RchiOBHm_Chr6g0245101
HSP70 Family

Belongs to the heat shock protein 70 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0021447
Physical Location & Seq
Forward (+)
1029487 .. 1029840
354 bp
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UTR
Exon/CDS
Intron
PRQ21967

Sequence Viewer

Length: 354 bp
ATGGAGACTGTGGAGAATTGTGTGAGGGATGCTAAAAGTGATAGGAAAATTGTTGATGATATTGTTCTTGTTGGTGGATCTACTAGAATTCCCAAGGGACAACAACTATTGCAAGATTTCTTTAATGGTAAGGAGCTTTGCAAGAGCATCAATCCTGACGAAGCAATTGCATATGGTGCTGCCTTACAGGCTGCAGTTTTGCGTGGTGGCATCGAGAAGGTTCAAGACTTACTCTTGTTGGATGTAACTCCACATTCCCTTGGTTGTATGCGTTACACAGGAGAATATAGAGTTTATGTCCCAAGAAACACTACCATTCCCACCAAAAAACTAAAATGGCCACAACTGTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 ko04010 ko04141 ko04144 ko04213 ko04612 ko04915 ko05134 ko05145 ko05162 ko05164 ko05169 map03040 map04010 map04141 map04144 map04213 map04612 map04915 map05134 map05145 map05162 map05164 map05169
Pfam Domains
Protein Families
HSP70

Protein Analysis

117

Amino Acids

13.1

Weight (kDa)

8.45

Isoelectric Point (pI)

11.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSP70 PF00012 2 - 111 1e-35 Hsp70 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021447)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0245101 RchiOBHm_Chr6g0245111 RchiOBHm_Chr6g0263441
rosa_rugosa Rorug05G0512200
rosa_samantha Rh6BG022900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 85
AcoI YGGCCR 1 cut(s) 338
AcsI RAATTY 1 cut(s) 87
AgsI TTSAA 1 cut(s) 224
AluBI AGCT 1 cut(s) 136
AluI AGCT 1 cut(s) 136
AlwI GGATC 1 cut(s) 85
AoxI GGCC 1 cut(s) 338
ApeKI GCWGC 2 cut(s) 179, 191
ApoI RAATTY 1 cut(s) 87
BalI TGGCCA 1 cut(s) 340
BbvI GCAGC 2 cut(s) 166, 178
BcgI CGANNNNNNTGC 2 cut(s) 149, 183
BfaI CTAG 1 cut(s) 84
BfmI CTRYAG 1 cut(s) 192
BglI GCCNNNNNGGC 1 cut(s) 188
BisI GCNGC 2 cut(s) 180, 192
BlsI GCNGC 2 cut(s) 181, 193
BmsI GCATC 3 cut(s) 19, 156, 219
BsaJI CCNNGG 2 cut(s) 93, 259
BseDI CCNNGG 2 cut(s) 93, 259
BseGI GGATG 2 cut(s) 34, 247
BseXI GCAGC 2 cut(s) 166, 178
BshFI GGCC 1 cut(s) 340
BslFI GGGAC 2 cut(s) 111, 284
BsmFI GGGAC 2 cut(s) 111, 284
BsnI GGCC 1 cut(s) 340
Bsp143I GATC 1 cut(s) 77
BspANI GGCC 1 cut(s) 340
BspMAI CTGCAG 1 cut(s) 196
BspPI GGATC 1 cut(s) 85
BssECI CCNNGG 2 cut(s) 93, 259
BssMI GATC 1 cut(s) 77
BssT1I CCWWGG 2 cut(s) 93, 259
Bst4CI ACNGT 2 cut(s) 10, 348
BstAPI GCANNNNNTGC 1 cut(s) 176
BstF5I GGATG 2 cut(s) 34, 247
BstKTI GATC 1 cut(s) 80
BstMBI GATC 1 cut(s) 77
BstMWI GCNNNNNNNGC 2 cut(s) 176, 188
BstSFI CTRYAG 1 cut(s) 192
BstV1I GCAGC 2 cut(s) 166, 178
BstX2I RGATCY 1 cut(s) 77
BstYI RGATCY 1 cut(s) 77
BsuRI GGCC 1 cut(s) 340
BtsCI GGATG 2 cut(s) 34, 247
CviJI RGCY 3 cut(s) 136, 191, 340
CviKI_1 RGCY 3 cut(s) 136, 191, 340
DpnI GATC 1 cut(s) 79
DpnII GATC 1 cut(s) 77
EaeI YGGCCR 1 cut(s) 338
Eco130I CCWWGG 2 cut(s) 93, 259
EcoRI GAATTC 1 cut(s) 87
EcoT14I CCWWGG 2 cut(s) 93, 259
ErhI CCWWGG 2 cut(s) 93, 259
FaiI YATR 5 cut(s) 172, 174, 269, 288, 297
FaqI GGGAC 2 cut(s) 111, 284
FauNDI CATATG 1 cut(s) 172
Fnu4HI GCNGC 2 cut(s) 180, 192
FokI GGATG 2 cut(s) 41, 254
Fsp4HI GCNGC 2 cut(s) 180, 192
FspBI CTAG 1 cut(s) 84
GluI GCNGC 2 cut(s) 180, 192
HaeIII GGCC 1 cut(s) 340
Hpy188III TCNNGA 3 cut(s) 155, 214, 224
HpyAV CCTTC 1 cut(s) 211
HpyCH4III ACNGT 2 cut(s) 10, 348
HpyCH4V TGCA 4 cut(s) 112, 141, 170, 194
HpyF10VI GCNNNNNNNGC 2 cut(s) 176, 188
Kzo9I GATC 1 cut(s) 77
LmnI GCTCC 1 cut(s) 133
LpnPI CCDG 3 cut(s) 168, 173, 264
Lsp1109I GCAGC 2 cut(s) 166, 178
LweI GCATC 3 cut(s) 19, 156, 219
MaeI CTAG 1 cut(s) 84
MaeIII GTNAC 2 cut(s) 244, 272
MalI GATC 1 cut(s) 79
MboI GATC 1 cut(s) 77
MfeI CAATTG 1 cut(s) 165
MflI RGATCY 1 cut(s) 77
MlsI TGGCCA 1 cut(s) 340
MluCI AATT 4 cut(s) 16, 48, 87, 165
MluNI TGGCCA 1 cut(s) 340
MmeI TCCRAC 1 cut(s) 219
MnlI CCTC 1 cut(s) 18
Mox20I TGGCCA 1 cut(s) 340
MscI TGGCCA 1 cut(s) 340
MseI TTAA 2 cut(s) 123, 352
Msp20I TGGCCA 1 cut(s) 340
MunI CAATTG 1 cut(s) 165
MwoI GCNNNNNNNGC 2 cut(s) 176, 188
NdeI CATATG 1 cut(s) 172
NdeII GATC 1 cut(s) 77
PkrI GCNGC 2 cut(s) 181, 193
PstI CTGCAG 1 cut(s) 196
PsuI RGATCY 1 cut(s) 77
SaqAI TTAA 2 cut(s) 123, 352
SatI GCNGC 2 cut(s) 180, 192
Sau3AI GATC 1 cut(s) 77
SetI ASST 2 cut(s) 138, 222
SfaNI GCATC 3 cut(s) 19, 156, 219
SfcI CTRYAG 1 cut(s) 192
Sse9I AATT 4 cut(s) 16, 48, 87, 165
SspMI CTAG 1 cut(s) 84
StyI CCWWGG 2 cut(s) 93, 259
TaaI ACNGT 2 cut(s) 10, 348
TaqI TCGA 1 cut(s) 213
TasI AATT 4 cut(s) 16, 48, 87, 165
Tru1I TTAA 2 cut(s) 123, 352
Tru9I TTAA 2 cut(s) 123, 352
TseI GCWGC 2 cut(s) 179, 191
XapI RAATTY 1 cut(s) 87
XspI CTAG 1 cut(s) 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.