG	1 cut(s)	93
BslFI	GGGAC	1 cut(s)	49
BsmFI	GGGAC	1 cut(s)	49
BsnI	GGCC	1 cut(s)	96
Bsp1407I	TGTACA	1 cut(s)	361
Bsp143I	GATC	2 cut(s)	30, 232
BspACI	CCGC	2 cut(s)	5, 162
BspANI	GGCC	1 cut(s)	96
BspMI	ACCTGC	1 cut(s)	116
BspPI	GGATC	1 cut(s)	38
BsrFI	RCCGGY	1 cut(s)	92
BsrGI	TGTACA	1 cut(s)	361
BssAI	RCCGGY	1 cut(s)	92
BssMI	GATC	2 cut(s)	30, 232
Bst2UI	CCWGG	1 cut(s)	98
Bst4CI	ACNGT	1 cut(s)	205
Bst6I	CTCTTC	1 cut(s)	270
BstAUI	TGTACA	1 cut(s)	361
BstC8I	GCNNGC	2 cut(s)	94, 297
BstHHI	GCGC	1 cut(s)	144
BstKTI	GATC	2 cut(s)	33, 235
BstMBI	GATC	2 cut(s)	30, 232
BstMWI	GCNNNNNNNGC	1 cut(s)	98
BstNI	CCWGG	1 cut(s)	98
BstNSI	RCATGY	1 cut(s)	64
BstSCI	CCNGG	1 cut(s)	96
BsuRI	GGCC	1 cut(s)	96
BtsIMutI	CAGTG	1 cut(s)	201
BveI	ACCTGC	1 cut(s)	116
Cac8I	GCNNGC	2 cut(s)	94, 297
CfoI	GCGC	1 cut(s)	144
Cfr10I	RCCGGY	1 cut(s)	92
Csp6I	GTAC	2 cut(s)	23, 362
CviAII	CATG	2 cut(s)	61, 139
CviJI	RGCY	4 cut(s)	96, 101, 157, 299
CviKI_1	RGCY	4 cut(s)	96, 101, 157, 299
CviQI	GTAC	2 cut(s)	23, 362
DpnI	GATC	2 cut(s)	32, 234
DpnII	GATC	2 cut(s)	30, 232
EaeI	YGGCCR	1 cut(s)	94
Eam1104I	CTCTTC	1 cut(s)	270
EarI	CTCTTC	1 cut(s)	270
EcoRII	CCWGG	1 cut(s)	96
FaeI	CATG	2 cut(s)	64, 142
FaiI	YATR	7 cut(s)	62, 72, 119, 131, 140, 180, 395
FaqI	GGGAC	1 cut(s)	49
FatI	CATG	2 cut(s)	60, 138
Fnu4HI	GCNGC	1 cut(s)	5
Fsp4HI	GCNGC	1 cut(s)	5
FspAI	RTGCGCAY	1 cut(s)	143
FspI	TGCGCA	1 cut(s)	143
GlaI	GCGC	1 cut(s)	143
GluI	GCNGC	1 cut(s)	5
GsaI	CCCAGC	1 cut(s)	70
GsuI	CTGGAG	1 cut(s)	327
HaeIII	GGCC	1 cut(s)	96
HapII	CCGG	1 cut(s)	93
HhaI	GCGC	1 cut(s)	144
Hin1II	CATG	2 cut(s)	64, 142
Hin6I	GCGC	1 cut(s)	142
HinP1I	GCGC	1 cut(s)	142
HinfI	GANTC	1 cut(s)	311
HpaII	CCGG	1 cut(s)	93
HphI	GGTGA	2 cut(s)	338, 361
Hpy166II	GTNNAC	1 cut(s)	352
Hpy188I	TCNGA	1 cut(s)	30
Hpy188III	TCNNGA	2 cut(s)	41, 185
Hpy8I	GTNNAC	1 cut(s)	352
HpyAV	CCTTC	1 cut(s)	272
HpyCH4III	ACNGT	1 cut(s)	205
HpyCH4IV	ACGT	3 cut(s)	21, 135, 219
HpyCH4V	TGCA	3 cut(s)	60, 125, 295
HpyF10VI	GCNNNNNNNGC	1 cut(s)	98
HpySE526I	ACGT	3 cut(s)	21, 135, 219
Hsp92II	CATG	2 cut(s)	64, 142
HspAI	GCGC	1 cut(s)	142
KroI	GCCGGC	1 cut(s)	92
KroNI	GCCGGC	1 cut(s)	94
Kzo9I	GATC	2 cut(s)	30, 232
LpnPI	CCDG	7 cut(s)	80, 83, 99, 106, 110, 111, 291
LweI	GCATC	2 cut(s)	100, 153
MaeII	ACGT	3 cut(s)	21, 135, 219
MaeIII	GTNAC	1 cut(s)	53
MalI	GATC	2 cut(s)	32, 234
MboI	GATC	2 cut(s)	30, 232
MboII	GAAGA	2 cut(s)	287, 341
MluCI	AATT	4 cut(s)	120, 270, 282, 410
MmeI	TCCRAC	1 cut(s)	111
MnlI	CCTC	4 cut(s)	271, 283, 317, 369
MroNI	GCCGGC	1 cut(s)	92
MseI	TTAA	3 cut(s)	77, 372, 413
MspI	CCGG	1 cut(s)	93
MspR9I	CCNGG	1 cut(s)	98
MvaI	CCWGG	1 cut(s)	98
MwoI	GCNNNNNNNGC	1 cut(s)	98
NaeI	GCCGGC	1 cut(s)	94
NdeII	GATC	2 cut(s)	30, 232
NgoMIV	GCCGGC	1 cut(s)	92
NlaIII	CATG	2 cut(s)	64, 142
NsbI	TGCGCA	1 cut(s)	143
NspI	RCATGY	1 cut(s)	64
PdiI	GCCGGC	1 cut(s)	94
PfeI	GAWTC	1 cut(s)	311
PkrI	GCNGC	1 cut(s)	6
Psp1406I	AACGTT	1 cut(s)	219
Psp6I	CCWGG	1 cut(s)	96
PspFI	CCCAGC	1 cut(s)	66
PspGI	CCWGG	1 cut(s)	96
RsaI	GTAC	2 cut(s)	24, 363
RsaNI	GTAC	2 cut(s)	23, 362
SaqAI	TTAA	3 cut(s)	77, 372, 413
SatI	GCNGC	1 cut(s)	5
Sau3AI	GATC	2 cut(s)	30, 232
ScrFI	CCNGG	1 cut(s)	98
SetI	ASST	8 cut(s)	24, 130, 138, 199, 222, 294, 301, 328
SfaNI	GCATC	2 cut(s)	100, 153
Sse9I	AATT	4 cut(s)	120, 270, 282, 410
SsiI	CCGC	2 cut(s)	5, 162
StyD4I	CCNGG	1 cut(s)	96
TaaI	ACNGT	1 cut(s)	205
TaiI	ACGT	3 cut(s)	24, 138, 222
TaqI	TCGA	2 cut(s)	252, 288
TasI	AATT	4 cut(s)	120, 270, 282, 410
TatI	WGTACW	1 cut(s)	361
TauI	GCSGC	1 cut(s)	7
TfiI	GAWTC	1 cut(s)	311
Tru1I	TTAA	3 cut(s)	77, 372, 413
Tru9I	TTAA	3 cut(s)	77, 372, 413
TscAI	CASTG	1 cut(s)	208
TspDTI	ATGAA	1 cut(s)	146
TspRI	CASTG	1 cut(s)	208
XapI	RAATTY	1 cut(s)	282
XceI	RCATGY	1 cut(s)	64

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.